IslandPath Analysis: Frankia alni ACN14a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.11   STD DEV: 4.30
Frankia alni ACN14a, complete genome - 1..7497934
6711 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.09	0	424..2028	+	534	111219506	dnaA	FRAAL0002	-	chromosomal replication initiator protein
2	 75.06	0	1971..2411	-	146	111219507	-	FRAAL0003	-	hypothetical protein
3	 72.14	0	2856..4097	+	413	111219508	dnaN	FRAAL0004	-	DNA polymerase III, beta chain
4	 75.55	0	4099..5235	+	378	111219509	recF	FRAAL0005	-	recombination protein F
5	 74.16	0	5555..5941	+	128	111219510	-	FRAAL0006	-	hypothetical protein
6	 78.16	+1	6005..6178	-	57	111219511	-	FRAAL0007	-	hypothetical protein
7	 67.43	-1	6353..8323	+	656	111219512	gyrB	FRAAL0008	-	DNA gyrase subunit B
8	 69.66	0	8491..10995	+	834	111219513	gyrA	FRAAL0009	-	DNA gyrase subunit A
9	 81.09	+2	11151..11954	-	267	111219514	-	FRAAL0010	-	hypothetical protein
10	 72.82	0	12280..12897	+	205	111219515	-	FRAAL0011	-	hypothetical protein
11	 71.43	0	13085..13147	+	20	111219516	-	FRAAL0012	-	hypothetical protein
12	 70.79	0	13328..13957	-	209	111219517	-	FRAAL0013	-	hypothetical protein
13	 73.68	0	14458..15384	-	308	111219518	-	FRAAL0014	-	hypothetical protein
14	 67.17	-1	15581..15976	+	131	111219519	-	FRAAL0015	-	hypothetical protein
15	 73.02	0	16093..16470	+	125	111219520	-	FRAAL0016	-	hypothetical protein
16	 72.55	0	16491..16694	+	67	111219521	-	FRAAL0017	-	hypothetical protein
17	 75.44	0	16757..16927	+	56	111219522	-	FRAAL0018	-	hypothetical protein
18	 71.11	0	17226..17900	+	224	111219523	def	FRAAL0019	-	peptide deformylase 3 (PDF 3) (polypeptide deformylase 3)
19	 80.66	+1	18112..18504	-	130	111219524	-	FRAAL0020	-	hypothetical protein
20	 66.67	-1	18631..18843	+	70	111219525	-	FRAAL0021	-	hypothetical protein
21	 73.79	0	19083..19700	+	205	111219526	-	FRAAL0022	-	hypothetical protein
22	 75.82	0	19683..20939	-	418	111219527	-	FRAAL0023	-	hypothetical protein
23	 71.58	0	20926..21657	-	243	111219528	-	FRAAL0024	-	putative 3-demethylubiquinone-9 3-O-methyltransferase
24	 75.52	0	21669..23012	-	447	111219529	-	FRAAL0025	-	putative glycosyl transferase
25	 70.66	0	23425..23775	-	116	111219530	-	FRAAL0026	-	putative organic hydroperoxide resistance protein (partial)
26	 76.84	+1	24009..24647	+	212	111219531	-	FRAAL0027	-	putative transcriptional regulator (HTH-type)
27	 76.04	0	25728..26111	-	127	111219532	-	FRAAL0028	-	hypothetical protein
28	 71.67	0	27039..27218	-	59	111219533	-	FRAAL0029	-	hypothetical protein
29	 73.99	0	27501..28742	-	413	111219534	-	FRAAL0030	-	putative exported lipase
30	 68.41	0	29328..30245	+	305	111219535	-	FRAAL0031	-	putative integral membrane protein
31	 67.85	0	30590..30928	-	112	111219536	glnB	FRAAL0032	-	regulatory protein (P-II) for nitrogen assimilation by glutamine synthetase (ATase)
32	 71.94	0	31165..31638	+	157	111219537	-	FRAAL0033	-	Raf kinase inhibitor homologous protein.
33	 75.74	0	31902..32882	+	326	111219538	-	FRAAL0034	-	hypothetical protein
34	 72.94	0	32849..34873	-	674	111219539	-	FRAAL0035	-	putative ATP-binding protein (partial match)
35	 70.66	0	34957..36459	-	500	111219540	-	FRAAL0036	-	putative integral membrane protein
36	 68.98	0	36536..37918	-	460	111219541	-	FRAAL0037	-	hypothetical protein
37	 58.77	-2	37915..38712	-	265	111219542	-	FRAAL0038	-	hypothetical protein
38	 68.84	0	38782..39195	-	137	111219543	-	FRAAL0039	-	hypothetical protein
39	 77.96	+1	39209..41962	-	917	111219544	-	FRAAL0040	-	hypothetical protein
40	 62.32	-2	41941..42009	+	22	111219545	-	FRAAL0041	-	hypothetical protein
41	 81.24	+2	42149..42601	-	150	111219546	-	FRAAL0042	-	hypothetical protein
42	 76.45	+1	42546..42821	+	91	111219547	-	FRAAL0043	-	hypothetical protein
43	 77.97	+1	42932..43630	+	232	111219548	-	FRAAL0044	-	hypothetical protein
44	 70.88	0	43637..44632	+	331	111219549	-	FRAAL0045	-	putative secreted transglycosylase
45	 67.46	-1	44682..44807	-	41	111219550	-	FRAAL0046	-	hypothetical protein
46	 68.41	0	44837..45181	-	114	111219551	-	FRAAL0047	-	hypothetical protein
47	 76.03	0	45218..46777	-	519	111219552	-	FRAAL0048	-	lipoprotein
48	 75.81	0	46896..47081	-	61	111219553	-	FRAAL0049	-	hypothetical protein
49	 76.46	+1	47078..49375	-	765	111219554	-	FRAAL0050	-	putative protein serine/threonine kinase
50	 73.89	0	49525..52224	-	899	111219555	-	FRAAL0051	-	putative serine/threonine-protein kinase (partial match)
51	 68.74	0	52228..52710	-	160	111219556	-	FRAL0052	-	hypothetical protein
52	 69.91	0	52526..54223	+	565	111219557	pgi	FRAAL0052	-	glucosephosphate isomerase
53	 75.15	0	54328..54669	+	113	111219558	-	FRAAL0053	-	putative anti-sigma-B factor antagonist (anti-anti-sigma-B factor)
54	 71.93	0	54710..55165	-	151	111219559	-	FRAAL0054	-	hypothetical protein
55	 67.16	-1	55222..55422	+	66	111219560	-	FRAAL0055	-	hypothetical protein
56	 75.31	0	55367..55690	+	107	111219561	-	FRAAL0056	-	hypothetical protein
57	 74.22	0	55728..58931	-	1067	111219562	-	FRAAL0057	-	putative adenylate cyclase
58	 75.33	0	59114..59794	-	226	111219563	-	FRAAL0058	-	hypothetical protein
59	 76.03	0	59829..60704	-	291	111219564	-	FRAAL0059	-	putative ABC transporter ATP-binding protein
60	 76.01	0	60826..61296	-	156	111219565	-	FRAAL0060	-	putative transcription regulator protein
61	 78.43	+1	61387..62049	+	220	111219566	-	FRAAL0061	-	putative NADH oxidase/flavin reductase (partial match)
62	 72.04	0	62050..63537	+	495	111219567	-	FRAAL0062	-	EmrB/QacA family drug resistance transporter
63	 76.52	+1	63530..63925	-	131	111219568	-	FRAAL0063	-	hypothetical protein
64	 74.71	0	64122..64469	+	115	111219569	-	FRAL0065	-	hypothetical protein
65	 75.75	0	64597..68505	-	1302	111219570	-	FRAAL0064	-	hypothetical protein
66	 69.76	0	68520..70523	+	667	111219571	-	FRAAL0066	-	acyl-CoA dehydrogenase
67	 70.87	0	70663..71043	+	126	111219572	-	FRAAL0067	-	hypothetical protein
68	 67.93	0	71170..71406	-	78	111219573	-	FRAAL0068	-	hypothetical protein
69	 75.71	0	71527..73140	-	537	111219574	aceF	FRAAL0069	-	dihydrolipoamide acyltransferase component
70	 72.35	0	73172..74245	-	357	111219575	-	FRAAL0070	-	pyruvate dehydrogenase E1 component, beta subunit
71	 72.45	0	74364..75659	-	431	111219576	-	FRAAL0071	-	pyruvate dehydrogenase E1 component, alpha subunit
72	 73.66	0	75765..76694	+	309	111219577	-	FRAAL0072	-	hypothetical protein
73	 75.70	0	76873..78090	+	405	111219578	-	FRAAL0073	-	hypothetical protein
74	 71.97	0	78200..78595	-	131	111219579	-	FRAAL0074	-	putative metal uptake regulation protein
75	 69.08	0	79063..79476	+	137	111219580	-	FRAAL0075	-	hypothetical protein
76	 74.47	0	79518..80222	+	234	111219581	-	FRAAL0076	-	hypothetical protein
77	 75.75	0	80179..81807	-	542	111219582	-	FRAAL0077	-	hypothetical protein
78	 68.23	0	81866..83080	-	404	111219583	-	FRAAL0078	-	aminotransferase AlaT
79	 71.64	0	83081..83965	-	294	111219584	-	FRAAL0079	-	putative manganese ABC transporter, permease protein
80	 71.34	0	83962..84774	-	270	111219585	-	FRAAL0080	-	putative manganese transport system membrane protein
81	 73.52	0	84810..85568	-	252	111219586	-	FRAAL0081	-	manganese transport system ATP-binding protein
82	 72.19	0	85612..86118	-	168	111219587	-	FRAAL0082	-	lipoprotein
83	 69.68	0	86190..86753	-	187	111219588	-	FRAAL0083	-	hypothetical protein
84	 68.46	0	86802..87359	-	185	111219589	-	FRAAL0084	-	hypothetical protein
85	 65.79	-1	87781..88122	+	113	111219590	-	FRAAL0085	-	hypothetical protein
86	 65.95	-1	88101..88379	-	92	111219591	-	FRAAL0086	-	hypothetical protein
87	 66.18	-1	88596..89819	-	407	111219592	-	FRAAL0088	-	hypothetical protein
88	 64.19	-1	90236..90880	-	214	111219593	-	FRAAL0089	-	two-component system response regulator
89	 69.73	0	91201..91689	+	162	111219594	-	FRAAL0090	-	hypothetical protein
90	 69.25	0	91837..92493	+	218	111219595	-	FRAAL0091	-	hypothetical protein
91	 69.36	0	92498..94207	+	569	111219596	-	FRAAL0092	-	transport integral membrane protein
92	 75.45	0	94218..95675	-	485	111219597	-	FRAAL0093	-	putative RNA polymerase sigma factor
93	 70.33	0	96156..97274	-	372	111219598	-	FRAAL0094	-	putative serine protease, heat shock protein
94	 62.37	-2	98018..98413	-	131	111219599	mscL	FRAAL0095	-	mechanosensitive channel
95	 76.73	+1	99292..100632	+	446	111219600	-	FRAAL0096	-	hypothetical protein
96	 74.10	0	100646..101668	-	340	111219601	-	FRAAL0098	-	putative LpqP (hydrolase/esterase)
97	 72.41	0	101819..102166	-	115	111219602	-	FRAAL0099	-	hypothetical protein
98	 76.41	+1	102452..103693	-	413	111219603	-	FRAAL0100	-	hypothetical protein
99	 74.41	0	103799..105154	+	451	111219604	-	FRAAL0101	-	deoxyribodipyrimidine photo-lyase
100	 75.97	0	105685..106200	+	171	111219605	-	FRAAL0102	-	putative DNA polymerase related protein (partial)
72.11	MEAN

4.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.