IslandPath Analysis: Sphingomonas wittichii RW1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.70   STD DEV: 3.86
Sphingomonas wittichii RW1, complete genome - 1..5382261
4850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.41	0	245..1678	+	477	148552930	-	Swit_0001	-	chromosomal replication initiator protein DnaA
2	 76.30	+1	1789..2307	+	172	148552931	-	Swit_0002	-	NifU-like involved in Fe-S cluster formation
3	 69.35	0	2304..4091	+	595	148552932	-	Swit_0003	-	sodium/hydrogen exchanger
4	 72.88	+1	4078..4431	+	117	148552933	-	Swit_0004	-	hypothetical protein
5	 69.47	0	4444..6153	-	569	148552934	-	Swit_0005	-	band 7 protein
6	 70.06	0	6150..6767	-	205	148552935	-	Swit_0006	-	hypothetical protein
7	 71.71	0	6840..7949	-	369	148552936	-	Swit_0007	-	3-dehydroquinate synthase
8	 69.68	0	7946..8509	-	187	148552937	-	Swit_0008	-	shikimate kinase
9	 57.97	-2	8622..8759	+	45	148552938	-	Swit_0009	-	hypothetical protein
10	 74.49	+1	8740..10554	+	604	148552939	-	Swit_0010	-	hypothetical protein
11	 72.96	+1	10709..11614	+	301	148552940	-	Swit_0011	-	phage integrase family protein
12	 67.55	0	11706..13289	+	527	148552941	-	Swit_0012	-	major facilitator transporter
13	 72.59	+1	13318..14364	+	348	148552942	-	Swit_0013	-	alanine racemase
14	 67.17	0	14366..15160	+	264	148552943	-	Swit_0014	-	hypothetical protein
15	 67.46	0	15160..15918	+	252	148552944	-	Swit_0015	-	ABC transporter related
16	 67.75	0	16023..16577	+	184	148552945	-	Swit_0016	-	redoxin domain-containing protein
17	 66.84	0	16635..17213	-	192	148552946	-	Swit_0017	-	glutathione S-transferase domain-containing protein
18	 67.14	0	17449..18300	+	283	148552947	-	Swit_0018	-	metallophosphoesterase
19	 73.47	+1	18302..19330	+	342	148552948	-	Swit_0019	-	glycosyl transferase, group 1
20	 69.03	0	19473..20150	+	225	148552949	-	Swit_0020	-	hypothetical protein
21	 67.92	0	20286..20603	+	105	148552950	-	Swit_0021	-	exodeoxyribonuclease VII, small subunit
22	 72.37	0	20611..21504	+	297	148552951	-	Swit_0022	-	farnesyl-diphosphate synthase
23	 63.45	-1	21529..22026	+	165	148552952	-	Swit_0023	-	pantetheine-phosphate adenylyltransferase
24	 69.64	0	22115..23023	+	302	148552953	-	Swit_0024	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
25	 70.82	0	23033..24067	+	344	148552954	-	Swit_0025	-	queuosine biosynthesis protein
26	 68.26	0	24171..25175	-	334	148552955	-	Swit_0026	-	hypothetical protein
27	 69.83	0	25334..27262	+	642	148552956	-	Swit_0027	-	peptidase S9 prolyl oligopeptidase
28	 70.40	0	27309..28004	-	231	148552957	-	Swit_0028	-	aquaporin Z
29	 68.31	0	28114..29760	-	548	148552958	-	Swit_0029	-	peptidase M28
30	 65.48	0	29952..30374	+	140	148552959	-	Swit_0030	-	nucleoside diphosphate kinase
31	 67.45	0	30629..31009	-	126	148552960	-	Swit_0031	-	hypothetical protein
32	 72.41	0	31009..31635	-	208	148552961	-	Swit_0032	-	hypothetical protein
33	 70.98	0	31628..32206	-	192	148552962	-	Swit_0033	-	phosphoribosylglycinamide formyltransferase
34	 71.21	0	32247..33347	-	366	148552963	-	Swit_0034	-	phosphoribosylaminoimidazole synthetase
35	 72.18	0	33408..34622	+	404	148552964	-	Swit_0035	-	hypothetical protein
36	 69.55	0	34619..35242	+	207	148552965	-	Swit_0036	-	ATPase involved in DNA replication initiation
37	 67.22	0	35252..37417	+	721	148552966	-	Swit_0037	-	polyphosphate kinase
38	 74.51	+1	37404..38015	-	203	148552967	-	Swit_0038	-	phosphoesterase, PA-phosphatase related
39	 70.87	0	38110..39609	+	499	148552968	-	Swit_0039	-	Ppx/GppA phosphatase
40	 71.91	0	39831..41738	+	635	148552969	-	Swit_0040	-	acyltransferase 3
41	 67.47	0	41890..42510	+	206	148552970	-	Swit_0041	-	hypothetical protein
42	 68.77	0	42513..43700	-	395	148552971	-	Swit_0042	-	ribonuclease D
43	 66.72	0	43785..45566	+	593	148552972	aspS	Swit_0043	-	aspartyl-tRNA synthetase
44	 67.81	0	45783..46568	+	261	148552973	-	Swit_0044	-	hypothetical protein
45	 60.81	-2	46707..46979	+	90	148552974	-	Swit_0045	-	histone family protein DNA-binding protein
46	 64.89	0	47310..47702	-	130	148552975	-	Swit_0046	-	hypothetical protein
47	 62.19	-1	47725..47925	-	66	148552976	-	Swit_0047	-	YcfA family protein
48	 72.49	0	47976..48782	-	268	148552977	-	Swit_0048	-	aminoglycoside phosphotransferase
49	 67.22	0	48911..49090	+	59	148552978	-	Swit_0049	-	hypothetical protein
50	 66.82	0	49131..49778	-	215	148552979	-	Swit_0050	-	alpha/beta fold family hydrolase-like protein
51	 75.73	+1	49891..50949	+	352	148552980	-	Swit_0051	-	cysteine desulfurase
52	 74.16	+1	50946..52040	+	364	148552981	-	Swit_0052	-	aminotransferase, class V
53	 70.83	0	52037..52372	+	111	148552982	-	Swit_0053	-	ferredoxin
54	 67.31	0	52456..53235	+	259	148552983	-	Swit_0054	-	hypothetical protein
55	 70.90	0	53421..55169	+	582	148552984	-	Swit_0055	-	DNA polymerase III, subunits gamma and tau
56	 65.78	0	55166..55504	+	112	148552985	-	Swit_0056	-	hypothetical protein
57	 65.37	0	55679..56374	-	231	148552986	-	Swit_0057	-	monofunctional biosynthetic peptidoglycan transglycosylase
58	 70.21	0	56388..57884	-	498	148552987	-	Swit_0058	-	hypothetical protein
59	 71.55	0	57948..58745	+	265	148552988	-	Swit_0059	-	hypothetical protein
60	 64.35	-1	58880..59785	-	301	148552989	-	Swit_0060	-	RNA polymerase factor sigma-32
61	 69.36	0	59881..60846	-	321	148552990	-	Swit_0061	-	ribosomal large subunit pseudouridine synthase D
62	 73.71	+1	60864..61289	+	141	148552991	-	Swit_0062	-	Mov34/MPN/PAD-1 family protein
63	 70.18	0	61351..61977	+	208	148552992	-	Swit_0063	-	hypothetical protein
64	 70.31	0	61990..62538	+	182	148552993	-	Swit_0064	-	hypothetical protein
65	 72.20	0	62610..65048	+	812	148552994	-	Swit_0065	-	CheA signal transduction histidine kinase
66	 72.22	0	65051..65482	+	143	148552995	-	Swit_0066	-	CheW protein
67	 63.69	-1	65601..65969	+	122	148552996	-	Swit_0067	-	response regulator receiver protein
68	 73.26	+1	66005..67111	+	368	148552997	-	Swit_0068	-	response regulator receiver modulated CheB methylesterase
69	 71.77	0	67102..67944	+	280	148552998	-	Swit_0069	-	MCP methyltransferase, CheR-type
70	 68.18	0	68054..68779	+	241	148552999	-	Swit_0070	-	N-acetylmuramoyl-L-alanine amidase
71	 66.67	0	69284..69814	+	176	148553000	-	Swit_0071	-	hypothetical protein
72	 71.84	0	69781..70128	+	115	148553001	-	Swit_0072	-	hypothetical protein
73	 67.59	0	70165..70599	-	144	148553002	-	Swit_0073	-	response regulator receiver protein
74	 65.54	0	70997..71530	+	177	148553003	-	Swit_0074	-	peptide methionine sulfoxide reductase
75	 73.46	+1	71669..72610	-	313	148553004	-	Swit_0075	-	translation factor SUA5
76	 70.98	0	72764..73111	-	115	148553005	-	Swit_0076	-	GntR family transcriptional regulator
77	 68.36	0	73154..73744	-	196	148553006	-	Swit_0077	-	nitroreductase
78	 64.96	0	73968..75779	+	603	148553007	-	Swit_0078	-	amino acid/peptide transporter
79	 67.87	0	75766..77181	+	471	148553008	-	Swit_0079	-	amidohydrolase
80	 72.57	+1	77178..78464	+	428	148553009	-	Swit_0080	-	amidohydrolase 3
81	 68.76	0	78671..80008	+	445	148553010	-	Swit_0081	-	phosphoglucosamine mutase
82	 74.50	+1	80133..80936	+	267	148553011	-	Swit_0082	-	phosphomethylpyrimidine kinase
83	 66.83	0	81126..81734	-	202	148553012	rplI	Swit_0083	-	50S ribosomal protein L9
84	 63.56	-1	81753..81977	-	74	148553013	rpsR	Swit_0084	-	30S ribosomal protein S18
85	 70.62	0	82646..83581	+	311	148553014	-	Swit_0086	-	[Acyl-carrier-protein] S-malonyltransferase
86	 68.83	0	83687..84427	+	246	148553015	-	Swit_0087	-	3-oxoacyl-[acyl-carrier-protein] reductase
87	 59.92	-2	84535..84771	+	78	148553016	-	Swit_0088	-	acyl carrier protein
88	 66.82	0	84906..86171	+	421	148553017	-	Swit_0089	-	3-oxoacyl-[acyl-carrier-protein] synthase II
89	 70.37	0	86195..87166	+	323	148553018	-	Swit_0090	-	aminodeoxychorismate lyase
90	 66.89	0	87345..87791	-	148	148553019	-	Swit_0091	-	hypothetical protein
91	 70.26	0	87868..88284	-	138	148553020	-	Swit_0092	-	hypothetical protein
92	 66.32	0	88304..88882	-	192	148553021	-	Swit_0093	-	AsnC family transcriptional regulator
93	 71.22	0	88912..89811	+	299	148553022	-	Swit_0094	-	hypothetical protein
94	 73.14	+1	89819..90760	-	313	148553023	-	Swit_0095	-	N-acetyl-gamma-glutamyl-phosphate reductase
95	 72.20	0	90757..91695	-	312	148553024	-	Swit_0096	-	NLP/P60 protein
96	 63.33	-1	91652..91981	-	109	148553025	-	Swit_0097	-	MarR family transcriptional regulator
97	 74.11	+1	92121..93518	-	465	148553026	-	Swit_0098	-	leucyl aminopeptidase
98	 66.67	0	93521..93907	-	128	148553027	-	Swit_0099	-	thioesterase superfamily protein
99	 68.10	0	93907..94395	-	162	148553028	-	Swit_0100	-	thioesterase superfamily protein
100	 68.88	0	94528..96474	-	648	148553029	-	Swit_0101	-	K+ potassium transporter
68.70	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.