IslandPath Analysis: Geobacter metallireducens GS-15



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.54   STD DEV: 5.81
Geobacter metallireducens GS-15, complete genome - 1..3997420
3519 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.09	0	261..1613	+	450	78221229	-	Gmet_0001	-	chromosomal replication initiator protein DnaA
2	 60.25	0	1837..2958	+	373	78221230	-	Gmet_0002	-	DNA polymerase III, beta subunit
3	 64.94	0	3041..4138	+	365	78221231	-	Gmet_0003	-	DNA replication and repair protein RecF
4	 61.47	0	4149..6536	+	795	78221232	-	Gmet_0004	-	DNA gyrase subunit B
5	 63.25	0	6570..9143	+	857	78221233	-	Gmet_0005	-	DNA gyrase subunit A
6	 68.09	+1	9171..10790	+	539	78221234	-	Gmet_0006	-	hypothetical protein
7	 51.30	-1	11025..11564	-	179	78221235	-	Gmet_0007	-	hypothetical protein
8	 67.96	+1	12343..13350	+	335	78221236	-	Gmet_0008	-	NAD-dependent glycerol-3-phosphate dehydrogenase-like
9	 62.52	0	13386..15677	+	763	78221237	-	Gmet_0009	-	PAS/PAC sensor signal transduction histidine kinase
10	 65.88	+1	15674..17200	+	508	78221238	-	Gmet_0010	-	PAS/PAC sensor hybrid histidine kinase
11	 62.47	0	17225..18676	+	483	78221239	-	Gmet_0011	-	PAS/PAC sensor signal transduction histidine kinase
12	 63.35	0	18680..20365	+	561	78221240	-	Gmet_0012	-	multi-sensor signal transduction histidine kinase
13	 67.53	+1	20371..21297	+	308	78221241	-	Gmet_0013	-	daunorubicin resistance ABC transporter ATP-binding subunit
14	 66.67	+1	21297..22052	+	251	78221242	-	Gmet_0014	-	ABC transporter permease
15	 60.88	0	22139..23209	+	356	78221243	-	Gmet_0015	-	radical SAM family protein
16	 64.71	0	23372..24394	+	340	78221244	-	Gmet_0016	-	uroporphyrinogen decarboxylase HemE
17	 65.69	+1	24472..24675	+	67	78221245	-	Gmet_0017	-	SlyX
18	 65.42	+1	24717..26162	-	481	78221246	-	Gmet_0018	-	metal dependent phosphohydrolase
19	 64.26	0	26344..27297	+	317	78221247	-	Gmet_0019	-	ferrochelatase
20	 61.83	0	27303..27488	+	61	78221248	-	Gmet_0020	-	hypothetical protein
21	 66.54	+1	27495..28313	+	272	78221249	-	Gmet_0021	-	ATPase associated with various cellular activities
22	 67.28	+1	28317..30281	+	654	78221250	-	Gmet_0022	-	hypothetical protein
23	 61.53	0	30345..31571	+	408	78221251	-	Gmet_0023	-	putative PAS/PAC sensor protein
24	 64.44	0	31850..32884	-	344	78221252	-	Gmet_0024	-	3-deoxy-7-phosphoheptulonate synthase
25	 63.86	0	33046..33330	+	94	78221253	-	Gmet_0025	-	hypothetical protein
26	 61.17	0	33361..33633	+	90	78221254	-	Gmet_0026	-	hypothetical protein
27	 63.95	0	33627..34214	+	195	78221255	-	Gmet_0027	-	hypothetical protein
28	 59.03	0	34354..34641	+	95	78221256	groES	Gmet_0028	-	co-chaperonin GroES
29	 61.97	0	34748..36388	+	546	78221257	groEL	Gmet_0029	-	chaperonin GroEL
30	 61.62	0	36669..38729	+	686	78221258	-	Gmet_0030	-	putative serine protein kinase, PrkA
31	 61.10	0	38780..40108	+	442	78221259	-	Gmet_0031	-	hypothetical protein
32	 60.86	0	40151..41821	+	556	78221260	-	Gmet_0032	-	SpoVR-like family protein
33	 59.74	0	41865..44129	+	754	78221261	-	Gmet_0033	-	putative serine protein kinase, PrkA
34	 63.03	0	44149..45276	-	375	78221262	-	Gmet_0034	-	metallophosphoesterase
35	 57.30	0	45698..46594	+	298	78221263	-	Gmet_0035	-	metal dependent phosphohydrolase
36	 61.41	0	46634..47242	-	202	78221264	-	Gmet_0036	-	hypothetical protein
37	 54.50	0	47308..47718	-	136	78221265	-	Gmet_0037	-	hypothetical protein
38	 62.38	0	47802..49619	-	605	78221266	-	Gmet_0038	-	K+ potassium transporter
39	 60.24	0	49639..51459	-	606	78221267	-	Gmet_0039	-	K+ potassium transporter
40	 67.59	+1	51627..53999	+	790	78221268	-	Gmet_0040	-	peptidase U32
41	 68.43	+1	54005..54910	+	301	78221269	-	Gmet_0041	-	Hsp33 protein
42	 67.84	+1	54982..55662	+	226	78221270	-	Gmet_0042	-	putative cyclase
43	 65.23	0	55674..57416	+	580	78221271	-	Gmet_0043	-	diguanylate cyclase
44	 62.43	0	57520..58038	+	172	78221272	-	Gmet_0044	-	hypothetical protein
45	 52.87	-1	58122..59078	-	318	78221273	-	Gmet_0045	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
46	 52.87	-1	59548..60504	+	318	78221274	-	Gmet_0046	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
47	 68.58	+1	60538..61425	-	295	78221275	-	Gmet_0047	-	pseudouridine synthase, RluD
48	 65.13	0	61422..61943	-	173	78221276	-	Gmet_0048	-	NUDIX hydrolase
49	 64.91	0	62682..63137	-	151	78221277	-	Gmet_0050	-	hypothetical protein
50	 67.61	+1	63328..64389	+	353	78221278	-	Gmet_0051	-	hypothetical protein
51	 65.74	+1	64386..65684	+	432	78221279	-	Gmet_0052	-	peptidase M16-like
52	 63.51	0	65819..67273	-	484	78221280	-	Gmet_0053	-	transglutaminase-like
53	 58.94	0	67283..67489	-	68	78221281	-	Gmet_0054	-	hypothetical protein
54	 61.65	0	67895..70165	+	756	78221282	-	Gmet_0055	-	sigma-54 dependent trancsriptional regulator
55	 53.65	-1	70400..70591	+	63	78221283	-	Gmet_0056	-	CopG-like DNA-binding protein
56	 60.84	0	70681..72138	-	485	78221284	-	Gmet_0057	-	cysteinyl-tRNA synthetase
57	 64.20	0	72158..73819	-	553	78221285	-	Gmet_0058	-	glutaminyl-tRNA synthetase
58	 64.14	0	73856..74329	-	157	78221286	-	Gmet_0059	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
59	 64.66	0	74326..75024	-	232	78221287	-	Gmet_0060	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
60	 64.87	0	75140..76528	-	462	78221288	-	Gmet_0061	-	selenocysteine synthase
61	 59.29	0	76634..77338	-	234	78221289	-	Gmet_0062	-	GntR family transcriptional regulator
62	 58.33	0	77504..78559	+	351	78221290	-	Gmet_0063	-	TrkA family potassium uptake protein
63	 62.39	0	78552..79322	+	256	78221291	-	Gmet_0064	-	xylose isomerase-like TIM barrel
64	 64.50	0	79368..80801	-	477	78221292	-	Gmet_0065	-	cardiolipin synthetase 2
65	 67.49	+1	80968..82308	+	446	78221293	-	Gmet_0066	-	Fmu, rRNA SAM-dependent methyltransferase:Nop2p
66	 59.91	0	82324..82989	+	221	78221294	-	Gmet_0067	-	ribulose-5-phosphate 3-epimerase
67	 61.88	0	83027..83611	+	194	78221295	-	Gmet_0068	-	NUDIX hydrolase
68	 61.69	0	83666..84610	+	314	78221296	-	Gmet_0069	-	response regulator receiver modulated diguanylate cyclase
69	 65.33	0	84643..85314	-	223	78221297	-	Gmet_0070	-	DNA-3-methyladenine glycosylase III
70	 65.82	+1	85314..88505	-	1063	78221298	-	Gmet_0071	-	glutamate-ammonia ligase adenylyltransferase
71	 66.95	+1	88502..89542	-	346	78221299	-	Gmet_0072	-	translation initiation factor 2B subunit I
72	 65.28	0	89602..91041	-	479	78221300	gatB	Gmet_0073	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
73	 51.88	-1	91103..91474	-	123	78221301	-	Gmet_0074	-	DNA-damage-inducible protein D
74	 67.42	+1	91513..92970	-	485	78221302	-	Gmet_0075	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
75	 64.58	0	93142..93429	-	95	78221303	-	Gmet_0076	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
76	 63.09	0	93589..95574	-	661	78221304	-	Gmet_0077	-	histidine kinase
77	 67.26	+1	95728..97236	-	502	78221305	-	Gmet_0078	-	phospholipase D/transphosphatidylase
78	 45.57	-2	97371..98261	-	296	78221306	-	Gmet_0079	-	hypothetical protein
79	 41.47	-2	98285..98665	-	126	78221307	-	Gmet_0080	-	hypothetical protein
80	 53.59	-1	98843..100096	+	417	78221308	-	Gmet_0081	-	IS204/IS1001/IS1096/IS1165 transposase
81	 40.30	-2	100320..100994	-	224	78221309	-	Gmet_0082	-	hypothetical protein
82	 63.38	0	101105..103597	-	830	78221310	-	Gmet_0083	-	Band 7 protein
83	 65.20	0	103670..105166	-	498	78221311	-	Gmet_0084	-	hypothetical protein
84	 60.92	0	105262..105870	-	202	78221312	-	Gmet_0085	-	protein tyrosine/serine phosphatase
85	 68.64	+1	105926..109312	-	1128	78221313	-	Gmet_0086	-	2-acyl-glycerophospho-ethanolamine acyltransferase
86	 67.36	+1	109309..110313	-	334	78221314	-	Gmet_0087	-	amidohydrolase 2
87	 68.22	+1	110601..112076	+	491	78221315	-	Gmet_0088	-	sigma-54 factor, interaction region
88	 65.46	+1	112218..114446	-	742	78221316	-	Gmet_0089	-	ATP-dependent DNA helicase PcrA
89	 68.82	+1	114582..115091	+	169	78221317	-	Gmet_0090	-	methylated-DNA-(protein)-cysteine S-methyltransferase
90	 66.77	+1	115137..116111	+	324	78221318	-	Gmet_0091	-	lipid A biosynthesis acyltransferase
91	 64.65	0	116108..116800	-	230	78221319	-	Gmet_0092	-	Crp/FNR family transcriptional regulator
92	 51.30	-1	116890..117429	-	179	78221320	-	Gmet_0093	-	hypothetical protein
93	 52.87	-1	118485..119441	+	318	78221321	-	Gmet_0094	-	IS111A/IS1328/IS1533/IS116/IS110/IS902 transposase
94	 69.05	+1	119490..120203	-	237	78221322	-	Gmet_0095	-	uracil-DNA glycosylase superfamily protein
95	 69.53	+1	120200..121246	-	348	78221323	-	Gmet_0096	-	peptidase M48, Ste24p
96	 63.27	0	121243..122508	-	421	78221324	-	Gmet_0097	-	hypothetical protein
97	 59.60	0	122523..122720	-	65	78221325	-	Gmet_0098	-	RNA-binding S4
98	 63.48	0	122821..123384	+	187	78221326	-	Gmet_0099	-	translation initiation factor 5A (eIF-5A)
99	 57.94	0	123704..125560	-	618	78221327	-	Gmet_0100	-	cytochrome c family protein
100	 64.21	0	125888..127762	-	624	78221328	-	Gmet_0101	-	radical SAM family protein
59.54	MEAN

5.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.