IslandPath Analysis: Helicobacter pylori 26695



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.13   STD DEV: 3.75
Helicobacter pylori 26695, complete genome - 1..1667867
1576 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.01	0	217..633	-	138	15644635	nusB	HP0001	-	transcription antitermination protein NusB
2	 45.65	+1	635..1105	-	156	15644636	ribH	HP0002	-	riboflavin synthase subunit beta
3	 42.84	0	1115..1945	-	276	15644637	-	HP0003	-	2-dehydro-3-deoxyphosphooctonate aldolase
4	 40.09	0	1932..2597	-	221	15644638	-	HP0004	-	carbonic anhydrase (icfA)
5	 39.91	0	2719..3402	+	227	15644639	-	HP0005	-	orotidine 5'-phosphate decarboxylase
6	 41.03	0	3403..4233	+	276	15644640	panC	HP0006	-	pantoate--beta-alanine ligase
7	 48.61	+2	4697..4768	+	23	15644641	-	HP0007	-	hypothetical protein
8	 23.81	-2	4937..5020	+	27	15644642	-	HP0008	-	hypothetical protein
9	 42.52	0	5241..7145	-	634	15646197	omp1	HP0009	-	outer membrane protein
10	 45.28	+1	7603..9243	-	546	15644643	groEL	HP0010	-	chaperonin GroEL
11	 41.74	0	9268..9624	-	118	15644644	groES	HP0011	-	co-chaperonin GroES
12	 40.18	0	9911..11590	+	559	15644645	dnaG	HP0012	-	DNA primase
13	 40.55	0	11587..12639	+	350	15644646	-	HP0013	-	hypothetical protein
14	 38.89	0	12728..13555	+	275	15644647	-	HP0014	-	hypothetical protein
15	 39.72	0	13702..13983	+	93	15644648	-	HP0015	-	hypothetical protein
16	 35.23	-1	13983..14246	+	87	15644649	-	HP0016	-	hypothetical protein
17	 37.69	0	14248..16611	+	787	15644650	-	HP0017	-	virB4 homolog (virB4)
18	 40.00	0	16863..18272	+	469	15644651	-	HP0018	-	hypothetical protein
19	 40.37	0	18380..19345	+	321	15644652	-	HP0019	-	chemotaxis protein (cheV)
20	 42.78	0	19342..20559	+	405	15644653	-	HP0020	-	carboxynorspermidine decarboxylase (nspC)
21	 44.68	+1	20569..21141	-	190	15644654	-	HP0021	-	lipid A 1-phosphatase
22	 39.97	0	21152..22717	-	521	15644655	-	HP0022	-	lipid A phosphoethanolamine transferase
23	 37.50	0	22773..22892	+	39	15644656	-	HP0023	-	hypothetical protein
24	 32.26	-1	22903..22995	+	30	15644657	-	HP0024	-	hypothetical protein
25	 44.29	+1	23324..25459	-	711	15644658	-	HP0025	-	outer membrane protein (omp2)
26	 44.81	+1	26078..27358	-	426	15644659	gltA	HP0026	-	type II citrate synthase
27	 42.80	0	27557..28834	+	425	15644660	-	HP0027	-	isocitrate dehydrogenase (icd)
28	 37.45	0	28901..29434	+	177	15644661	-	HP0028	-	hypothetical protein
29	 40.03	0	29411..30067	-	218	15644662	-	HP0029	-	dethiobiotin synthetase (bioD)
30	 36.70	0	30071..31852	-	593	15644663	-	HP0030	-	hypothetical protein
31	 39.37	0	31961..32374	+	137	15644664	-	HP0031	-	hypothetical protein
32	 43.12	+1	32405..32680	+	91	15644665	-	HP0032	-	hypothetical protein
33	 39.44	0	32680..34905	+	741	15644666	-	HP0033	-	ATP-dependent C1p protease (clpA)
34	 42.94	+1	34895..35248	+	117	15644667	-	HP0034	-	aspartate alpha-decarboxylase
35	 40.82	0	35251..35544	+	97	15644668	-	HP0035	-	hypothetical protein
36	 39.40	0	35544..36548	+	334	15644669	-	HP0036	-	hypothetical protein
37	 38.16	0	36556..37611	+	351	15644670	-	HP0037	-	NADH-ubiquinone oxidoreductase subunit
38	 39.97	0	37738..38475	+	245	15644671	-	HP0038	-	hypothetical protein
39	 36.76	0	38472..39453	+	326	15646206	-	HP0039m	-	component of conjugal plasmid transfer system
40	 38.98	0	39446..39817	+	123	15644672	-	HP0041	-	hypothetical protein
41	 43.02	+1	39880..40581	+	233	15644673	-	HP0042	-	trbI protein
42	 39.14	0	40651..42063	+	470	15644674	-	HP0043	-	mannose-6-phosphate isomerase (pmi) or (algA)
43	 40.75	0	42105..43250	+	381	15644675	-	HP0044	-	GDP-D-mannose dehydratase
44	 41.48	0	43243..44175	+	310	15644676	-	HP0045	-	nodulation protein (nolK)
45	 39.86	0	44299..44436	+	45	15644677	-	HP0046	-	hypothetical protein
46	 41.34	0	45041..46039	-	332	15644678	-	HP0047	-	hydrogenase expression/formation protein (hypE)
47	 41.77	0	46042..48351	-	769	15644679	-	HP0048	-	transcriptional regulator (hypF)
48	 40.18	0	48291..49283	-	330	15644680	-	HP0049	-	hypothetical protein
49	 39.34	0	49335..50033	-	232	15644681	-	HP0050	-	adenine specific DNA methyltransferase (dpnA)
50	 38.86	0	50030..51097	-	355	15644682	-	HP0051	-	cytosine specific DNA methyltransferase (DDEM)
51	 34.74	-1	51272..52264	-	330	15644683	-	HP0052	-	hypothetical protein
52	 29.84	-2	52459..53718	-	419	15644684	-	HP0053	-	hypothetical protein
53	 32.93	-1	53715..56186	-	823	15644685	-	HP0054	-	adenine/cytosine DNA methyltransferase
54	 42.59	0	56224..57714	-	496	15644686	-	HP0055	-	sodium/proline symporter
55	 40.84	0	57741..61298	-	1185	15644687	-	HP0056	-	delta-1-pyrroline-5-carboxylate dehydrogenase
56	 39.52	0	61619..61828	+	69	15644688	-	HP0057	-	hypothetical protein
57	 37.43	0	63145..63999	+	284	15644689	-	HP0059	-	hypothetical protein
58	 39.03	0	64016..66457	+	813	15644690	-	HP0060	-	hypothetical protein
59	 40.70	0	66454..67023	+	189	15644691	-	HP0061	-	hypothetical protein
60	 39.46	0	67039..67299	+	86	15644692	-	HP0062	-	hypothetical protein
61	 38.83	0	67310..68800	+	496	15644693	-	HP0063	-	hypothetical protein
62	 39.52	0	68770..69189	+	139	15644694	-	HP0064	-	hypothetical protein
63	 35.59	0	69191..69544	+	117	15644695	-	HP0065	-	hypothetical protein
64	 40.06	0	69468..71963	+	831	15644696	-	HP0066	-	ATP-binding protein
65	 43.86	+1	72021..72818	-	265	15644697	-	HP0067	-	urease accessory protein (ureH)
66	 44.83	+1	72818..73417	-	199	15644698	-	HP0068	-	urease accessory protein (ureG)
67	 40.92	0	73446..74210	-	254	15644699	-	HP0069	-	urease accessory protein (ureF)
68	 40.74	0	74233..74745	-	170	15644700	ureE	HP0070	-	urease accessory protein UreE
69	 43.54	+1	74747..75334	-	195	15644701	-	HP0071	-	urease accessory protein (ureI)
70	 44.21	+1	75527..77236	-	569	15644702	ureC	HP0072	-	urease subunit alpha
71	 41.84	0	77240..77956	-	238	15644703	-	HP0073	-	bifunctional urease subunit gamma/beta
72	 36.92	0	78302..78775	-	157	15644704	lspA	HP0074	-	lipoprotein signal peptidase
73	 41.26	0	78769..80106	-	445	15644705	-	HP0075	-	phosphoglucosamine mutase
74	 38.89	0	80196..80465	+	89	15644706	rpsT	HP0076	-	30S ribosomal protein S20
75	 42.87	0	80589..81647	+	352	15644707	prfA	HP0077	-	peptide chain release factor 1
76	 43.41	+1	82058..82315	+	85	15644708	-	HP0078	-	hypothetical protein
77	 43.06	+1	82326..84113	+	595	15644709	-	HP0079	-	outer membrane protein (omp3)
78	 42.14	0	84359..86140	+	593	15644710	-	HP0080	-	hypothetical protein
79	 39.84	0	86410..86532	+	40	15644711	-	HP0081	-	hypothetical protein
80	 39.17	0	86656..88677	-	673	15644712	-	HP0082	-	methyl-accepting chemotaxis transducer (tlpC)
81	 42.82	0	88833..89222	-	129	15644713	rpsI	HP0083	-	30S ribosomal protein S9
82	 42.02	0	89219..89644	-	141	15644714	rplM	HP0084	-	50S ribosomal protein L13
83	 37.04	0	89957..90145	-	62	15644715	-	HP0085	-	hypothetical protein
84	 40.80	0	90152..91504	-	450	15644716	-	HP0086	-	hypothetical protein
85	 39.59	0	91558..92931	-	457	15644717	-	HP0087	-	hypothetical protein
86	 39.09	0	92952..94967	-	671	15644718	-	HP0088	-	RNA polymerase sigma factor RpoD
87	 42.82	0	95191..95886	-	231	15644719	-	HP0089	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
88	 42.80	0	95897..96826	-	309	15644720	-	HP0090	-	acyl-carrier-protein S-malonyltransferase
89	 30.70	-2	97256..98089	+	277	15644721	-	HP0091	-	type II restriction enzyme R protein (hsdR)
90	 39.81	0	98083..98916	+	277	15644722	-	HP0092	-	type II restriction enzyme M protein (hsdM)
91	 41.27	0	98936..99376	-	146	15644723	-	HP0093	-	hypothetical protein
92	 40.17	0	99373..99840	-	155	15644724	-	HP0094	-	hypothetical protein
93	 36.91	0	99939..100469	-	176	15644725	-	HP0095	-	hypothetical protein
94	 40.11	0	100542..101486	+	314	15644726	-	HP0096	-	2-hydroxyacid dehydrogenase
95	 42.02	0	101643..102356	-	237	15644727	-	HP0097	-	hypothetical protein
96	 40.52	0	102461..103921	-	486	15644728	-	HP0098	-	threonine synthase
97	 39.45	0	104125..106152	+	675	15644729	-	HP0099	-	methyl-accepting chemotaxis protein (tlpA)
98	 38.48	0	106152..107258	+	368	15644730	-	HP0100	-	hypothetical protein
99	 34.25	-1	107471..108232	+	253	15644731	-	HP0101	-	hypothetical protein
100	 38.33	0	108215..108994	-	259	15644732	-	HP0102	-	hypothetical protein
39.13	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.