version 1.0
Lactobacillus casei, complete genome - 1..3079196 3044 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 44.30 0 81..1430 + 449 191636825 dnaA LCABL_00010 - Chromosomal replication initiator protein dnaA 2 44.74 0 1603..2742 + 379 191636826 dnaN LCABL_00020 - DNA-directed DNA polymerase III, beta subunit 3 53.99 +2 3595..3807 + 70 191636827 yyaA LCABL_00030 - YyaA protein (BH0003 protein) 4 46.24 0 3804..4919 + 371 191636828 recF LCABL_00040 - DNA replication and repair protein recF 5 49.64 0 5048..7009 + 653 191636829 gyrB LCABL_00050 - DNA gyrase, B subunit 6 48.59 0 7071..9692 + 873 191636830 gyrA LCABL_00060 - DNA gyrase, A subunit 7 45.53 0 9797..10501 - 234 191636831 deoC LCABL_00070 - Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) 8 50.46 +1 10684..11115 + 143 191636832 ssb LCABL_00080 - Single-stranded DNA-binding protein 9 40.40 -1 11243..11539 + 98 191636833 rpsF LCABL_00090 - 30S ribosomal protein S6 10 50.75 +1 11570..12166 + 198 191636834 ssb LCABL_00100 - Single-stranded DNA-binding protein 11 49.37 0 12253..12489 + 78 191636835 rpsR LCABL_00110 - 30S ribosomal protein S18 12 35.84 -2 12918..14510 + 530 191636836 PST transporter LCABL_00120 - Polysaccharide transporter 13 36.92 -2 14766..14960 + 64 191636837 - LCABL_00130 - hypothetical protein 14 49.97 0 15372..16850 + 492 191636838 cydA LCABL_00140 - Cytochrome bd-I ubiquinol oxidase subunit I 15 49.40 0 16867..17862 + 331 191636839 cydB LCABL_00150 - Cytochrome d ubiquinol oxidase, subunit II 16 49.33 0 17859..18083 + 74 191636840 - LCABL_00160 - hypothetical protein 17 38.64 -2 18156..18833 - 225 191636841 yiiE LCABL_00170 - Putative uncharacterized protein yiiE 18 35.35 -2 19146..19541 - 131 191636842 - LCABL_00180 - hypothetical protein 19 52.15 +1 19754..20056 - 100 191636843 - LCABL_00190 - hypothetical protein 20 40.17 -1 20329..21147 - 272 191636844 FNV1622 LCABL_00200 - CAAX amino terminal protease family 21 45.36 0 21266..21448 - 60 191636845 - LCABL_00210 - hypothetical protein 22 48.33 0 21499..21678 - 59 191636846 - LCABL_00220 - hypothetical protein 23 47.98 0 22176..23411 - 411 191636847 - LCABL_00230 - Surface antigen 24 51.09 +1 23615..26188 - 857 191636848 ylbB LCABL_00240 - ABC transporter permease protein 25 47.44 0 26201..26902 - 233 191636849 - LCABL_00250 - ABC-type antimicrobial peptide transport system, ATPase component 26 45.29 0 27182..27733 + 183 191636850 - LCABL_00260 - Regulatory protein, TetR 27 46.84 0 27777..28583 + 268 191636851 cof LCABL_00270 - Hydrolase Cof 28 47.35 0 28588..28908 + 106 191636852 - LCABL_00280 - hypothetical protein 29 37.10 -2 29747..30250 - 167 191636853 - LCABL_00290 - hypothetical protein 30 42.35 -1 30270..32420 - 716 191636854 ybfG LCABL_00300 - YbfG 31 50.23 +1 32489..33376 - 295 191636855 - LCABL_00310 - hypothetical protein 32 43.83 0 33564..34163 + 199 191636856 - LCABL_00320 - hypothetical protein 33 48.66 0 34287..35180 - 297 191636857 corA LCABL_00330 - CorA-magnesium and cobalt transporter 34 47.10 0 35229..35867 - 212 191636858 - LCABL_00340 - Transcriptional regulator 35 42.86 -1 36024..36044 + 6 191636859 - LCABL_00350 - hypothetical protein 36 48.51 0 36096..37472 + 458 191636860 mntH LCABL_00360 - Probable manganese transport protein mntH 37 46.09 0 37695..38039 - 114 191636861 - LCABL_00370 - hypothetical protein 38 38.06 -2 38115..38474 - 119 191636862 - LCABL_00380 - hypothetical protein 39 49.20 0 38715..40157 + 480 191636863 pepD LCABL_00390 - Dipeptidase, peptidase U 34 family 40 48.58 0 40352..40987 + 211 191636864 - LCABL_00400 - Predicted membrane protein 41 37.18 -2 41037..41348 - 103 191636865 orf2 LCABL_00410 - Orf2 42 35.98 -2 41517..41705 + 62 191636866 - LCABL_00420 - hypothetical protein 43 44.77 0 41837..42448 - 203 191636867 - LCABL_00430 - hypothetical protein 44 33.54 -2 42806..43279 + 157 191636868 - LCABL_00440 - hypothetical protein 45 37.46 -2 43431..43769 + 112 191636869 - LCABL_00450 - hypothetical protein 46 41.41 -1 43766..43963 + 65 191636870 - LCABL_00460 - hypothetical protein 47 49.65 0 44103..44813 + 236 191636871 yqfD LCABL_00470 - Amino acid permease 48 54.24 +2 44800..45129 + 109 191636872 yqfC LCABL_00480 - Putative uncharacterized protein yqfC 49 41.24 -1 45367..45657 - 96 191636873 - LCABL_00490 - hypothetical protein 50 39.35 -1 46010..46225 - 71 191636874 - LCABL_00500 - hypothetical protein 51 42.12 -1 46572..47447 - 291 191636875 FNV1622 LCABL_00510 - CAAX amino terminal protease family 52 51.15 +1 47793..48443 - 216 191636876 eda-1 LCABL_00520 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 53 48.59 0 48612..50027 - 471 191636877 - LCABL_00530 - hypothetical protein 54 40.55 -1 50409..51101 + 230 191636878 kdgR LCABL_00540 - GntR family transcription regulator 55 44.24 0 51800..52120 + 106 191636879 orf25 LCABL_00550 - Putative uncharacterized protein orf25 56 40.07 -1 52309..53184 - 291 191636880 rgg LCABL_00560 - HTH-type transcriptional regulator rgg 57 39.80 -1 53277..54869 + 530 191636881 ABC-NP LCABL_00570 - ABC transporter ATP-binding/membrane spanning permease-possible multidrug resistance 58 50.51 +1 55207..56580 - 457 191636882 ypiB LCABL_00580 - Transporter 59 41.05 -1 56758..57081 - 107 191636883 - LCABL_00590 - hypothetical protein 60 49.91 0 57262..60573 - 1103 191636884 - LCABL_00600 - MMPL precursor 61 46.60 0 60570..61172 - 200 191636885 bm3R1 LCABL_00610 - HTH-type transcriptional repressor Bm3R1 62 55.56 +2 61423..61683 - 86 191636886 - LCABL_00620 - hypothetical protein 63 52.19 +1 61896..62558 - 220 191636887 opuD LCABL_00630 - Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein 64 48.14 0 62558..63469 - 303 191636888 opuCc LCABL_00640 - Putative ABC transporter; osmoprotectant-binding protein, glycine betaine/carnitine/choline ABC transporter 65 53.46 +1 63499..64134 - 211 191636889 opuCb LCABL_00650 - Putative osmoprotectant ABC transporter; permease protein 66 47.53 0 64131..65384 - 417 191636890 opuA LCABL_00660 - Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein 67 52.72 +1 67303..69159 + 618 191636891 cadA LCABL_00670 - Cadmium transporting P-type ATPase 68 44.30 0 69179..69406 + 75 191636892 - LCABL_00680 - Heavy metal transport/detoxification protein 69 33.33 -2 69502..69510 + 2 191636893 - LCABL_00690 - hypothetical protein 70 50.26 +1 69554..70138 + 194 191636894 dpsB LCABL_00700 - DNA binding protein 71 51.21 +1 70287..70946 + 219 191636895 flp LCABL_00710 - Probable transcriptional regulator flp 72 46.79 0 71561..72355 - 264 191636896 trpA LCABL_00720 - Tryptophan synthase alpha chain 73 47.58 0 72348..73568 - 406 191636897 trpB LCABL_00730 - Tryptophan synthase beta chain 74 47.17 0 73552..74151 - 199 191636898 trpF LCABL_00740 - N-(5-phosphoribosyl)anthranilate isomerase (PRAI) 75 46.62 0 74179..74961 - 260 191636899 trpC LCABL_00750 - Indole-3-glycerol phosphate synthase (IGPS) 76 50.19 +1 74958..75983 - 341 191636900 trpD LCABL_00760 - Anthranilate phosphoribosyltransferase 77 33.33 -2 76044..76088 - 14 191636901 - LCABL_00770 - hypothetical protein 78 45.95 0 76662..77945 - 427 191636902 sgaT LCABL_00780 - SgaT protein 79 44.11 0 77950..78246 - 98 191636903 SgaB LCABL_00790 - Phosphotransferase system, lactose/cellobiose-specific IIB subunit 80 45.83 0 78239..78694 - 151 191636904 SgaA LCABL_00800 - Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 81 37.50 -2 78737..78784 - 15 191636905 - LCABL_00810 - hypothetical protein 82 38.10 -2 79266..79979 - 237 191636906 - LCABL_00820 - Lin2946 protein 83 45.35 0 80316..81455 + 379 191636907 - LCABL_00830 - hypothetical protein 84 50.30 +1 81587..83413 - 608 191636908 - LCABL_00840 - Drug resistance transporter EmrB/QacA subfamily precursor 85 48.36 0 83572..84150 + 192 191636909 - LCABL_00850 - Transcriptional regulator 86 40.94 -1 84630..85352 - 240 191636910 - LCABL_00860 - hypothetical protein 87 44.36 0 85552..86784 - 410 191636911 - LCABL_00870 - hypothetical protein 88 44.59 0 86789..87703 - 304 191636912 - LCABL_00880 - hypothetical protein 89 42.65 -1 87700..88386 - 228 191636913 stpC LCABL_00890 - Potential ABC transporter 90 44.54 0 89211..89576 - 121 191636914 chpA LCABL_00900 - Cell growth regulatory protein 91 41.11 -1 89573..89842 - 89 191636915 - LCABL_00910 - hypothetical protein 92 44.07 0 91367..91636 + 89 191636916 ybfG LCABL_00920 - YbfG 93 42.31 -1 91746..93461 + 571 191636917 ybfG LCABL_00930 - YbfG 94 38.65 -2 93648..93929 - 93 191636918 - LCABL_00940 - hypothetical protein 95 46.67 0 93971..93985 + 4 191636919 - LCABL_00950 - hypothetical protein 96 53.26 +1 94519..95286 - 255 191636920 dapB LCABL_00960 - Dihydrodipicolinate reductase (DHPR) 97 52.98 +1 95283..96188 - 301 191636921 dapA LCABL_00970 - Dihydrodipicolinate synthase 98 51.30 +1 96332..97483 - 383 191636922 dapE LCABL_00980 - Succinyl-diaminopimelate desuccinylase 99 51.77 +1 97491..98195 - 234 191636923 dapD LCABL_00990 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 100 52.34 +1 98206..99552 - 448 191636924 lysA LCABL_01000 - Diaminopimelate decarboxylase 46.51 MEAN 3.59 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0