IslandPath Analysis: Xylella fastidiosa Temecula1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.22   STD DEV: 5.17
Xylella fastidiosa Temecula1, complete genome - 1..2519802
2034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.29	-2	146..1465	+	439	28197946	dnaA	PD0001	-	chromosomal replication initiation protein
2	 37.42	-2	1747..2847	+	366	28197947	dnaN	PD0002	-	DNA polymerase III subunit beta
3	 41.00	-2	3153..4247	+	364	28197948	recF	PD0003	-	recombination protein F
4	 35.37	-2	4501..4746	+	81	28197949	-	PD0004	-	hypothetical protein
5	 46.67	-1	4743..7187	+	814	28197950	gyrB	PD0005	-	DNA gyrase subunit B
6	 44.59	-1	7388..8062	+	224	28197951	-	PD0006	-	hypothetical protein
7	 50.61	0	8127..8942	+	271	28197952	-	PD0007	-	hypothetical protein
8	 44.22	-1	9046..10239	+	397	28197953	-	PD0008	-	hypothetical protein
9	 52.10	0	10683..11348	+	221	28197954	tonB	PD0009	-	TonB protein
10	 50.33	0	11444..12208	+	254	28197955	exbB	PD0010	-	biopolymer transport ExbB protein
11	 42.62	-1	12265..12684	+	139	28197956	exbD1	PD0011	-	biopolymer transport ExbD1 protein
12	 45.01	-1	12691..13101	+	136	28197957	exbD2	PD0012	-	biopolymer transport ExbD2 protein
13	 51.68	0	13819..16206	+	795	28197958	-	PD0013	-	dipeptidyl-peptidase
14	 52.49	0	16261..16803	+	180	28197959	-	PD0014	-	hypothetical protein
15	 53.81	0	17033..17950	+	305	28197960	hemF	PD0015	-	coproporphyrinogen III oxidase
16	 38.72	-2	20838..21134	+	98	28197961	-	PD0017	-	hypothetical protein
17	 50.05	0	21593..22687	-	364	77747623	aroG	PD0018	-	phospho-2-dehydro-3-deoxyheptonate aldolase
18	 53.37	0	23858..24421	+	187	28197963	fimT	PD0019	-	pre-pilin like leader sequence
19	 50.62	0	24431..24910	+	159	28197964	pilV	PD0020	-	pre-pilin leader sequence
20	 50.47	0	24907..25857	+	316	28197965	-	PD0021	-	hypothetical protein
21	 50.51	0	25854..26441	+	195	28197966	pilX	PD0022	-	PilX protein
22	 52.78	0	26465..30109	+	1214	28197967	pilY1	PD0023	-	PilY1 protein
23	 50.51	0	30136..30531	+	131	28197968	pilE	PD0024	-	PilE protein
24	 53.61	0	30962..31696	-	244	28197969	pyrF	PD0025	-	orotidine 5'-phosphate decarboxylase
25	 52.04	0	32820..34022	+	400	28197970	tyrB	PD0026	-	aromatic amino acid aminotransferase
26	 45.43	-1	34906..35310	-	134	28197971	mscL	PD0027	-	large-conductance mechanosensitive channel
27	 46.33	-1	35638..35991	-	117	28197972	-	PD0028	-	hypothetical protein
28	 48.31	0	36056..36262	+	68	28197973	-	PD0029	-	hypothetical protein
29	 53.37	0	36277..37539	+	420	28197974	-	PD0030	-	hypothetical protein
30	 56.24	0	37722..38603	+	293	28197975	comJ	PD0031	-	transformation competence-related protein
31	 53.59	0	39197..39739	+	180	28197976	-	PD0032	-	hypothetical protein
32	 54.43	0	39807..43394	+	1195	28197977	mfd	PD0033	-	transcription-repair coupling factor
33	 52.35	0	44016..44462	+	148	77747624	aroQ	PD0034	-	3-dehydroquinate dehydratase
34	 53.70	0	44525..45010	+	161	28197979	accB	PD0035	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
35	 54.09	0	45068..46435	+	455	28197980	accC	PD0036	-	acetyl-CoA carboxylase biotin carboxylase subunit
36	 54.64	0	46613..48799	-	728	28197981	uvrD	PD0037	-	DNA-dependent helicase II
37	 47.40	0	50073..51266	+	397	28197982	hmpA	PD0038	-	nitric oxide dioxygenase
38	 46.47	-1	53116..53427	+	103	28197983	-	PD0039	-	hypothetical protein
39	 51.47	0	53424..54206	+	260	28197984	pdxJ	PD0040	-	pyridoxal phosphate biosynthetic protein PdxJ
40	 43.95	-1	54701..55774	-	357	28197985	korB	PD0041	-	transcriptional repressor
41	 51.65	0	56876..57601	-	241	28197986	comF	PD0042	-	competence protein F
42	 51.36	0	57651..58676	+	341	28197987	bioB	PD0043	-	biotin synthase
43	 50.91	0	59071..60111	+	346	28197988	-	PD0044	-	lipoprotein
44	 39.92	-2	60529..60771	+	80	28197989	-	PD0045	-	hypothetical protein
45	 53.78	0	60887..61786	-	299	28197990	ubiA	PD0046	-	4-hydroxybenzoate octaprenyltransferase
46	 52.08	0	71282..72097	+	271	28197991	mutM	PD0053	-	formamidopyrimidine-DNA glycosylase
47	 46.98	-1	72234..73076	-	280	28197992	-	PD0054	-	hypothetical protein
48	 48.98	0	73166..74533	+	455	28197993	ffh	PD0055	-	signal recognition particle protein
49	 45.16	-1	74857..75228	+	123	28197994	-	PD0056	-	hypothetical protein
50	 51.75	0	75271..76068	+	265	28197995	-	PD0057	-	hypothetical protein
51	 49.75	0	76380..77360	-	326	77747625	mrkD	PD0058	-	fimbrial adhesin precursor
52	 52.63	0	79042..81555	-	837	28197997	fimD	PD0060	-	outer membrane usher protein precursor
53	 48.69	0	81774..82574	-	266	28197998	-	PD0061	-	chaperone protein precursor
54	 52.61	0	82646..83200	-	184	28197999	-	PD0062	-	fimbrial subunit precursor
55	 53.17	0	84808..85296	-	162	28198000	-	PD0063	-	hypothetical protein
56	 51.53	0	85376..86683	-	435	28198001	kgtP	PD0064	-	alpha-ketoglutarate permease symporter
57	 53.81	0	86732..88084	-	450	28198002	-	PD0065	-	GTP-binding protein
58	 45.52	-1	88099..88377	-	92	28198003	hfq	PD0066	-	RNA-binding protein Hfq
59	 53.25	0	88481..89434	-	317	28198004	miaA	PD0067	-	tRNA delta(2)-isopentenylpyrophosphate transferase
60	 54.96	0	89434..90330	-	298	28198005	folP	PD0068	-	dihydropteroate synthase
61	 48.31	0	90431..90637	+	68	28198006	-	PD0069	-	hypothetical protein
62	 51.14	0	90639..92576	-	645	28198007	hflB	PD0070	-	cell division protein
63	 49.69	0	92623..93264	-	213	28198008	ftsJ	PD0071	-	cell division protein
64	 47.39	0	93334..93639	+	101	28198009	-	PD0072	-	hypothetical protein
65	 53.54	0	93658..94038	+	126	28198010	-	PD0073	-	hypothetical protein
66	 54.50	0	94622..96454	-	610	28198011	ilvD	PD0074	-	dihydroxy-acid dehydratase
67	 59.60	+1	97444..97641	+	65	77747626	-	PD0075	-	hypothetical protein
68	 56.85	0	97642..98772	+	376	28198013	-	PD0076	-	glycosyl transferase
69	 55.93	0	98753..100084	+	443	28198014	-	PD0077	-	membrane protein
70	 56.13	0	100273..101193	-	306	28198015	htrB	PD0078	-	lipid A biosynthesis lauroyl acyltransferase
71	 54.00	0	101272..102582	+	436	28198016	kdtA	PD0079	-	3-deoxy-D-manno-octulosonic-acid transferase
72	 51.63	0	102966..104348	+	460	28198017	-	PD0080	-	hypothetical protein
73	 54.02	0	104564..104824	+	86	28198018	rpsP	PD0081	-	30S ribosomal protein S16
74	 51.85	0	104868..105380	+	170	28198019	rimM	PD0082	-	16S rRNA-processing protein
75	 53.05	0	105490..106275	+	261	28198020	trmD	PD0083	-	tRNA (guanine-N(1)-)-methyltransferase
76	 48.91	0	106440..106850	+	136	28198021	rplS	PD0084	-	50S ribosomal protein L19
77	 53.33	0	107274..108053	+	259	77747627	map	PD0085	-	methionine aminopeptidase
78	 54.08	0	108793..109626	+	277	161484690	dapD	PD0086	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
79	 47.90	0	109641..109997	+	118	28198024	-	PD0087	-	hypothetical protein
80	 56.61	0	110153..111286	+	377	28198025	dapE	PD0088	-	succinyl-diaminopimelate desuccinylase
81	 54.96	0	111688..113379	+	563	28198026	asnB	PD0089	-	asparagine synthetase B
82	 49.76	0	113437..114465	-	342	28198027	-	PD0090	-	hypothetical protein
83	 58.24	+1	115511..116542	+	343	28198028	-	PD0091	-	hypothetical protein
84	 52.52	0	117015..117650	+	211	28198029	lexA	PD0092	-	LexA repressor
85	 51.25	0	117832..118875	+	347	28198030	recA	PD0093	-	recombinase A
86	 52.50	0	119363..122017	+	884	28198031	alaS	PD0094	-	alanyl-tRNA synthetase
87	 49.07	0	122156..122371	+	71	28198032	csrA	PD0095	-	carbon storage regulator
88	 56.40	0	123486..125510	-	674	28198033	prlC	PD0097	-	oligopeptidase A
89	 56.73	0	125570..126676	-	368	28198034	cysK	PD0098	-	cysteine synthase
90	 59.79	+1	127195..127572	+	125	77747629	-	PD0099	-	hypothetical protein
91	 57.72	+1	127660..129492	+	610	28198036	copA	PD0100	-	copper resistance protein A precursor
92	 60.22	+1	129489..130418	+	309	28198037	copB	PD0101	-	copper resistance protein B precursor
93	 58.73	+1	130675..133659	-	994	28198038	valS	PD0102	-	valyl-tRNA synthetase
94	 51.79	0	133712..133906	-	64	28198039	-	PD0103	-	hypothetical protein
95	 60.56	+1	133969..134394	-	141	28198040	holC	PD0104	-	DNA polymerase III subunit chi
96	 43.59	-1	134394..134861	-	155	28198041	-	PD0105	-	hypothetical protein
97	 61.72	+1	134840..136315	-	491	28198042	pepA	PD0106	-	leucyl aminopeptidase
98	 55.43	0	136425..137510	+	361	28198043	-	PD0107	-	hypothetical protein
99	 53.57	0	137507..138613	+	368	28198044	-	PD0108	-	hypothetical protein
100	 59.28	+1	138531..139085	-	184	28198045	-	PD0109	-	hypothetical protein
52.22	MEAN

5.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.