IslandPath Analysis: Coxiella burnetii RSA 493



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.64   STD DEV: 5.06
Coxiella burnetii RSA 493, complete genome - 1..1995281
2016 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.69	0	140..1495	+	451	29653365	dnaA	CBU_0001	-	chromosomal replication initiator protein DnaA
2	 43.60	0	1639..2748	+	369	29653366	dnaN	CBU_0002	-	DNA polymerase III, beta subunit
3	 43.21	0	2723..3826	+	367	29653367	recF	CBU_0003	-	DNA replication and repair protein RecF
4	 46.97	0	4128..6554	+	808	29653368	gyrB	CBU_0004	-	DNA gyrase, B subunit
5	 44.62	0	6528..6722	-	64	29653369	-	CBU_0005	-	hypothetical protein
6	 48.92	+1	6759..7778	+	339	29653370	-	CBU_0006	-	IS1111A transposase
7	 30.99	-2	8186..8398	-	70	29653371	-	CBU_0007	-	hypothetical protein
8	 38.62	0	8716..8904	+	62	29653372	-	CBU_0008	-	hypothetical protein
9	 42.54	0	9560..10993	+	477	29653373	dacB	CBU_0009	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
10	 42.61	0	10986..11804	+	272	29653374	aroE	CBU_0010	-	shikimate 5-dehydrogenase
11	 23.81	-2	11893..11997	+	34	29653375	-	CBU_0011	-	hypothetical protein
12	 45.38	0	12148..12504	-	118	29653376	-	CBU_0012	-	hypothetical protein
13	 37.32	-1	12531..12956	-	141	29653377	-	CBU_0013	-	hypothetical protein
14	 43.70	0	13226..14479	-	417	29653378	-	CBU_0014	-	phosphate transporter family protein
15	 37.59	0	14592..15272	+	226	29653379	-	CBU_0015	-	hypothetical protein
16	 44.28	0	15274..16095	+	273	29653380	xapA	CBU_0016	-	xanthosine phosphorylase
17	 43.53	0	16092..16817	+	241	29653381	deoC	CBU_0017	-	deoxyribose-phosphate aldolase
18	 34.23	-1	16901..17344	+	147	29653382	-	CBU_0018	-	hypothetical protein
19	 53.15	+2	17457..17567	-	36	29653383	-	CBU_0019	-	hypothetical protein
20	 43.39	0	17575..18111	-	178	29653384	-	CBU_0020	-	ribosomal subunit interface protein domain/'cold-shock' DNA-binding domain protein
21	 36.01	-1	18337..20766	+	809	29653385	-	CBU_0021	-	hypothetical protein
22	 38.02	0	21004..21813	+	269	29653386	-	CBU_0022	-	hypothetical protein
23	 46.51	0	21819..22319	-	166	29653387	-	CBU_0023	-	hypothetical protein
24	 47.34	0	22459..22665	-	68	29653388	csrA-1	CBU_0024	-	carbon storage regulator
25	 44.72	0	22761..22883	-	40	29653389	-	CBU_0025	-	hypothetical protein
26	 46.15	0	23030..23692	-	220	29653390	rpiA	CBU_0026	-	ribose 5-phosphate isomerase A
27	 39.84	0	23834..24724	-	296	29653391	-	CBU_0027	-	acyltransferase family protein
28	 40.33	0	26405..27133	-	242	29653392	-	CBU_0029	-	acyltransferase family protein
29	 44.61	0	27090..28277	-	395	29653393	-	CBU_0030	-	hydroxymethylglutaryl-coenzyme A reductase
30	 47.82	+1	28376..29314	-	312	29653394	-	CBU_0031	-	short chain dehydrogenase/reductase family oxidoreductase
31	 49.46	+1	29546..29824	+	92	29653395	-	CBU_0032	-	hypothetical protein
32	 44.59	0	29917..30618	-	233	29653396	-	CBU_0033	-	hypothetical protein
33	 35.25	-1	30622..30882	-	86	29653397	-	CBU_0034	-	putative acyl carrier protein
34	 48.86	+1	30905..32179	-	424	29653398	-	CBU_0035	-	beta-ketoacyl-acyl-carrier-protein-synthase family protein
35	 40.00	0	32176..32655	-	159	29653399	-	CBU_0036	-	putative beta-hydroxyacyl-(acyl-carrier-protein) dehydratase
36	 46.28	0	32659..33276	-	205	161511219	fabA	CBU_0037	-	putative beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
37	 43.50	0	33474..34457	-	327	29653401	-	CBU_0038	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase III
38	 41.99	0	34538..36571	-	677	29653402	prlC	CBU_0039	-	oligopeptidase A
39	 48.92	+1	36695..37714	+	339	29653403	-	CBU_0040	-	IS1111A transposase
40	 39.94	0	38088..40220	-	710	29653404	-	CBU_0041	-	hypothetical protein
41	 38.47	0	40319..41350	-	343	29653405	hemH	CBU_0042	-	ferrochelatase
42	 48.09	+1	41407..42009	+	200	29653406	-	CBU_0043	-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
43	 46.48	0	42119..42871	+	250	29653407	-	CBU_0044	-	hypothetical protein
44	 47.77	+1	42968..43528	-	186	29653408	-	CBU_0045	-	putative lipoprotein
45	 45.06	0	45629..46609	-	326	29653409	-	CBU_0048	-	auxiliary transport protein, membrane fusion protein family
46	 39.66	0	46663..47973	-	436	29653410	-	CBU_0049	-	hypothetical protein
47	 40.63	0	48166..48768	-	200	29653411	-	CBU_0050	-	hypothetical protein
48	 35.19	-1	48793..49332	-	179	29653412	-	CBU_0051	-	hypothetical protein
49	 34.34	-1	49316..49414	-	32	29653413	-	CBU_0052	-	hypothetical protein
50	 47.47	0	49486..50235	+	249	29653414	-	CBU_0053	-	enhanced entry protein EnhA, putative
51	 45.52	0	50305..50862	+	185	29653415	-	CBU_0054	-	putative chorismate--pyruvate lyase
52	 44.33	0	50855..51718	+	287	29653416	ubiA	CBU_0055	-	4-hydroxybenzoate polyprenyl transferase
53	 47.65	0	51830..53680	+	616	29653417	-	CBU_0056	-	TolC family type I secretion outer membrane protein
54	 67.44	+2	53728..53856	+	42	29653418	-	CBU_0057	-	hypothetical protein
55	 38.71	0	53896..53988	+	30	29653419	-	CBU_0058	-	hypothetical protein
56	 41.27	0	53967..54092	+	41	29653420	-	CBU_0059	-	hypothetical protein
57	 41.11	0	54234..54593	+	119	29653421	-	CBU_0060	-	hypothetical protein
58	 40.52	0	54653..55849	+	398	29653422	-	CBU_0061	-	hypothetical protein
59	 38.11	0	55870..57375	+	501	29653423	-	CBU_0062	-	DnaJ domain-containing protein
60	 48.16	+1	57361..58635	-	424	29653424	kdtA	CBU_0063	-	3-deoxy-D-manno-octulosonic-acid transferase family protein
61	 46.21	0	58768..60678	+	636	29653425	parE	CBU_0064	-	DNA topoisomerase IV, B subunit
62	 44.53	0	60867..61241	+	124	29653426	-	CBU_0065	-	rhodanese domain-containing protein
63	 39.90	0	61633..62226	-	197	29653427	-	CBU_0066	-	5,10-methenyltetrahydrofolate synthetase
64	 42.90	0	62435..62758	-	107	29653428	-	CBU_0067	-	hypothetical protein
65	 35.83	-1	62755..62994	-	79	29653429	-	CBU_0068	-	hypothetical protein
66	 42.69	0	63382..63723	+	113	29653430	-	CBU_0069	-	hypothetical protein
67	 44.52	0	63732..64580	+	282	29653431	-	CBU_0070	-	hypothetical protein
68	 42.26	0	64571..65545	+	324	29653432	-	CBU_0071	-	hypothetical protein
69	 45.83	0	65611..66810	+	399	29653433	-	CBU_0072	-	ankyrin repeat-containing protein
70	 45.04	0	66900..68693	-	597	29653434	-	CBU_0073	-	peptidase, M24 family
71	 53.15	+2	68781..69002	-	73	29653435	-	CBU_0074	-	hypothetical protein
72	 47.28	0	69001..70233	+	410	29653436	ubiH	CBU_0075	-	2-polyprenyl-6-methoxyphenol 4-hydroxylase
73	 42.88	0	70223..71458	+	411	29653437	visC	CBU_0076	-	ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
74	 38.89	0	71573..72364	+	263	29653438	-	CBU_0077	-	hypothetical protein
75	 46.91	0	72399..72560	-	53	29653439	-	CBU_0078	-	hypothetical protein
76	 32.31	-2	72540..72929	+	129	29653440	-	CBU_0079	-	transcriptional regulator, putative
77	 37.47	-1	73046..73528	+	160	29653441	-	CBU_0080	-	hypothetical protein
78	 46.62	0	73564..75264	+	566	29653442	proS	CBU_0081	-	prolyl-tRNA synthetase
79	 38.52	0	75257..75391	-	44	29653443	-	CBU_0082	-	hypothetical protein
80	 47.10	0	75366..75503	+	45	29653444	-	CBU_0083	-	hypothetical protein
81	 42.93	0	75638..77554	+	638	29653445	-	CBU_0084	-	sulfatase domain-containing protein
82	 39.74	0	77808..77963	+	51	29653446	-	CBU_0085	-	entericidin B
83	 42.29	0	77974..78732	+	252	29653447	-	CBU_0086	-	amidohydrolase family protein
84	 40.64	0	78774..80690	+	638	29653448	-	CBU_0087	-	sulfatase
85	 47.92	+1	81688..81783	+	31	29653449	-	CBU_0089	-	hypothetical protein
86	 48.17	+1	82494..83807	+	437	29653450	tolB	CBU_0090	-	TolB protein
87	 48.45	+1	83856..84404	+	182	29653451	-	CBU_0091	-	putative peptidoglycan-associated lipoprotein
88	 42.19	0	84451..85308	+	285	29653452	-	CBU_0092	-	tol-pal system protein YbgF
89	 45.02	0	85311..85952	+	213	29653453	-	CBU_0093	-	radical SAM domain-containing protein
90	 44.69	0	86265..88844	+	859	29653454	clpB	CBU_0094	-	ATP-dependent chaperone ClpB
91	 42.21	0	88841..89809	+	322	29653455	-	CBU_0095	-	sodium/calcium antiporter family protein
92	 43.62	0	89793..90968	-	391	29653456	clS	CBU_0096	-	putative cardiolipin synthetase
93	 46.14	0	91430..92194	+	254	29653457	pssA	CBU_0097	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
94	 45.45	0	92194..93018	+	274	29653458	nadC	CBU_0098	-	nicotinate-nucleotide pyrophosphorylase
95	 51.48	+1	93689..94162	+	157	29653459	sixA	CBU_0099	-	phosphohistidine phosphatase SixA
96	 36.07	-1	94164..94565	+	133	29653460	-	CBU_0100	-	putative lipoprotein
97	 49.16	+1	94519..96129	-	536	29653461	nadB	CBU_0101	-	L-aspartate oxidase
98	 35.06	-1	96250..96423	-	57	29653462	-	CBU_0102	-	hypothetical protein
99	 45.05	0	96398..97840	-	480	29653463	-	CBU_0103	-	M20/M25/M40 family peptidase
100	 42.34	0	99613..99723	+	36	29653464	-	CBU_0106	-	hypothetical protein
42.64	MEAN

5.06	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.