IslandPath Analysis: Saccharopolyspora erythraea NRRL 2338



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.31   STD DEV: 3.11
Saccharopolyspora erythraea NRRL 2338, complete genome - 1..8212805
7197 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.49	0	1..1779	+	592	134096621	dnaA	SACE_0001	-	chromosomal replication initiation protein
2	 70.84	0	3031..4155	+	374	134096622	dnaN	SACE_0003	-	DNA polymerase III subunit beta
3	 70.41	0	4221..5102	+	293	134096623	gnd2	SACE_0004	-	6-phosphogluconate dehydrogenase-like protein
4	 72.87	0	5261..6436	+	391	134096624	recF	SACE_0005	-	recombination protein F
5	 76.44	+1	6543..7064	+	173	134096625	-	SACE_0006	-	hypothetical protein
6	 67.19	-1	8507..10399	+	630	134096626	gyrB	SACE_0008	-	DNA gyrase subunit B
7	 67.39	-1	10554..13049	+	831	134096627	gyrA	SACE_0009	-	DNA gyrase subunit A
8	 72.43	0	13104..13919	+	271	134096628	-	SACE_0010	-	hypothetical protein
9	 69.23	0	14150..14266	+	38	134096629	-	SACE_0011	-	hypothetical protein
10	 69.86	0	14813..15502	-	229	134096630	-	SACE_0012	-	TetR family transcriptional regulator
11	 69.65	0	15524..16966	+	480	134096631	-	SACE_0013	-	lignostilbene-alpha/beta-dioxygenase
12	 72.45	0	17128..20220	+	1030	134096632	mmpL10	SACE_0014	-	large membrane protein
13	 68.52	0	20297..22072	+	591	134096633	-	SACE_0015	-	acyl-CoA dehydrogenase
14	 73.21	0	22287..25007	+	906	134096634	-	SACE_0016	-	LuxR family transcriptional regulator
15	 71.04	0	25251..26165	-	304	134096635	-	SACE_0017	-	hypothetical protein
16	 71.06	0	26416..27711	+	431	134096636	-	SACE_0018	-	amine oxidase, flavin-containing
17	 65.97	-1	27746..28033	+	95	134096637	-	SACE_0019	-	AMP-dependent synthetase and ligase
18	 74.70	+1	28020..28928	+	302	134096638	-	SACE_0020	-	hypothetical protein
19	 73.41	0	28925..32869	+	1314	134096639	-	SACE_0021	-	beta keto-acyl synthase
20	 74.06	0	32878..35136	+	752	134096640	-	SACE_0022	-	beta keto-acyl synthase
21	 73.48	0	35138..42106	+	2322	134096641	-	SACE_0023	-	beta-ketoacyl synthase
22	 74.32	0	42128..43708	+	526	134096642	-	SACE_0024	-	2-nitropropane dioxygenase, NPD
23	 75.48	+1	43705..45474	+	589	134096643	-	SACE_0025	-	acyl-CoA dehydrogenase domain-containing protein
24	 73.58	0	45467..47173	+	568	134096644	accA	SACE_0026	-	acetyl carboxylase
25	 73.18	0	47170..47676	+	168	134096645	-	SACE_0027	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
26	 72.59	0	47679..49028	+	449	134096646	-	SACE_0028	-	acetyl-CoA carboxylase
27	 74.23	0	49183..49830	+	215	134096647	-	SACE_0029	-	RNA polymerase sigma factor
28	 75.61	+1	49905..50441	-	178	134096648	-	SACE_0030	-	ATP-dependent Clp protease ATP-binding subunit
29	 73.33	0	50444..50653	-	69	134096649	-	SACE_0031	-	hypothetical protein
30	 71.86	0	50707..51207	-	166	134096650	-	SACE_0032	-	hypothetical protein
31	 76.03	+1	51388..51921	-	177	134096651	-	SACE_0033	-	hypothetical protein
32	 67.63	-1	52106..52624	+	172	134096652	-	SACE_0034	-	putative peptidyl-prolyl cis-trans isomerase
33	 72.18	0	52773..53552	+	259	134096653	-	SACE_0035	-	rhomboid-like protein
34	 74.64	+1	53632..54045	-	137	134096654	-	SACE_0036	-	hypothetical protein
35	 62.92	-2	54265..54531	-	88	134096655	-	SACE_0037	-	putative septation inhibitor protein
36	 72.38	0	54727..55548	+	273	134096656	srtB	SACE_0038	-	putative sortase-like protein
37	 69.87	0	55548..55703	+	51	134096657	-	SACE_0039	-	hypothetical protein
38	 72.53	0	55773..56420	+	215	134096658	pabA	SACE_0040	-	putative p-aminobenzoate synthase glutamine amidotransferase
39	 64.19	-2	56488..57294	-	268	134096659	-	SACE_0041	-	transposase for IS3518
40	 66.59	-1	57533..58912	+	459	134096660	-	SACE_0042	-	transposase for IS3508i
41	 65.83	-1	58787..59143	-	118	134096661	-	SACE_0043	-	hypothetical protein
42	 69.16	0	59398..61359	-	653	134096662	pknB	SACE_0044	-	serine/threonine protein kinase
43	 72.31	0	61418..62728	-	436	134096663	pknA	SACE_0045	-	putative serine/threonine protein kinase
44	 69.08	0	62732..64183	-	483	134096664	-	SACE_0046	-	peptidoglycan glycosyltransferase
45	 68.06	-1	64180..65616	-	478	134096665	ftsW2	SACE_0047	-	putative cell division protein
46	 70.61	0	65616..67034	-	472	134096666	-	SACE_0048	-	protein serine/threonine phosphatases
47	 67.96	-1	67031..67495	-	154	134096667	-	SACE_0049	-	FHA domain-containing protein
48	 70.47	0	67549..68862	-	437	134096668	-	SACE_0050	-	FHA domain-containing protein
49	 72.65	0	69439..70440	-	333	134096669	-	SACE_0051	-	putative exported phosphatase
50	 72.57	0	70473..72014	-	513	134096670	phoD	SACE_0052	-	phosphodiesterase/alkaline phosphatase D
51	 70.16	0	72170..72970	-	266	134096671	-	SACE_0053	-	beta-lactamase fold-like Zn-dependent hydrolase
52	 74.24	0	73710..75083	-	457	134096672	-	SACE_0054	-	pyridoxal-dependent decarboxylase family protein, putative
53	 70.83	0	75724..75891	+	55	134096673	-	SACE_0055	-	hypothetical protein
54	 70.64	0	75994..77856	+	620	134096674	-	SACE_0056	-	putative ABC transporter ATP-binding protein
55	 71.38	0	77915..79144	-	409	134096675	-	SACE_0057	-	monooxygenase, FAD-binding
56	 71.68	0	79288..80145	-	285	134096676	-	SACE_0058	-	putative acetyltransferase
57	 72.62	0	80445..81233	+	262	134096677	-	SACE_0059	-	IclR family transcriptional regulator
58	 72.46	0	81429..82067	+	212	134096678	-	SACE_0060	-	hypothetical protein
59	 74.28	0	82124..82780	+	218	134096679	-	SACE_0061	-	NAD-dependent epimerase/dehydratase
60	 73.15	0	83325..83432	+	35	134096680	-	SACE_0062	-	hypothetical protein
61	 72.50	0	83918..85219	-	433	134096681	-	SACE_0063	-	FAD-linked oxidoreductase
62	 75.17	+1	85308..86507	+	399	134096682	-	SACE_0064	-	amino acid aldolase or racemase-like
63	 69.60	0	86477..87055	-	192	134096683	-	SACE_0065	-	TetR family transcriptional regulator
64	 73.59	0	87704..91024	+	1106	134096684	-	SACE_0066	-	hypothetical protein
65	 73.16	0	91437..91775	-	112	134096685	-	SACE_0067	-	hypothetical protein
66	 72.22	0	91789..92040	-	83	134096686	-	SACE_0068	-	hypothetical protein
67	 67.96	-1	92323..93633	+	436	134096687	-	SACE_0069	-	regulator
68	 70.59	0	93764..94654	+	296	134096688	-	SACE_0070	-	aminoglycoside phosphotransferase
69	 69.58	0	94800..95108	+	102	134096689	-	SACE_0071	-	hypothetical protein
70	 74.47	+1	95113..96060	-	315	134096690	mphB	SACE_0072	-	macrolide 2'-phosphotransferase
71	 74.20	0	96483..97013	-	176	134096691	-	SACE_0073	-	copper resistance protein
72	 73.25	0	97010..97768	-	252	134096692	-	SACE_0074	-	hypothetical protein
73	 69.73	0	97869..98423	-	184	134096693	-	SACE_0075	-	hypothetical protein
74	 67.02	-1	98700..100385	+	561	134096694	-	SACE_0076	-	BCCT family glycine betaine transporter
75	 69.75	0	100390..101037	+	215	134096695	-	SACE_0077	-	ABC quaternary amine transporter, permease component
76	 70.92	0	101030..102205	+	391	134096696	-	SACE_0078	-	putative ABC transporter ATP-binding protein
77	 70.57	0	102202..102969	+	255	134096697	-	SACE_0079	-	quaternary amine ABC transporter permease
78	 68.78	0	102966..103961	+	331	134096698	-	SACE_0080	-	glycine betaine/carnitine/choline binding protein precursor
79	 74.76	+1	104011..104319	-	102	134096699	-	SACE_0081	-	hypothetical protein
80	 74.53	+1	104560..105042	-	160	134096700	-	SACE_0082	-	hypothetical protein
81	 66.05	-1	105198..106013	-	271	134096701	-	SACE_0083	-	lipase
82	 75.05	+1	106145..107527	-	460	134096702	-	SACE_0084	-	EmrB/QacA family drug resistance transporter
83	 76.86	+1	107633..108427	-	264	134096703	-	SACE_0085	-	ArsR family transcriptional regulator
84	 75.35	+1	108471..109115	-	214	134096704	-	SACE_0086	-	hypothetical protein
85	 74.01	0	109281..110915	+	544	134096705	-	SACE_0087	-	hypothetical protein
86	 65.92	-1	110943..111611	-	222	134096706	-	SACE_0088	-	hypothetical protein
87	 66.94	-1	111623..111985	-	120	134096707	-	SACE_0089	-	hypothetical protein
88	 71.11	0	112001..112315	-	104	134096708	-	SACE_0090	-	hypothetical protein
89	 71.03	0	112312..112632	-	106	134096709	-	SACE_0091	-	hypothetical protein
90	 72.20	0	112868..113626	-	252	134096710	-	SACE_0092	-	short-chain dehydrogenase/reductase SDR
91	 72.50	0	113835..113954	-	39	134096711	-	SACE_0093	-	hypothetical protein
92	 72.59	0	114171..115133	-	320	134096712	-	SACE_0094	-	aldo/keto reductase family oxidoreductase
93	 70.03	0	115409..116599	+	396	134096713	rkpK	SACE_0095	-	UDP-glucose 6-dehydrogenase protein
94	 75.58	+1	117071..118876	+	601	134096714	ggt1	SACE_0096	-	putative gamma-glutamyl transferase
95	 72.24	0	119077..121176	+	699	134096715	-	SACE_0097	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
96	 76.56	+1	121204..122355	-	383	134096716	glxK	SACE_0098	-	glycerate kinase
97	 75.60	+1	122370..123881	-	503	134096717	-	SACE_0099	-	integral membrane transporter
98	 75.52	+1	124047..124961	-	304	134096718	-	SACE_0100	-	DMT family permease
99	 70.14	0	125201..125863	-	220	134096719	-	SACE_0101	-	two component system response regulator
100	 71.27	0	125860..127314	-	484	134096720	-	SACE_0102	-	two component sensor kinase
71.31	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.