version 1.0
Helicobacter pylori P12, complete genome - 1..1673813 1567 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 41.01 0 13..429 - 138 210134202 nusB HPP12_0001 - N utilization substance protein B 2 46.71 +2 431..901 - 156 210134203 - HPP12_0002 - riboflavin synthase beta chain 3 44.16 +1 911..1741 - 276 210134204 kdsA HPP12_0003 - 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase 4 39.49 0 1728..2393 - 221 210134205 - HPP12_0004 - beta-carbonic anhydrase 5 40.06 0 2515..3198 + 227 210134206 pyrF HPP12_0005 - orotidine 5'-phosphate decarboxylase 6 42.24 0 3199..4029 + 276 210134207 panC HPP12_0006 - pantoate-beta-alanine ligase 7 43.67 +1 5068..7167 - 699 210134208 hopZ HPP12_0007 - outer membrane protein HopZ 8 45.64 +1 7486..9126 - 546 210134209 groEL HPP12_0008 - chaperone and heat shock protein 9 40.62 0 9151..9507 - 118 210134210 groES HPP12_0009 - cochaperone 10 39.40 0 9795..11474 + 559 210134211 dnaG HPP12_0010 - DNA primase DnaG 11 40.36 0 11471..12523 + 350 210134212 - HPP12_0011 - argininosuccinate synthase 12 38.89 0 12615..13442 + 275 210134213 - HPP12_0012 - hypothetical protein 13 39.36 0 13587..13868 + 93 210134214 comB2 HPP12_0013 - ComB2 competence protein 14 33.71 -1 13868..14131 + 87 210134215 comB3 HPP12_0014 - ComB3 competence protein 15 37.90 0 14133..16496 + 787 210134216 comB4 HPP12_0015 - ComB4 competence protein 16 39.79 0 16729..18138 + 469 210134217 - HPP12_0016 - hypothetical protein 17 40.27 0 18238..19203 + 321 210134218 cheV-1 HPP12_0017 - chemotaxis signal transduction protein CheV 18 43.10 +1 19200..20417 + 405 210134219 nspC HPP12_0018 - carboxynorspermidine decarboxylase 19 43.23 +1 20436..21011 - 191 210134220 - HPP12_0019 - lipid A 1-phosphatase 20 39.27 0 21022..22587 - 521 210134221 - HPP12_0020 - integral membrane protein 21 44.59 +1 23206..25338 - 710 210134222 hopD HPP12_0021 - outer membrane protein HopD 22 44.65 +1 25872..27152 - 426 210134223 gltA HPP12_0022 - citrate synthase 23 42.96 +1 27354..28631 + 425 210134224 icd HPP12_0023 - isocitrate dehydrogenase 24 38.20 0 28693..29226 + 177 210134225 - HPP12_0024 - hypothetical protein 25 39.42 0 29203..29859 - 218 210134226 bioD HPP12_0025 - dethiobiotin synthetase 26 36.17 0 29863..31623 - 586 210134227 - HPP12_0026 - hypothetical protein 27 39.13 0 31734..32147 + 137 210134228 - HPP12_0027 - hypothetical protein 28 44.57 +1 32183..32458 + 91 210134229 clpS HPP12_0028 - ATP-dependent clp protease adapter protein ClpS 29 40.07 0 32458..34683 + 741 210134230 clpA HPP12_0029 - ATP-dependent clp protease 30 41.88 0 34673..35023 + 116 210134231 panD HPP12_0030 - aspartate alpha-decarboxylase precursor 31 38.10 0 35034..35327 + 97 210134232 - HPP12_0031 - hypothetical protein 32 39.10 0 35327..36331 + 334 210134233 - HPP12_0032 - hypothetical protein 33 38.73 0 36339..37394 + 351 210134234 comB6 HPP12_0033 - ComB6 competence protein 34 36.84 0 37410..37523 + 37 210134235 comb7 HPP12_0034 - Comb7 competence protein 35 40.46 0 37520..38263 + 247 210134236 comB8 HPP12_0035 - ComB8 competence protein 36 36.37 0 38263..39249 + 328 210134237 comB9 HPP12_0036 - ComB9 competence protein 37 42.04 0 39242..40378 + 378 210134238 comB10 HPP12_0037 - ComB10 competence protein 38 39.47 0 40448..41767 + 439 210134239 - HPP12_0038 - bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase 39 40.66 0 41888..43033 + 381 210134240 gmd HPP12_0039 - GDP-D-mannose dehydratase 40 40.51 0 43026..43958 + 310 210134241 - HPP12_0040 - GDP-fucose synthetase 41 42.04 0 44876..45874 - 332 210134242 hypE HPP12_0041 - hydrogenase expression/formation protein 42 41.12 0 45877..48150 - 757 210134243 hypF HPP12_0042 - transcriptional regulatory protein HypF 43 40.28 0 48126..49118 - 330 210134244 - HPP12_0043 - peptidylarginine deiminase domain-containing protein 44 40.26 0 49177..49869 - 230 210134245 dpnA HPP12_0044 - adenine specific DNA methyltransferase 45 39.33 0 49866..50933 - 355 210134246 ddeM HPP12_0045 - cytosine specific DNA methyltransferase 46 34.97 -1 50930..52153 - 407 210134247 - HPP12_0046 - restriction endonuclease 47 29.48 -2 52297..53568 - 423 210134248 - HPP12_0047 - type II R-M system restriction endonuclease 48 32.20 -1 53568..56036 - 822 210134249 - HPP12_0048 - type II R-M system methyltransferase 49 42.72 0 56076..57566 - 496 210134250 putP HPP12_0049 - sodium/proline symporter 50 40.81 0 57593..61150 - 1185 210134251 putA HPP12_0050 - proline/delta 1-pyrroline-5-carboxylate dehydrogenase 51 40.00 0 61472..61681 + 69 210134252 - HPP12_0051 - hypothetical protein 52 33.33 -1 61982..62353 + 123 210134253 - HPP12_0052 - hypothetical protein 53 32.73 -1 62425..62589 + 54 210134254 - HPP12_0053 - hypothetical protein 54 34.92 -1 62547..62735 + 62 210134255 - HPP12_0054 - hypothetical protein 55 36.62 0 62737..63678 + 313 210134256 - HPP12_0055 - hypothetical protein 56 38.95 0 63713..64477 + 254 210134257 - HPP12_0056 - hypothetical protein 57 39.22 0 64478..64630 + 50 210134258 - HPP12_0057 - hypothetical protein 58 34.88 -1 64688..64816 + 42 210134259 - HPP12_0058 - hypothetical protein 59 37.68 0 64944..65150 + 68 210134260 - HPP12_0059 - hypothetical protein 60 40.11 0 65194..66138 + 314 210134261 - HPP12_0060 - hypothetical protein 61 39.36 0 66135..66698 + 187 210134262 - HPP12_0061 - hypothetical protein 62 40.61 0 66714..66974 + 86 210134263 - HPP12_0062 - hypothetical protein 63 40.15 0 67070..67612 + 180 210134264 - HPP12_0063 - hypothetical protein 64 38.19 0 67609..68493 + 294 210134265 - HPP12_0064 - hypothetical protein 65 38.73 0 68463..68888 + 141 210134266 - HPP12_0065 - hypothetical protein 66 37.93 0 68890..69237 + 115 210134267 - HPP12_0066 - hypothetical protein 67 40.33 0 69230..69658 + 142 210134268 - HPP12_0067 - ATP-binding protein 68 35.83 0 69809..70129 + 106 210134269 - HPP12_0068 - ATP-binding protein 69 47.62 +2 70221..70346 + 41 210134270 - HPP12_0069 - ATP-binding protein 70 41.49 0 70353..71651 + 432 210134271 - HPP12_0070 - ATP-binding protein 71 43.86 +1 71708..72505 - 265 210134272 ureH HPP12_0071 - urease accessory protein UreH 72 44.33 +1 72505..73104 - 199 210134273 ureG HPP12_0072 - urease accessory protein UreG 73 39.74 0 73133..73897 - 254 210134274 ureF HPP12_0073 - urease accessory protein UreF 74 40.35 0 73909..74421 - 170 210134275 ureE HPP12_0074 - urease accessory protein UreE 75 43.88 +1 74423..75010 - 195 210134276 ureI HPP12_0075 - urease accessory protein UreI 76 44.09 +1 75203..76912 - 569 210134277 ureB HPP12_0076 - urease B subunit 77 41.42 0 76916..77632 - 238 210134278 ureA HPP12_0077 - urease A subunit 78 37.97 0 77977..78450 - 157 210134279 lspA HPP12_0078 - lipoprotein signal peptidase 79 41.63 0 78444..79781 - 445 210134280 - HPP12_0079 - phosphoglucosamine mutase 80 39.26 0 79871..80140 + 89 210134281 rpsT HPP12_0080 - ribosomal protein S20 81 43.81 +1 80264..81322 + 352 210134282 prfA HPP12_0081 - peptide chain release factor RF-1 82 42.25 0 81711..81968 + 85 210134283 - HPP12_0082 - hypothetical protein 83 44.23 +1 81979..83373 + 464 210134284 horA HPP12_0083 - outer membrane protein HorA 84 42.27 0 83620..85365 + 581 210134285 - HPP12_0084 - hypothetical protein 85 39.13 0 85777..87726 - 649 210134286 - HPP12_0085 - methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 86 41.79 0 87954..88343 - 129 210134287 rpsI HPP12_0086 - 30S ribosomal protein S9 87 41.78 0 88340..88765 - 141 210134288 rplM HPP12_0087 - 50S ribosomal protein L13 88 37.57 0 89077..89265 - 62 210134289 - HPP12_0088 - hypothetical protein 89 40.65 0 89272..90624 - 450 210134290 - HPP12_0089 - malate:quinone oxidoreductase 90 39.59 0 90678..92051 - 457 210134291 - HPP12_0090 - hypothetical protein 91 38.47 0 92072..94114 - 680 210134292 rpoD HPP12_0091 - RNA polymerase sigma-80 factor 92 42.67 0 94303..94998 - 231 210134293 - HPP12_0092 - bifunctional 5'-methylthioadenosine nucleosidase 93 42.26 0 95009..95938 - 309 210134294 fabD HPP12_0093 - malonyl coenzyme A-acyl carrier protein transacylase 94 31.15 -2 96364..97140 + 258 210134295 - HPP12_0094 - type II R-M system restriction endonuclease 95 38.40 0 97190..98038 + 282 210134296 - HPP12_0095 - type II R-M system methyltransferase 96 40.00 0 98045..98944 - 299 210134297 - HPP12_0096 - alpha-1,2-fucosyltransferase 97 37.48 0 99044..99574 - 176 210134298 - HPP12_0097 - hypothetical protein 98 40.53 0 99647..100591 + 314 210134299 - HPP12_0098 - D-2-hydroxyacid dehydrogenase 99 41.32 0 100797..101510 - 237 210134300 - HPP12_0099 - hypothetical protein 100 41.03 0 101617..103071 - 484 210134301 thrC HPP12_0100 - threonine synthase 39.03 MEAN 3.70 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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