IslandPath Analysis: Nitrosococcus oceani ATCC 19707



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.53   STD DEV: 4.64
Nitrosococcus oceani ATCC 19707, complete genome - 1..3481691
2974 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.19	-1	175..1524	+	449	77163562	-	Noc_0001	-	chromosomal replication initiator protein, DnaA
2	 39.58	-2	2396..3499	+	367	77163563	-	Noc_0002	-	DNA-directed DNA polymerase
3	 52.33	0	10544..11101	-	185	77163564	-	Noc_0017	-	transposase ISY100e
4	 42.03	-1	11319..12410	+	363	77163565	-	Noc_0018	-	RecF protein
5	 44.06	-1	12438..14861	+	807	77163566	-	Noc_0019	-	DNA gyrase, B subunit
6	 44.87	-1	14920..15621	+	233	77163567	-	Noc_0020	-	hypothetical protein
7	 46.92	0	17144..18151	-	335	77163568	-	Noc_0021	-	fructose-1,6-bisphosphatase
8	 49.69	0	18366..19184	-	272	77163569	-	Noc_0022	-	formylmethanofuran dehydrogenase
9	 46.50	0	19267..20124	-	285	77163570	-	Noc_0023	-	tetrahydromethanopterin formyltransferase
10	 46.32	0	20172..21842	-	556	77163571	-	Noc_0024	-	DNA/RNA non-specific endonuclease
11	 50.94	0	21857..23134	-	425	77163572	-	Noc_0025	-	formylmethanofuran dehydrogenase
12	 49.67	0	23322..23927	-	201	77163573	-	Noc_0026	-	hypothetical protein
13	 47.95	0	23931..25688	-	585	77163574	argS	Noc_0027	-	arginyl-tRNA synthetase
14	 50.88	0	25794..28004	-	736	77163575	-	Noc_0028	-	primosome assembly protein PriA
15	 51.71	0	28110..28664	-	184	77163576	-	Noc_0029	-	DJ-1
16	 45.45	-1	28738..30057	-	439	77163577	-	Noc_0030	-	peptidase S41A
17	 47.68	0	30469..32022	-	517	77163578	-	Noc_0031	-	phosphoglyceromutase
18	 48.19	0	32678..33424	+	248	77163579	-	Noc_0032	-	rhodanese-like protein
19	 47.67	0	33428..33685	+	85	77163580	-	Noc_0033	-	glutaredoxin GrxC
20	 46.06	0	33751..34245	+	164	77163581	-	Noc_0034	-	preprotein translocase subunit SecB
21	 51.21	0	34256..35290	+	344	77163582	-	Noc_0035	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
22	 45.78	-1	35307..36278	+	323	77163583	-	Noc_0036	-	hypothetical protein
23	 49.75	0	36273..37454	-	393	77163584	-	Noc_0037	-	hypothetical protein
24	 48.88	0	37544..38032	-	162	77163585	-	Noc_0038	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
25	 43.92	-1	38038..38415	-	125	77163586	-	Noc_0039	-	dihydroneopterin aldolase family protein
26	 49.49	0	38533..39126	+	197	77163587	-	Noc_0040	-	hypothetical protein
27	 52.68	0	39123..40130	-	335	77163588	-	Noc_0041	-	O-sialoglycoprotein endopeptidase
28	 55.09	0	40548..40763	+	71	77163589	-	Noc_0042	-	ribosomal protein S21
29	 51.17	0	40801..41271	+	156	77163590	-	Noc_0043	-	hypothetical protein
30	 49.68	0	41378..43102	+	574	77163591	-	Noc_0044	-	DNA primase
31	 47.87	0	43212..45020	+	602	77163592	-	Noc_0045	-	hypothetical protein
32	 51.19	0	45851..46606	+	251	77163593	-	Noc_0046	-	Phage integrase
33	 42.40	-1	46609..47358	+	249	77163594	-	Noc_0047	-	hypothetical protein
34	 52.98	0	47396..47731	+	111	77163595	-	Noc_0048	-	transposase
35	 47.43	0	47706..48230	+	174	77163596	-	Noc_0049	-	IS630 family transposase
36	 47.62	0	48776..49048	+	90	77163597	-	Noc_0050	-	hypothetical protein
37	 54.71	0	49045..49437	+	130	77163598	-	Noc_0051	-	hypothetical protein
38	 60.67	+2	49434..50033	+	199	77163599	-	Noc_0052	-	hypothetical protein
39	 57.31	+1	50043..51848	+	601	77163600	-	Noc_0053	-	TOPRIM domain-containing protein
40	 59.57	+1	51909..52556	-	215	77163601	-	Noc_0054	-	hypothetical protein
41	 48.80	0	53559..54056	+	165	77163602	-	Noc_0055	-	hypothetical protein
42	 59.05	+1	54071..57892	+	1273	77163603	-	Noc_0056	-	hypothetical protein
43	 54.32	0	57899..59566	+	555	77163604	-	Noc_0057	-	hypothetical protein
44	 52.78	0	59633..59992	+	119	77163605	-	Noc_0058	-	hypothetical protein
45	 50.95	0	59989..62832	+	947	77163606	-	Noc_0059	-	hypothetical protein
46	 41.92	-1	62833..63705	+	290	77163607	-	Noc_0060	-	ATP-binding region, ATPase-like
47	 42.93	-1	63723..64097	+	124	77163608	-	Noc_0061	-	hypothetical protein
48	 43.12	-1	64087..64638	+	183	77163609	-	Noc_0062	-	PilT-like protein
49	 60.64	+2	64658..67546	+	962	77163610	-	Noc_0063	-	Type III restriction enzyme, res subunit
50	 53.93	0	67546..69540	+	664	77163611	-	Noc_0064	-	hypothetical protein
51	 51.30	0	69540..70307	+	255	77163612	-	Noc_0065	-	hypothetical protein
52	 52.93	0	70800..71636	-	278	77163613	-	Noc_0066	-	TrfA-related protein
53	 52.68	0	72989..73324	+	111	77163614	-	Noc_0070	-	transposase
54	 47.24	0	73299..73823	+	174	77163615	-	Noc_0071	-	IS630 family transposase
55	 49.87	0	74779..75159	+	126	77163616	-	Noc_0073	-	putative transposase
56	 47.04	0	75203..75625	+	140	77163617	-	Noc_0074	-	putative transposase
57	 60.35	+2	75986..77884	-	632	77163618	-	Noc_0076	-	DNA helicase II
58	 48.11	0	78286..79368	+	360	77163619	-	Noc_0077	-	C4-dicarboxylate transporter/malic acid transport protein
59	 55.35	+1	79413..85016	-	1867	77163620	-	Noc_0078	-	excinuclease ABC subunit A
60	 63.53	+2	85072..85677	-	201	77163621	-	Noc_0079	-	DNA-3-methyladenine glycosylase II
61	 39.75	-2	86929..87738	+	269	77163622	-	Noc_0081	-	hypothetical protein
62	 46.29	0	87829..88731	+	300	77163623	-	Noc_0082	-	sulfotransferase
63	 48.11	0	88891..89154	+	87	77163624	-	Noc_0083	-	hypothetical protein
64	 51.48	0	89144..89413	+	89	77163625	-	Noc_0084	-	hypothetical protein
65	 49.51	0	89460..89768	+	102	77163626	-	Noc_0085	-	hypothetical protein
66	 47.26	0	89746..89982	+	78	77163627	-	Noc_0086	-	helix-turn-helix protein, CopG
67	 40.28	-2	90148..90867	+	239	77163628	-	Noc_0087	-	hypothetical protein
68	 40.48	-2	91778..92896	+	372	77163629	-	Noc_0089	-	nitrite reductase (NO-forming)
69	 42.90	-1	92886..93251	+	121	77163630	-	Noc_0090	-	hypothetical protein
70	 47.31	0	94010..94753	+	247	77163631	-	Noc_0092	-	hypothetical protein
71	 55.26	+1	95115..95894	+	259	77163632	-	Noc_0093	-	glucose/ribitol dehydrogenase
72	 54.10	0	95970..96542	+	190	77163633	-	Noc_0094	-	NADPH-dependent FMN reductase
73	 46.97	0	97214..97411	+	65	77163634	-	Noc_0096	-	hypothetical protein
74	 47.39	0	97494..98048	+	184	77163635	-	Noc_0097	-	hypothetical protein
75	 48.95	0	98555..99265	+	236	77163636	-	Noc_0098	-	hypothetical protein
76	 52.50	0	99270..100871	+	533	77163637	-	Noc_0099	-	glycoside hydrolase family protein
77	 47.95	0	100934..102397	+	487	77163638	glgA	Noc_0100	-	glycogen synthase
78	 55.62	+1	102414..104069	+	551	77163639	-	Noc_0101	-	ferredoxin-dependent glutamate synthase
79	 50.63	0	104323..104952	-	209	77163640	-	Noc_0102	-	CBS domain-containing protein
80	 48.99	0	105189..105731	-	180	77163641	-	Noc_0103	-	hypothetical protein
81	 51.35	0	106087..107157	-	356	77163642	-	Noc_0104	-	membrane-bound metal-dependent hydrolase
82	 52.05	0	107269..108123	-	284	77163643	-	Noc_0105	-	hypothetical protein
83	 40.18	-2	108238..108792	-	184	77163644	-	Noc_0106	-	hypothetical protein
84	 55.99	+1	108917..109843	-	308	77163645	-	Noc_0107	-	NAD-dependent epimerase/dehydratase
85	 48.96	0	109886..110800	+	304	77163646	-	Noc_0108	-	MscS mechanosensitive ion channel
86	 51.90	0	111011..111931	-	306	77163647	-	Noc_0109	-	formate/nitrite transporter
87	 41.86	-1	112457..112972	-	171	77163648	-	Noc_0110	-	hypothetical protein
88	 52.04	0	113444..116266	+	940	77163649	kgd	Noc_0111	-	alpha-ketoglutarate decarboxylase
89	 54.28	0	116282..117589	+	435	77163650	-	Noc_0112	-	dihydrolipoamide succinyltransferase
90	 53.36	0	117611..119053	+	480	77163651	-	Noc_0113	-	dihydrolipoamide dehydrogenase
91	 49.72	0	119410..120861	-	483	77163652	-	Noc_0114	-	di-haem cytochrome c peroxidase
92	 53.04	0	121067..122944	-	625	77163653	-	Noc_0115	-	ABC transporter, transmembrane region
93	 49.17	0	123578..124543	-	321	77163654	-	Noc_0116	-	hypothetical protein
94	 52.46	0	124788..126110	-	440	77163655	-	Noc_0117	-	hypothetical protein
95	 51.77	0	126114..127442	-	442	77163656	-	Noc_0118	-	hypothetical protein
96	 50.24	0	127637..128251	+	204	77163657	-	Noc_0119	-	hypothetical protein
97	 55.71	+1	128393..128830	+	145	77163658	-	Noc_0120	-	hypothetical protein
98	 46.50	0	129007..129249	-	80	77163659	-	Noc_0121	-	hypothetical protein
99	 50.26	0	129464..130822	+	452	77163660	-	Noc_0122	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
100	 52.60	0	130896..131627	+	243	77163661	-	Noc_0123	-	hypothetical protein
50.53	MEAN

4.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.