IslandPath Analysis: Lactobacillus casei ATCC 334



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.68   STD DEV: 3.62
Lactobacillus casei ATCC 334, complete genome - 1..2895264
2751 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.85	0	81..1430	+	449	116493575	-	LSEI_0001	-	DNA replication ATPase initiation
2	 44.65	0	1603..2742	+	379	116493576	-	LSEI_0002	-	DNA polymerase sliding clamp subunit
3	 53.99	+2	3320..3532	+	70	116493577	-	LSEI_0003	-	S4-like RNA binding protein
4	 46.33	0	3529..4644	+	371	116493578	-	LSEI_0004	-	recombinational DNA repair ATPase (RecF pathway)
5	 49.44	0	4897..6858	+	653	116493579	-	LSEI_0005	-	DNA gyrase, B subunit
6	 48.63	0	6920..9541	+	873	116493580	-	LSEI_0006	-	DNA gyrase, A subunit
7	 45.39	0	9646..10350	-	234	116493581	-	LSEI_0007	-	deoxyribose-phosphate aldolase
8	 50.46	+1	10533..10964	+	143	116493582	-	LSEI_0008	-	single-stranded DNA-binding protein
9	 40.40	-1	11092..11388	+	98	116493583	-	LSEI_0009	-	ribosomal protein S6
10	 51.26	+1	11419..12015	+	198	116493584	-	LSEI_0010	-	single-stranded DNA-binding protein
11	 49.37	0	12102..12338	+	78	116493585	-	LSEI_0011	-	ribosomal protein S18
12	 49.56	0	12780..15269	+	829	116493586	-	LSEI_0012	-	cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2
13	 46.67	0	15296..15490	+	64	116493587	-	LSEI_0013	-	hypothetical protein
14	 47.03	0	15908..16126	+	72	116493588	-	LSEI_0014	-	hypothetical protein
15	 32.82	-2	16104..16298	+	64	116493589	-	LSEI_0015	-	hypothetical protein
16	 46.76	0	16311..16526	+	71	116493590	-	LSEI_0016	-	hypothetical protein
17	 39.73	-1	16694..17287	-	197	116493591	-	LSEI_0017	-	integral membrane protein
18	 47.27	0	18330..18989	+	219	116493592	-	LSEI_0018	-	IS30 family transposase
19	 52.81	+1	19347..19649	-	100	116493593	-	LSEI_0019	-	hypothetical protein
20	 48.95	0	20173..21363	-	396	116493594	-	LSEI_0020	-	surface antigen
21	 50.82	+1	21567..24140	-	857	116493595	-	LSEI_0021	-	peptide ABC transporter permease
22	 47.86	0	24153..24854	-	233	116493596	-	LSEI_0022	-	peptide ABC transporter ATPase
23	 44.75	0	25151..25702	+	183	116493597	-	LSEI_0023	-	transcriptional regulator
24	 46.22	0	25746..26552	+	268	116493598	-	LSEI_0024	-	HAD superfamily hydrolase
25	 46.42	0	26557..26877	+	106	116493599	-	LSEI_0025	-	hypothetical protein
26	 51.81	+1	26934..27707	-	257	116493600	-	LSEI_0026	-	permease
27	 43.50	0	27891..28490	+	199	116493601	-	LSEI_0027	-	integral membrane protein
28	 48.88	0	28614..29507	-	297	116493602	-	LSEI_0028	-	Mg2+ and Co2+ transporter
29	 47.10	0	29556..30194	-	212	116493603	-	LSEI_0029	-	transcriptional regulator
30	 48.66	0	30423..31799	+	458	116493604	-	LSEI_0030	-	manganese transporter NRAMP
31	 46.67	0	32022..32366	-	114	116493605	-	LSEI_0031	-	hypothetical protein
32	 37.50	-2	32442..32801	-	119	116493606	-	LSEI_0032	-	hypothetical protein
33	 49.27	0	33042..34484	+	480	116493607	-	LSEI_0033	-	dipeptidase
34	 49.13	0	34679..35311	+	210	116493608	-	LSEI_0034	-	hypothetical protein
35	 44.77	0	35484..36095	-	203	116493609	-	LSEI_0035	-	hypothetical protein
36	 39.03	-2	36149..36745	-	198	116493610	-	LSEI_0036	-	hypothetical protein
37	 47.12	0	37237..37896	+	219	116493611	-	LSEI_0037	-	IS30 family transposase
38	 39.35	-2	38052..38267	-	71	116493612	-	LSEI_0038	-	hypothetical protein
39	 43.53	0	38396..38650	-	84	116493613	-	LSEI_0039	-	hypothetical protein
40	 33.76	-2	38998..39471	+	157	116493614	-	LSEI_0040	-	hypothetical protein
41	 42.85	-1	39716..41092	-	458	116493615	-	LSEI_0041	-	hypothetical protein
42	 43.33	0	41089..41628	-	179	116493616	-	LSEI_0042	-	hypothetical protein
43	 47.12	0	41789..42448	-	219	116493617	-	LSEI_0043	-	IS30 family transposase
44	 41.84	-1	42780..42920	-	46	116493618	-	LSEI_0044	-	hypothetical protein
45	 55.31	+2	43819..44091	+	90	116493619	-	LSEI_0046	-	hypothetical protein
46	 41.24	-1	44329..44619	-	96	116493620	-	LSEI_0047	-	hypothetical protein
47	 42.34	-1	45426..45536	+	36	116493621	-	LSEI_0048	-	hypothetical protein
48	 42.47	-1	45533..46408	-	291	116493622	-	LSEI_0049	-	metal-dependent membrane protease
49	 47.12	0	47077..47736	+	219	116493623	-	LSEI_0050	-	IS30 family transposase
50	 51.61	+1	47808..48458	-	216	116493624	-	LSEI_0051	-	2-keto-3-deoxy-6-phosphogluconate aldolase
51	 40.69	-1	48857..49549	+	230	116493625	-	LSEI_0052	-	transcriptional regulator
52	 46.72	0	49799..50179	+	126	116493626	-	LSEI_0053	-	hypothetical protein
53	 46.11	0	50244..50564	+	106	116493627	-	LSEI_0054	-	hypothetical protein
54	 40.97	-1	50753..51040	-	95	116493628	-	LSEI_0055	-	hypothetical protein
55	 40.49	-1	51721..53313	+	530	116493629	-	LSEI_0057	-	ABC-type multidrug transport system, ATPase and permease component
56	 50.51	+1	53651..55024	-	457	116493630	-	LSEI_0058	-	major facilitator superfamily permease
57	 41.05	-1	55202..55525	-	107	116493631	-	LSEI_0059	-	hypothetical protein
58	 49.67	0	55706..59017	-	1103	116493632	-	LSEI_0060	-	hypothetical protein
59	 46.93	0	59014..59616	-	200	116493633	-	LSEI_0061	-	transcriptional regulator
60	 55.56	+2	59867..60127	-	86	116493634	-	LSEI_0062	-	hypothetical protein
61	 52.34	+1	60341..61003	-	220	116493635	-	LSEI_0063	-	glycine betaine/carnitine/choline ABC transporter, ATP-binding protein
62	 47.96	0	61003..61932	-	309	116493636	-	LSEI_0064	-	periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
63	 53.17	+1	61944..62573	-	209	116493637	-	LSEI_0065	-	glycine betaine/carnitine/choline ABC transporter, permease protein
64	 48.17	0	62576..63829	-	417	116493638	-	LSEI_0066	-	ABC-type proline/glycine betaine transport system, ATPase component
65	 38.84	-2	64462..65115	-	217	116493639	-	LSEI_0067	-	metal-dependent membrane protease
66	 41.44	-1	65181..65402	-	73	116493640	-	LSEI_0068	-	hypothetical protein
67	 36.56	-2	65526..65711	-	61	116493641	-	LSEI_0069	-	hypothetical protein
68	 52.45	+1	65748..67604	+	618	116493642	-	LSEI_0070	-	cation transport ATPase
69	 44.30	0	67624..67851	+	75	116493643	-	LSEI_0071	-	copper chaperone
70	 50.60	+1	67999..68583	+	194	116493644	-	LSEI_0072	-	DNA-binding ferritin-like protein (oxidative damage protectant)
71	 51.21	+1	68632..69291	+	219	116493645	-	LSEI_0073	-	Crp-like transcriptional regulator
72	 47.04	0	69905..70699	-	264	116493646	trpA	LSEI_0074	-	tryptophan synthase subunit alpha
73	 47.50	0	70692..71912	-	406	116493647	-	LSEI_0075	-	tryptophan synthase subunit beta
74	 47.17	0	71896..72495	-	199	116493648	-	LSEI_0076	-	phosphoribosylanthranilate isomerase
75	 46.87	0	72523..73305	-	260	116493649	-	LSEI_0077	-	indole-3-glycerol phosphate synthase
76	 50.19	0	73302..74327	-	341	116493650	-	LSEI_0078	-	anthranilate phosphoribosyltransferase
77	 45.35	0	75083..76222	+	379	116493651	-	LSEI_0079	-	hypothetical protein
78	 50.30	+1	76354..78180	-	608	116493652	-	LSEI_0080	-	major facilitator superfamily permease
79	 48.53	0	78339..78917	+	192	116493653	-	LSEI_0081	-	transcriptional regulator
80	 38.93	-2	79040..79414	+	124	116493654	-	LSEI_0082	-	hypothetical protein
81	 41.08	-1	79398..80120	-	240	116493655	-	LSEI_0083	-	hypothetical protein
82	 40.98	-1	80339..80848	+	169	116493656	-	LSEI_0084	-	hypothetical protein
83	 38.97	-2	80916..81110	+	64	116493657	-	LSEI_0085	-	hypothetical protein
84	 37.48	-2	81135..81641	+	168	116493658	-	LSEI_0086	-	hypothetical protein
85	 41.03	-1	82206..82322	+	38	116493659	-	LSEI_0087	-	hypothetical protein
86	 44.16	0	82677..83027	+	116	116493660	-	LSEI_0088	-	hypothetical protein
87	 36.04	-2	83488..84300	+	270	116493661	-	LSEI_0089	-	hypothetical protein
88	 35.75	-2	84297..84833	+	178	116493662	-	LSEI_0090	-	hypothetical protein
89	 34.92	-2	84826..85455	+	209	116493663	-	LSEI_0091	-	ABC-type multidrug transport system, ATPase component
90	 52.41	+1	85485..86501	-	338	116493664	-	LSEI_0092	-	IS30 family transposase
91	 33.15	-2	86586..87134	+	182	116493665	-	LSEI_0093	-	hypothetical protein
92	 54.43	+2	87321..88088	-	255	116493666	-	LSEI_0094	-	dihydrodipicolinate reductase
93	 52.87	+1	88085..88990	-	301	116493667	-	LSEI_0095	-	dihydrodipicolinate synthase/N-acetylneuraminate lyase
94	 51.04	+1	89134..90285	-	383	116493668	-	LSEI_0096	-	metal-dependent amidase/aminoacylase/carboxypeptidase
95	 51.35	+1	90293..90997	-	234	116493669	-	LSEI_0097	-	tetrahydrodipicolinate N-succinyltransferase
96	 52.34	+1	91008..92354	-	448	116493670	-	LSEI_0098	-	diaminopimelate decarboxylase
97	 48.70	0	93067..94446	+	459	116493671	-	LSEI_0099	-	aspartate kinase
98	 50.40	+1	94448..95455	+	335	116493672	dapF	LSEI_0100	-	diaminopimelate epimerase
99	 48.82	0	95459..96517	+	352	116493673	-	LSEI_0101	-	aspartate-semialdehyde dehydrogenase
100	 40.28	-1	96510..96653	-	47	116493674	-	LSEI_0102	-	hypothetical protein
46.68	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.