IslandPath Analysis: Bacteroides thetaiotaomicron VPI-5482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.33   STD DEV: 5.15
Bacteroides thetaiotaomicron VPI-5482, complete genome - 1..6260361
4778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.23	0	93..710	+	205	29345411	-	BT_0001	-	hypothetical protein
2	 33.94	-1	783..1778	+	331	29345412	-	BT_0002	-	hypothetical protein
3	 49.03	+1	1872..2648	+	258	29345413	-	BT_0003	-	hypothetical protein
4	 41.26	0	2783..3451	+	222	29345414	-	BT_0004	-	hypothetical protein
5	 39.85	0	3460..3996	+	178	29345415	-	BT_0005	-	30S ribosomal protein S17
6	 37.81	-1	4088..4534	+	148	29345416	-	BT_0006	-	hypothetical protein
7	 36.64	-1	4457..4849	-	130	29345417	-	BT_0007	-	hypothetical protein
8	 35.90	-1	4958..5503	+	181	29345418	-	BT_0008	-	hypothetical protein
9	 50.99	+1	5632..6741	+	369	29345419	-	BT_0009	-	phosphate-binding periplasmic protein precursor, putative ABC transporter
10	 48.60	+1	6796..7869	+	357	29345420	-	BT_0010	-	hypothetical protein
11	 48.76	+1	8075..8923	+	282	29345421	-	BT_0011	-	hypothetical protein
12	 51.33	+1	8983..10149	+	388	29345422	-	BT_0012	-	hypothetical protein
13	 54.88	+2	10181..10723	+	180	29345423	-	BT_0013	-	hypothetical protein
14	 54.33	+2	10893..13316	+	807	29345424	-	BT_0014	-	two-component system histidine kinase with response regulator receiver domain
15	 56.27	+2	13288..14586	+	432	29345425	-	BT_0015	-	rteB, two-component system response regulator
16	 52.58	+1	14774..15412	+	212	29345426	-	BT_0016	-	hypothetical protein
17	 53.69	+2	15525..16472	+	315	29345427	-	BT_0017	-	hypothetical protein
18	 53.28	+1	16655..17371	+	238	29345428	-	BT_0018	-	hypothetical protein
19	 45.79	0	17383..17703	+	106	29345429	-	BT_0019	-	hypothetical protein
20	 49.89	+1	17710..18168	+	152	29345430	-	BT_0020	-	hypothetical protein
21	 38.57	0	18251..18919	-	222	29345431	-	BT_0021	-	hypothetical protein
22	 34.36	-1	19044..19334	+	96	29345432	-	BT_0022	-	hypothetical protein
23	 37.98	-1	19601..19966	-	121	29345433	-	BT_0023	-	transposase
24	 43.39	0	19976..20512	-	178	29345434	-	BT_0024	-	transposase
25	 44.20	0	20537..20674	-	45	29345435	-	BT_0025	-	putative transposase
26	 46.81	0	20936..21358	-	140	29345436	-	BT_0026	-	putative transposase
27	 39.85	0	21544..22080	-	178	29345437	-	BT_0027	-	putative transposase
28	 40.14	0	22552..22830	+	92	29345438	-	BT_0028	-	alkaline phosphatase
29	 41.73	0	22906..26169	+	1087	29345439	-	BT_0029	-	hypothetical protein
30	 45.41	0	26182..28011	+	609	29345440	-	BT_0030	-	hypothetical protein
31	 43.19	0	28131..29195	+	354	29345441	-	BT_0031	-	hypothetical protein
32	 38.89	0	29209..29406	+	65	29345442	-	BT_0032	-	hypothetical protein
33	 33.33	-1	29680..29970	+	96	29345443	-	BT_0033	-	hypothetical protein
34	 44.22	0	30281..31492	+	403	29345444	-	BT_0034	-	hypothetical protein
35	 28.92	-2	31935..32138	-	67	29345445	-	BT_0035	-	hypothetical protein
36	 52.56	+1	32315..33526	+	403	29345446	-	BT_0036	-	integrase
37	 42.80	0	34087..35142	+	351	29345447	-	BT_0037	-	putative transcriptional regulatory protein
38	 31.96	-2	35266..35703	+	145	29345448	-	BT_0038	-	hypothetical protein
39	 45.45	0	35989..36417	+	142	29345449	-	BT_0039	-	hypothetical protein
40	 47.28	0	36478..38019	+	513	29345450	-	BT_0040	-	hypothetical protein
41	 47.38	0	38016..39218	+	400	29345451	-	BT_0041	-	F420H2:quinone oxidoreductase
42	 38.24	0	39215..40375	+	386	29345452	-	BT_0042	-	hypothetical protein
43	 29.94	-2	40406..40582	+	58	29345453	-	BT_0043	-	putative glycosyltransferase
44	 36.83	-1	40593..41537	+	314	29345454	-	BT_0044	-	putative glycosyltransferase
45	 33.76	-1	41534..42700	+	388	29345455	-	BT_0045	-	putative polysaccharide biosynthesis protein
46	 44.69	0	42724..43656	+	310	29345456	-	BT_0046	-	putative glycosyltransferase
47	 38.64	0	43671..44066	+	131	29345457	-	BT_0047	-	putative glycosyltransferase
48	 36.06	-1	44162..44638	+	158	29345458	-	BT_0048	-	hypothetical protein
49	 42.31	0	44647..45582	+	311	29345459	-	BT_0049	-	putative glycosyltransferase
50	 44.14	0	45594..46565	+	323	29345460	-	BT_0050	-	putative glycosyltransferase
51	 44.14	0	46565..47545	+	326	29345461	-	BT_0051	-	putative glycosyltransferase
52	 40.30	0	47716..48834	+	372	29345462	-	BT_0052	-	hypothetical protein
53	 46.67	0	48834..49958	+	374	29345463	-	BT_0053	-	glycosyltransferase
54	 45.28	0	50011..51132	+	373	29345464	-	BT_0054	-	putative glycosyltransferase
55	 44.09	0	51140..52255	+	371	29345465	-	BT_0055	-	putative glycosyltransferase
56	 42.52	0	52276..53298	+	340	29345466	-	BT_0056	-	putative glycosyltransferase
57	 59.03	+2	53288..53575	+	95	29345467	-	BT_0057	-	hypothetical protein
58	 62.86	+2	53647..54777	+	376	29345468	-	BT_0058	-	hypothetical protein
59	 63.48	+2	54774..55715	+	313	29345469	-	BT_0059	-	hypothetical protein
60	 60.18	+2	55754..56539	+	261	29345470	-	BT_0060	-	putative polysaccharide export protein
61	 61.07	+2	56555..58894	+	779	29345471	-	BT_0061	-	putative tyrosine-protein kinase ptk
62	 46.95	0	58891..59103	+	70	29345472	-	BT_0062	-	hypothetical protein
63	 43.28	0	59156..59356	+	66	29345473	-	BT_0063	-	hypothetical protein
64	 50.57	+1	59377..61551	+	724	29345474	-	BT_0064	-	hypothetical protein
65	 56.11	+2	61621..64158	+	845	29345475	-	BT_0065	-	alpha-galactosidase precursor
66	 55.53	+2	64273..65475	+	400	29345476	-	BT_0066	-	major outer membrane protein OmpA
67	 49.21	+1	65813..66064	+	83	29345477	-	BT_0067	-	hypothetical protein
68	 50.21	+1	66092..66571	+	159	29345478	-	BT_0068	-	hypothetical protein
69	 42.87	0	66856..67662	-	268	29345479	-	BT_0069	-	hypothetical protein
70	 43.43	0	67710..68333	-	207	29345480	-	BT_0070	-	hypothetical protein
71	 51.41	+1	68637..69134	-	165	29345481	-	BT_0071	-	hypothetical protein
72	 60.71	+2	69352..69603	-	83	29345482	-	BT_0072	-	putative ABC transporter, ATP-binding protein
73	 60.24	+2	69588..71018	-	476	29345483	-	BT_0073	-	putative ABC transporter, ATP-binding protein
74	 55.49	+2	71009..71500	-	163	29345484	-	BT_0074	-	hypothetical protein
75	 34.02	-1	72433..72723	+	96	29345485	-	BT_0075	-	hypothetical protein
76	 37.71	-1	73184..74416	+	410	29345486	-	BT_0076	-	transposase
77	 43.79	0	74493..74999	+	168	29345487	-	BT_0077	-	hypothetical protein
78	 40.40	0	75258..75710	+	150	29345488	-	BT_0078	-	putative DNA repair protein
79	 43.45	0	76009..76542	+	177	29345489	-	BT_0079	-	putative anti-restriction protein
80	 38.97	0	76586..76798	+	70	29345490	-	BT_0080	-	hypothetical protein
81	 31.79	-2	76823..77017	+	64	29345491	-	BT_0081	-	hypothetical protein
82	 29.53	-2	77115..78035	-	306	29345492	-	BT_0082	-	hypothetical protein
83	 31.14	-2	78109..78975	-	288	29345493	-	BT_0083	-	hypothetical protein
84	 47.30	0	79079..79522	-	147	29345494	-	BT_0084	-	protein found in conjugate transposon
85	 48.36	0	79544..80122	-	192	29345495	-	BT_0085	-	protein found in conjugate transposon
86	 45.54	0	80125..81033	-	302	29345496	-	BT_0086	-	protein found in conjugate transposon
87	 50.87	+1	81067..82452	-	461	29345497	-	BT_0087	-	protein found in conjugate transposon
88	 46.41	0	82427..82732	-	101	29345498	-	BT_0088	-	protein found in conjugate transposon
89	 45.83	0	82736..83359	-	207	29345499	-	BT_0089	-	protein found in conjugate transposon
90	 47.95	0	83372..84397	-	341	29345500	-	BT_0090	-	protein found in conjugate transposon
91	 44.13	0	84416..85045	-	209	29345501	-	BT_0091	-	protein found in conjugate transposon
92	 47.62	0	85050..85406	-	118	29345502	-	BT_0092	-	protein found in conjugate transposon
93	 43.79	0	85435..87939	-	834	29345503	-	BT_0093	-	protein found in conjugate transposon
94	 44.65	0	87936..88262	-	108	29345504	-	BT_0094	-	protein found in conjugate transposon
95	 48.48	+1	88274..88570	-	98	29345505	-	BT_0095	-	protein found in conjugate transposon
96	 48.60	+1	88735..89415	-	226	29345506	-	BT_0096	-	hypothetical protein
97	 46.58	0	89417..89854	-	145	29345507	-	BT_0097	-	protein found in conjugate transposon
98	 48.03	0	89859..90620	-	253	29345508	-	BT_0098	-	protein found in conjugate transposon
99	 49.65	+1	91004..91285	+	93	29345509	-	BT_0099	-	hypothetical protein
100	 47.26	0	91305..91742	+	145	29345510	-	BT_0100	-	hypothetical protein
43.33	MEAN

5.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.