IslandPath Analysis: Burkholderia xenovorans LB400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.84   STD DEV: 4.19
Burkholderia xenovorans LB400 chromosome 3, complete genome - 1..1471779
1312 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.53	0	477..1370	+	297	91780072	-	Bxe_C0001	-	hypothetical protein
2	 65.07	0	1472..2221	+	249	91780073	-	Bxe_C0002	-	hypothetical protein
3	 58.87	0	2190..2561	-	123	91780074	-	Bxe_C0003	-	hypothetical protein
4	 63.82	0	2708..6364	+	1218	91780075	-	Bxe_C0004	-	5-oxoprolinase (ATP-hydrolyzing)
5	 63.74	0	6440..7225	+	261	91780076	-	Bxe_C0005	-	hypothetical protein
6	 61.65	0	7222..8178	+	318	91780077	-	Bxe_C0006	-	hypothetical protein
7	 60.21	0	8232..9206	+	324	91780078	-	Bxe_C0007	-	LysR family transcriptional regulator
8	 59.74	0	9459..10556	+	365	91780079	-	Bxe_C0008	-	OmpC family outer membrane porin
9	 62.70	0	10717..12252	+	511	91780080	-	Bxe_C0009	-	methyl-accepting chemotaxis sensory transducer
10	 63.02	0	12370..13275	-	301	91780081	-	Bxe_C0010	-	LysR family transcriptional regulator
11	 68.09	+1	13396..14238	+	280	91780082	-	Bxe_C0011	-	hypothetical protein
12	 63.39	0	14332..15093	+	253	91780083	-	Bxe_C0012	-	putative short-chain dehydrogenase
13	 65.38	0	15595..17154	+	519	91780084	-	Bxe_C0013	-	putative monooxygenase
14	 64.54	0	17726..20269	+	847	91780085	-	Bxe_C0015	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
15	 63.33	0	20514..21803	+	429	91780086	-	Bxe_C0016	-	hypothetical protein
16	 62.28	0	21847..22848	-	333	91780087	-	Bxe_C0017	-	response regulator receiver domain-containing protein
17	 59.59	0	22851..24080	-	409	91780088	-	Bxe_C0018	-	seriplasmic sensor signal transduction histidine kinase
18	 61.68	0	24930..26252	+	440	91780089	-	Bxe_C0019	-	putative transposase
19	 63.50	0	26316..27263	+	315	91780090	-	Bxe_C0020	-	hypothetical protein
20	 57.36	-1	27563..28561	-	332	91780091	-	Bxe_C0021	-	putative integrase
21	 67.02	+1	28889..29749	+	286	91780092	-	Bxe_C0022	-	hypothetical protein
22	 65.35	0	30007..30768	-	253	91780093	-	Bxe_C0023	-	hypothetical protein
23	 71.99	+2	30904..32124	+	406	91780094	-	Bxe_C0024	-	hypothetical protein
24	 62.88	0	32134..32820	+	228	91780095	-	Bxe_C0025	-	hypothetical protein
25	 66.29	+1	33148..33414	+	88	91780096	-	Bxe_C0026	-	hypothetical protein
26	 63.00	0	33416..34015	+	199	91780097	-	Bxe_C0027	-	hypothetical protein
27	 61.69	0	34233..35036	-	267	91780098	-	Bxe_C0028	-	CO metabolism transcriptional regulator RcoM2
28	 65.28	0	35467..36333	+	288	91780099	-	Bxe_C0029	-	carbon monoxide dehydrogenase, medium subunit
29	 60.15	0	36380..36901	+	173	91780100	-	Bxe_C0030	-	carbon monoxide dehydrogenase, small subunit
30	 63.89	0	36918..39329	+	803	91780101	coxL	Bxe_C0031	-	carbon monoxide dehydrogenase, large subunit apoprotein
31	 68.28	+1	39430..40050	+	206	91780102	-	Bxe_C0032	-	putative carbon monoxide dehydrogenase, CoxG subunit
32	 62.30	0	40066..40959	+	297	91780103	-	Bxe_C0033	-	putative ATPase
33	 70.74	+2	40953..42155	+	400	91780104	-	Bxe_C0034	-	putative carbon monoxide dehydrogenase, CoxE subunit
34	 67.82	+1	42166..43206	+	346	91780105	-	Bxe_C0035	-	sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis / sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis
35	 66.08	+1	43203..43880	+	225	91780106	-	Bxe_C0036	-	molybdenum cofactor cytidylyltransferase
36	 63.54	0	43906..44289	-	127	91780107	-	Bxe_C0037	-	hypothetical protein
37	 61.03	0	44434..45498	-	354	91780108	-	Bxe_C0038	-	high-affinity nickel transporter
38	 63.18	0	45639..46097	+	152	91780109	-	Bxe_C0039	-	CopG family transcriptional regulator
39	 64.55	0	46310..46687	+	125	91780110	-	Bxe_C0040	-	hypothetical protein
40	 64.52	0	46777..49242	+	821	91780111	-	Bxe_C0041	-	putative TonB-dependent siderophore receptor
41	 64.32	0	49331..50182	-	283	91780112	-	Bxe_C0042	-	H+-transporting two-sector ATPase, gamma subunit
42	 68.24	+1	50251..51843	-	530	91780113	-	Bxe_C0043	-	ATP synthase F1, alpha subunit
43	 70.28	+2	51824..52570	-	248	91780114	-	Bxe_C0044	-	H+-transporting two-sector ATPase, B/B' subunit
44	 65.86	0	52584..52832	-	82	91780115	-	Bxe_C0045	-	F0F1 ATP synthase subunit C
45	 63.93	0	52829..53596	-	255	91780116	-	Bxe_C0046	-	F0F1 ATP synthase subunit A
46	 64.42	0	53801..54112	-	103	91780117	-	Bxe_C0047	-	putative ATP synthesis-related protein
47	 67.38	+1	54109..54528	-	139	91780118	-	Bxe_C0048	-	F0F1 ATP synthase subunit epsilon
48	 69.50	+1	54525..56006	-	493	91780119	-	Bxe_C0049	-	F0F1 ATP synthase subunit beta
49	 65.76	0	56010..56783	-	257	91780120	-	Bxe_C0050	-	enoyl-(acyl carrier protein) reductase
50	 66.42	+1	56780..57973	-	397	91780121	-	Bxe_C0051	-	acetate kinase
51	 66.74	+1	57970..59376	-	468	91780122	-	Bxe_C0052	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
52	 65.11	0	59386..61182	-	598	91780123	-	Bxe_C0053	-	putative poly-beta-hydroxybutyrate polymerase
53	 59.11	0	61363..61746	-	127	91780124	-	Bxe_C0054	-	hypothetical protein
54	 64.52	0	61778..63175	+	465	91780125	-	Bxe_C0055	-	GntR family transcriptional regulator
55	 66.67	+1	63364..64398	+	344	91780126	-	Bxe_C0056	-	threonine dehydratase
56	 68.46	+1	64395..65396	+	333	91780127	-	Bxe_C0057	-	ornithine cyclodeaminase
57	 67.05	+1	65505..66554	+	349	91780128	-	Bxe_C0058	-	hypothetical protein
58	 62.40	0	66564..67055	+	163	91780129	-	Bxe_C0059	-	AsnC family transcriptional regulator
59	 67.06	+1	67198..68721	+	507	91780130	-	Bxe_C0060	-	succinate semialdehyde dehydrogenase
60	 62.80	0	68762..70159	+	465	91780131	-	Bxe_C0061	-	hypothetical protein
61	 66.39	+1	70323..71417	-	364	91780132	-	Bxe_C0062	-	putative Zinc-binding dehydrogenase
62	 63.06	0	71489..72709	-	406	91780133	-	Bxe_C0063	-	putative peptidase
63	 61.83	0	73245..74030	+	261	91780134	-	Bxe_C0064	-	polar amino acid ABC transporter ATPase
64	 65.01	0	74087..74929	+	280	91780135	-	Bxe_C0065	-	polar amino acid ABC transporter periplasmic ligand-binding protein
65	 63.18	0	75004..75663	+	219	91780136	-	Bxe_C0066	-	polar amino acid ABC transporter inner membrane protein
66	 61.67	0	75668..76327	+	219	91780137	-	Bxe_C0067	-	polar amino acid ABC transporter inner membrane protein
67	 66.54	+1	76331..77110	+	259	91780138	-	Bxe_C0068	-	putative isomerase
68	 59.94	0	77191..78528	+	445	91780139	-	Bxe_C0069	-	major facilitator superfamily metabolite/H(+) symporter
69	 60.53	0	78946..79629	+	227	91780140	-	Bxe_C0070	-	hypothetical protein
70	 63.39	0	80250..81956	-	568	91780141	-	Bxe_C0072	-	GAF sensor hybrid histidine kinase
71	 62.30	0	82059..82310	-	83	91780142	-	Bxe_C0073	-	hypothetical protein
72	 61.37	0	82361..82870	+	169	91780143	-	Bxe_C0074	-	hypothetical protein
73	 61.32	0	82954..84057	+	367	91780144	-	Bxe_C0075	-	hypothetical protein
74	 60.51	0	84153..85403	+	416	91780145	-	Bxe_C0076	-	putative phosphatidylserine decarboxylase
75	 61.39	0	85507..86643	-	378	91780146	-	Bxe_C0077	-	putative glutathione-independent formaldehyde dehydrogenase
76	 65.30	0	86964..87917	+	317	91780147	-	Bxe_C0078	-	putative Zinc-binding dehydrogenase
77	 66.96	+1	88074..89102	+	342	91780148	-	Bxe_C0079	-	putative cytochrome c oxidase subunit II
78	 64.22	0	89132..91174	+	680	91780149	-	Bxe_C0080	-	putative cytochrome c oxidase subunit I
79	 61.16	0	91176..91829	+	217	91780150	-	Bxe_C0081	-	putative cytochrome c oxidase subunit III
80	 67.84	+1	91814..92239	+	141	91780151	-	Bxe_C0082	-	hypothetical protein
81	 67.72	+1	92242..93663	+	473	91780152	-	Bxe_C0083	-	putative alcohol dehydrogenase cytochrome c subunit
82	 63.44	0	93861..96155	-	764	91780153	-	Bxe_C0084	-	oxidoreductase alpha (molybdopterin) subunit
83	 67.14	+1	96282..97133	-	283	91780154	-	Bxe_C0085	-	taurine ABC transporter inner membrane protein
84	 64.91	0	97130..97924	-	264	91780155	-	Bxe_C0086	-	ABC taurine transporter, ATPase subunit
85	 64.71	0	97921..98943	-	340	91780156	-	Bxe_C0087	-	ABC taurine transporter, periplasmic ligand binding protein
86	 62.33	0	99417..100823	+	468	91780157	-	Bxe_C0088	-	putative selenium binding protein
87	 65.04	0	100820..101497	+	225	91780158	-	Bxe_C0089	-	hypothetical protein
88	 65.74	0	101700..102887	-	395	91780159	-	Bxe_C0090	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
89	 65.80	0	103004..103579	-	191	91780160	-	Bxe_C0091	-	alkylhydroperoxidase-related
90	 69.47	+1	103576..104145	-	189	91780161	-	Bxe_C0092	-	hypothetical protein
91	 66.87	+1	104198..105694	-	498	91780162	-	Bxe_C0093	-	putative oxidoreductase
92	 67.28	+1	105691..106671	-	326	91780163	-	Bxe_C0094	-	LysR family transcriptional regulator
93	 64.17	0	107022..108221	+	399	91780164	-	Bxe_C0095	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
94	 66.28	+1	108268..110091	+	607	91780165	-	Bxe_C0096	-	branched chain amino acid ABC transporter inner membrane protein
95	 67.22	+1	110102..111010	+	302	91780166	-	Bxe_C0097	-	branched chain amino acid ABC transporter ATPase
96	 63.88	0	111007..111795	+	262	91780167	-	Bxe_C0098	-	branched chain amino acid ABC transporter ATPase
97	 67.27	+1	111916..112749	-	277	91780168	-	Bxe_C0099	-	nitrate/nitrite/cyanate ABC transporter inner membrane protein
98	 63.73	0	112742..113932	-	396	91780169	-	Bxe_C0100	-	nitrate/nitrite/cyanate ABC transporter periplasmic ligand-binding protein
99	 68.05	+1	113948..114742	-	264	91780170	-	Bxe_C0101	-	nitrate/nitrite/cyanate ABC transporter ATPase
100	 69.02	+1	114739..115842	-	367	91780171	-	Bxe_C0102	-	putative acyl-CoA dehydrogenase
61.84	MEAN

4.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.