IslandPath Analysis: Francisella tularensis subsp. tularensis WY96-3418



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.58   STD DEV: 3.43
Francisella tularensis subsp. tularensis WY96-3418, complete genome - 1..1898476
1634 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.17	0	46..1521	+	491	134301170	dnaA	FTW_0001	-	chromosomal replication initiator protein DnaA
2	 27.81	-1	1558..2661	+	367	134301171	dnaN	FTW_0002	-	DNA polymerase III, beta subunit
3	 31.10	0	3108..3988	-	293	134301172	-	FTW_0004	-	transposase ISFtu1
4	 32.06	0	4789..5181	+	130	134301173	-	FTW_0007	-	lipoprotein
5	 32.85	0	5202..5612	+	136	134301174	-	FTW_0008	-	hypothetical protein
6	 29.57	0	5615..6013	+	132	134301175	-	FTW_0009	-	hypothetical protein
7	 35.94	0	6084..7502	+	472	134301176	clcA	FTW_0010	-	chloride channel protein
8	 31.02	0	7519..8943	+	474	134301177	-	FTW_0011	-	metallocarboxypeptidase
9	 39.55	+2	9030..10220	+	396	134301178	trpB	FTW_0012	-	tryptophan synthase subunit beta
10	 35.43	0	10220..11029	+	269	134301179	trpA	FTW_0013	-	tryptophan synthase subunit alpha
11	 29.94	0	11084..11437	-	117	134301180	-	FTW_0014	-	hypothetical protein
12	 35.85	0	12455..15034	+	859	134301181	clpB	FTW_0017	-	AAA ATPase family protein
13	 35.66	0	17532..18692	+	386	134301182	purT	FTW_0020	-	phosphoribosylglycinamide formyltransferase 2
14	 33.18	0	18694..19350	-	218	134301183	-	FTW_0021	-	O-methyltransferase family protein
15	 31.31	0	19428..20069	-	213	134301184	-	FTW_0022	-	hypothetical protein
16	 37.04	+1	20301..20624	+	107	134301185	-	FTW_0023	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
17	 33.73	0	20787..21539	+	250	134301186	-	FTW_0024	-	acetyltransferase protein
18	 34.82	0	21553..22293	+	246	134301187	-	FTW_0025	-	acetyltransferase protein
19	 29.86	0	22299..23018	-	239	134301188	-	FTW_0026	-	hypothetical protein
20	 32.90	0	23083..24234	-	383	134301189	nhaA	FTW_0027	-	Na+/H+ antiporter NhaA
21	 33.11	0	24328..25224	+	298	134301190	-	FTW_0028	-	Rieske (2Fe-2S) domain-containing protein
22	 32.75	0	25290..25799	+	169	134301191	-	FTW_0029	-	putative B-type cytochrome subunit
23	 31.10	0	27236..28116	+	293	134301192	-	FTW_0033	-	transposase ISFtu1
24	 30.16	0	30375..33962	+	1195	134301193	pdpD1	FTW_0037	-	pathogenicity determinant protein D, pdpD
25	 32.25	0	34043..34597	+	184	134301194	iglA1	FTW_0038	-	intracellular growth locus, igl A
26	 31.16	0	34611..36131	+	506	134301195	iglB1	FTW_0039	-	intracellular growth locus B, IglB
27	 34.43	0	36142..36777	+	211	134301196	iglC1	FTW_0040	-	intracellular growth locus iglC
28	 29.32	0	36798..37994	+	398	134301197	iglD1	FTW_0041	-	intracellular growth locus iglD
29	 24.83	-2	38001..38576	-	191	134301198	-	FTW_0042	-	hypothetical protein
30	 26.41	-1	38594..42580	-	1328	134301199	pdpC1	FTW_0043	-	pathogenicity determinant protein pdpC
31	 23.71	-2	42620..43336	-	238	134301200	-	FTW_0044	-	hypothetical protein
32	 25.95	-1	43359..44510	-	383	134301201	-	FTW_0045	-	hypothetical protein
33	 28.04	-1	44532..45155	-	207	134301202	-	FTW_0046	-	hypothetical protein
34	 26.28	-1	45168..46598	-	476	134301203	-	FTW_0047	-	hypothetical protein
35	 33.33	0	46611..47132	-	173	134301204	-	FTW_0048	-	hypothetical protein
36	 24.32	-2	47133..48863	-	576	134301205	-	FTW_0049	-	hypothetical protein
37	 30.30	0	48868..49362	-	164	134301206	-	FTW_0050	-	hypothetical protein
38	 23.54	-2	49375..49752	-	125	134301207	-	FTW_0051	-	lipoprotein
39	 26.26	-1	49742..53023	-	1093	134301208	pdpB1	FTW_0052	-	pathogenicity deteminant protein pdpB1
40	 27.04	-1	53028..55490	-	820	134301209	pdpA1	FTW_0053	-	pathogenicity deteminant protein pdpA1
41	 30.99	0	61855..62735	+	293	134301210	-	FTW_0056	-	transposase ISFtu1
42	 33.33	0	63486..65207	+	573	134301211	kdpA	FTW_0059	-	potassium-transporting ATPase subunit A
43	 36.13	+1	65217..67256	+	679	134301212	kdpB	FTW_0060	-	K+-transporting ATPase, B subunit
44	 33.69	0	67273..67827	+	184	134301213	kdpC	FTW_0061	-	potassium-transporting ATPase C chain
45	 33.11	0	67931..70612	+	893	134301214	kdpD	FTW_0062	-	two component sensor protein KdpD
46	 41.46	+2	71556..72035	+	159	134301215	-	FTW_0064	-	hypothetical protein
47	 32.00	0	72482..73678	+	398	134301216	-	FTW_0065	-	tryptophan/tyrosine permease family protein
48	 37.21	+1	73754..74758	+	334	134301217	obgE	FTW_0066	-	GTPase ObgE
49	 33.07	0	74765..76639	+	624	134301218	-	FTW_0067	-	amino acid transporter
50	 35.15	0	78291..79718	-	475	134301219	nhaD	FTW_0070	-	Na+/H+ antiporter
51	 36.21	+1	79893..81074	+	393	134301220	-	FTW_0071	-	major facilitator superfamily multidrug resistance protein
52	 36.94	+1	81115..82446	-	443	134301221	-	FTW_0072	-	peptidase, U32 family protein
53	 33.66	0	82766..83386	+	206	134301222	-	FTW_0073	-	putative protein-L-isoaspartate O-methyltransferase
54	 36.01	+1	83395..84924	+	509	134301223	-	FTW_0074	-	TolC family outer membrane efflux protein
55	 31.62	0	84933..85574	+	213	134301224	-	FTW_0075	-	4'-phosphopantetheinyl transferase family protein
56	 37.56	+1	85585..86931	+	448	134301225	-	FTW_0076	-	glutamate decarboxylase
57	 36.89	+1	87025..88515	+	496	134301226	purF	FTW_0077	-	amidophosphoribosyltransferase
58	 39.12	+1	88515..92387	+	1290	134301227	purL	FTW_0078	-	phosphoribosylformylglycinamidine synthase
59	 30.99	0	92947..93827	+	293	134301228	-	FTW_0081	-	transposase ISFtu1
60	 33.69	0	95466..96305	+	279	134301229	-	FTW_0086	-	aldose 1-epimerase family protein
61	 30.43	0	96279..97106	-	275	134301230	-	FTW_0087	-	hypothetical protein
62	 33.33	0	97349..97747	-	132	134301231	-	FTW_0088	-	hypothetical protein
63	 35.49	0	98075..99373	+	432	134301232	purB	FTW_0089	-	adenylosuccinate lyase
64	 30.92	0	99407..99985	+	192	134301233	-	FTW_0090	-	hypothetical protein
65	 29.25	0	100072..101613	+	513	134301234	-	FTW_0091	-	antibiotic ABC transporter
66	 36.79	+1	101624..102694	+	356	134301235	-	FTW_0092	-	membrane fusion protein
67	 31.91	0	102777..103058	+	93	134301236	gatC	FTW_0093	-	Glu-tRNAGln amidotransferase C subunit
68	 37.48	+1	103067..104512	+	481	134301237	-	FTW_0094	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
69	 36.92	+1	104515..105936	+	473	134301238	gatB	FTW_0095	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
70	 30.64	0	105951..106358	+	135	134301239	-	FTW_0096	-	hypothetical protein
71	 34.05	0	107913..109442	-	509	134301240	-	FTW_0100	-	hypothetical protein
72	 33.92	0	109528..110718	-	396	134301241	figD	FTW_0101	-	major facilitator transporter
73	 32.78	0	110734..111987	-	417	134301242	figC	FTW_0102	-	diaminopimelate decarboxylase
74	 31.04	0	111980..113242	-	420	134301243	figB	FTW_0103	-	major facilitator transporter
75	 32.50	0	113249..115168	-	639	134301244	figA	FTW_0104	-	IucA/IucC family siderophore biosynthesis protein
76	 32.86	0	115423..115845	-	140	134301245	fur	FTW_0105	-	ferric uptake regulation protein
77	 36.34	+1	116054..116452	+	132	134301246	nuoA	FTW_0106	-	NADH dehydrogenase I, A subunit
78	 43.61	+2	116443..116919	+	158	134301247	nuoB	FTW_0107	-	NADH dehydrogenase subunit B
79	 36.43	+1	116922..117566	+	214	134301248	nuoC	FTW_0108	-	NADH dehydrogenase I subunit C
80	 38.84	+1	117588..118841	+	417	134301249	nuoD	FTW_0109	-	NADH dehydrogenase subunit D
81	 36.20	+1	118851..119339	+	162	134301250	nuoE	FTW_0110	-	NADH dehydrogenase I, E subunit
82	 40.16	+2	119346..120620	+	424	134301251	nuoF	FTW_0111	-	NADH dehydrogenase I subunit F
83	 36.46	+1	120638..123004	+	788	134301252	nuoG	FTW_0112	-	NADH dehydrogenase subunit G
84	 36.50	+1	123006..124016	+	336	134301253	nuoH	FTW_0113	-	NADH dehydrogenase I, H subunit
85	 35.17	0	124030..124518	+	162	134301254	nuoI	FTW_0114	-	NADH dehydrogenase subunit I
86	 34.98	0	124523..125128	+	201	134301255	nuoJ	FTW_0115	-	NADH dehydrogenase I, J subunit
87	 32.08	0	125121..125438	+	105	134301256	nuoK	FTW_0116	-	NADH dehydrogenase I subunit K
88	 34.98	0	125448..127457	+	669	134301257	nuoL	FTW_0117	-	NADH dehydrogenase I, L subunit
89	 36.29	+1	127483..129072	+	529	134301258	nuoM	FTW_0118	-	NADH dehydrogenase I, M subunit
90	 35.47	0	129088..130539	+	483	134301259	nuoN	FTW_0119	-	NADH dehydrogenase I, subunit N
91	 30.77	0	130615..130809	+	64	134301260	-	FTW_0120	-	hypothetical protein
92	 35.75	0	132372..133406	+	344	134301261	hemE	FTW_0123	-	uroporphyrinogen decarboxylase
93	 35.32	0	133632..134084	+	150	134301262	-	FTW_0124	-	hypothetical protein
94	 34.42	0	134102..135571	+	489	134301263	nusA	FTW_0125	-	transcription elongation factor NusA
95	 38.03	+1	135610..138141	+	843	134301264	infB	FTW_0126	-	translation initiation factor IF-2
96	 32.41	0	138144..138575	+	143	134301265	rbfA	FTW_0127	-	ribosome-binding factor A
97	 34.68	0	138583..139848	+	421	134301266	hisS	FTW_0128	-	histidyl-tRNA synthetase
98	 34.03	0	139855..141153	+	432	134301267	-	FTW_0129	-	major facilitator transporter
99	 29.68	0	141156..142223	+	355	134301268	-	FTW_0130	-	AFG1 family ATPase
100	 34.09	0	142216..143145	+	309	134301269	rluC	FTW_0131	-	ribosomal large subunit pseudouridine synthase C
32.58	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.