IslandPath Analysis: Candidatus Amoebophilus asiaticus 5a2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.54   STD DEV: 3.18
Candidatus Amoebophilus asiaticus 5a2, complete genome - 1..1884364
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.17	0	513..1946	+	477	189501471	-	Aasi_0001	-	chromosomal replication initiator protein DnaA
2	 26.95	-2	2481..2621	+	46	189501472	-	Aasi_0002	-	hypothetical protein
3	 34.44	0	2729..3181	+	150	189501473	-	Aasi_0003	-	hypothetical protein
4	 31.50	-1	3506..4213	+	235	189501474	-	Aasi_0004	-	hypothetical protein
5	 39.59	+1	4719..6125	+	468	189501475	-	Aasi_0005	-	RNA methyltransferase, TrmA family
6	 36.20	0	7774..8157	+	127	189501476	-	Aasi_0007	-	hypothetical protein
7	 37.46	0	8655..11222	-	855	189501477	-	Aasi_0008	-	hypothetical protein
8	 36.18	0	11922..12869	-	315	189501478	-	Aasi_0009	-	helix-turn-helix- domain containing protein AraC type
9	 37.79	0	12859..13554	-	231	189501479	-	Aasi_0010	-	tRNA (guanine-N1)-methyltransferase
10	 33.14	0	13770..15353	+	527	189501480	-	Aasi_0011	-	permease YjgP/YjgQ family protein
11	 33.33	0	15554..15829	+	91	189501481	-	Aasi_0012	-	ribosomal protein S15
12	 37.49	0	16013..18154	+	713	189501482	-	Aasi_0013	-	3' exoribonuclease
13	 39.70	+1	18265..19128	+	287	189501483	-	Aasi_0014	-	RNA polymerase sigma factor, sigma-70 family
14	 41.77	+1	19139..20086	+	315	189501484	-	Aasi_0015	-	thioredoxin reductase
15	 39.07	+1	20692..22086	+	464	189501485	-	Aasi_0016	-	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
16	 37.46	0	22095..23234	+	379	189501486	-	Aasi_0017	-	aminotransferase class V
17	 37.13	0	23304..24014	+	236	189501487	-	Aasi_0018	-	Lipoprotein signal peptidase-like protein
18	 37.56	0	24584..25435	-	283	189501488	-	Aasi_0019	-	Appr-1-p processing domain protein
19	 37.06	0	25639..26496	+	285	189501489	-	Aasi_0020	-	modification methylase, HemK family
20	 35.03	0	26619..27500	+	293	189501490	-	Aasi_0021	-	hypothetical protein
21	 35.30	0	27558..28523	+	321	189501491	-	Aasi_0022	-	Ppx/GppA phosphatase
22	 36.76	0	28635..30386	+	583	189501492	-	Aasi_0023	-	proton-translocating NADH-quinone oxidoreductase, chain M
23	 35.40	0	30465..32255	+	596	189501493	-	Aasi_0024	-	excinuclease ABC, C subunit
24	 36.39	0	32750..35173	-	807	189501494	-	Aasi_0025	-	cyclin domain protein F-box protein
25	 37.69	0	35559..36683	+	374	189501495	-	Aasi_0026	-	queuine tRNA-ribosyltransferase
26	 34.08	0	36777..37850	+	357	189501496	-	Aasi_0027	-	permease YjgP/YjgQ family protein
27	 33.44	0	37868..40612	+	914	189501497	-	Aasi_0028	-	hypothetical protein
28	 38.39	0	40678..41922	+	414	189501498	-	Aasi_0029	-	catalytic domain of components of various dehydrogenase complexes
29	 37.59	0	42029..42568	+	179	189501499	-	Aasi_0030	-	20S proteasome A and B subunits
30	 36.88	0	43964..44790	+	275	189501500	-	Aasi_0033	-	hypothetical protein
31	 36.91	0	44884..47175	-	763	189501501	-	Aasi_0034	-	Sel1 domain protein repeat-containing protein
32	 31.37	-1	47185..47337	-	50	189501502	-	Aasi_0035	-	hypothetical protein
33	 38.53	0	47624..48952	-	442	189501503	-	Aasi_0036	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
34	 34.93	0	48996..49622	-	208	189501504	-	Aasi_0037	-	hypothetical protein
35	 36.81	0	49679..51952	-	757	189501505	-	Aasi_0038	-	UvrD/REP helicase
36	 35.06	0	52143..53936	-	597	189501506	-	Aasi_0039	-	hypothetical protein
37	 37.72	0	54870..58199	+	1109	189501507	-	Aasi_0040	-	metal-dependent phosphohydrolase HD sub domain
38	 40.82	+1	58835..58981	+	48	189501508	-	Aasi_0042	-	ribonuclease HII
39	 33.85	0	59117..60853	+	578	189501509	-	Aasi_0043	-	GTP-binding protein HSR1-related
40	 35.20	0	60944..62335	+	463	189501510	-	Aasi_0044	-	hypothetical protein
41	 30.18	-1	62432..63223	+	263	189501511	-	Aasi_0045	-	hypothetical protein
42	 33.84	0	64244..66004	-	586	189501512	-	Aasi_0047	-	ABC transporter related
43	 34.51	0	66037..66798	-	253	189501513	-	Aasi_0048	-	tRNA pseudouridine synthase A
44	 37.77	0	67133..67966	-	277	189501514	-	Aasi_0049	-	translation elongation factor Ts
45	 39.92	+1	68187..69128	-	313	189501515	-	Aasi_0050	-	ribosomal protein S2
46	 35.92	0	69154..69540	-	128	189501516	-	Aasi_0051	-	ribosomal protein S9
47	 37.33	0	69545..69994	-	149	189501517	-	Aasi_0052	-	ribosomal protein L13
48	 37.43	0	70420..71127	-	235	189501518	-	Aasi_0053	-	hypothetical protein
49	 34.10	0	71130..71519	-	129	189501519	-	Aasi_0054	-	Biopolymer transport protein ExbD/TolR
50	 34.65	0	71509..72192	-	227	189501520	-	Aasi_0055	-	MotA/TolQ/ExbB proton channel
51	 35.30	0	72251..73063	-	270	189501521	-	Aasi_0056	-	hypothetical protein
52	 35.70	0	73225..73815	-	196	189501522	-	Aasi_0057	-	methyladenine glycosylase
53	 36.56	0	73929..74735	+	268	189501523	-	Aasi_0058	-	enoyl-(acyl-carrier-protein) reductase (NADH)
54	 26.83	-2	76240..76362	+	40	189501524	-	Aasi_0060	-	hypothetical protein
55	 34.90	0	76613..77632	+	339	189501525	-	Aasi_0061	-	ATP synthase F0, A subunit
56	 39.84	+1	77699..77944	+	81	189501526	-	Aasi_0062	-	ATP synthase F0, C subunit
57	 32.93	0	77973..78467	+	164	189501527	-	Aasi_0063	-	ATP synthase F0, B subunit
58	 31.03	-1	78476..79084	+	202	189501528	-	Aasi_0064	-	ATP synthase F1, delta subunit
59	 40.03	+1	79134..80732	+	532	189501529	-	Aasi_0065	-	ATP synthase F1, alpha subunit
60	 34.82	0	80760..81632	+	290	189501530	-	Aasi_0066	-	ATP synthase F1, gamma subunit
61	 33.27	0	83226..84704	-	492	189501531	-	Aasi_0069	-	ADP/ATP carrier protein
62	 37.69	0	86065..86706	-	213	189501532	-	Aasi_0071	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
63	 36.73	0	86884..87746	-	287	189501533	-	Aasi_0072	-	hypothetical protein
64	 33.69	0	87889..88737	+	282	189501534	-	Aasi_0073	-	protein of unknown function DUF6 transmembrane
65	 33.00	0	88955..90172	-	405	189501535	-	Aasi_0074	-	protein of unknown function DUF214
66	 31.89	-1	90466..90951	+	161	189501536	-	Aasi_0075	-	hypothetical protein
67	 40.92	+1	91051..91485	+	144	189501537	-	Aasi_0076	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
68	 35.91	0	91507..92517	+	336	189501538	-	Aasi_0077	-	Nucleotidyl transferase
69	 35.62	0	92785..93528	+	247	189501539	-	Aasi_0078	-	hypothetical protein
70	 32.94	0	93515..94774	+	419	189501540	-	Aasi_0079	-	Peptidase M23
71	 33.55	0	95178..95645	-	155	189501541	-	Aasi_0080	-	hypothetical protein
72	 29.17	-2	95832..95951	-	39	189501542	-	Aasi_0081	-	hypothetical protein
73	 36.15	0	96654..97516	-	287	189501543	-	Aasi_0082	-	hypothetical protein
74	 35.46	0	97707..98741	-	344	189501544	-	Aasi_0083	-	peptidase U61 LD-carboxypeptidase A
75	 35.16	0	99025..100392	+	455	189501545	-	Aasi_0084	-	peptidase S14 ClpP
76	 34.04	0	101575..101715	+	46	189501546	-	Aasi_0086	-	hypothetical protein
77	 36.72	0	101734..101910	+	58	189501547	-	Aasi_0087	-	hypothetical protein
78	 38.95	+1	101889..103580	-	563	189501548	-	Aasi_0088	-	Leucine-rich repeat, ribonuclease inhibitor subtype
79	 37.44	0	103697..104524	+	275	189501549	-	Aasi_0089	-	transposase IS4 family protein
80	 38.33	0	104579..104758	-	59	189501550	-	Aasi_0090	-	hypothetical protein
81	 32.48	0	105017..105718	-	233	189501551	-	Aasi_0091	-	CDP-diacylglycerol/serine O-phosphatidyltransferase
82	 35.21	0	106022..109009	+	995	189501552	-	Aasi_0092	-	protein-export membrane protein SecD
83	 32.96	0	109254..110321	+	355	189501553	-	Aasi_0093	-	Ankyrin
84	 36.67	0	110824..111273	+	149	189501554	-	Aasi_0094	-	hypothetical protein
85	 34.66	0	111403..112005	+	200	189501555	-	Aasi_0095	-	hypothetical protein
86	 42.47	+2	112437..112994	+	185	189501556	-	Aasi_0096	-	Resolvase domain
87	 32.29	-1	113051..113815	+	254	189501557	-	Aasi_0097	-	protein of unknown function DUF1624
88	 35.95	0	114440..115393	-	317	189501558	-	Aasi_0098	-	hypothetical protein
89	 33.70	0	115647..116999	+	450	189501559	-	Aasi_0099	-	hypothetical protein
90	 34.52	0	117111..117362	+	83	189501560	-	Aasi_0100	-	ribosomal protein S20
91	 37.30	0	117463..118194	+	243	189501561	-	Aasi_0101	-	DNA repair protein RadC
92	 35.32	0	118282..120702	+	806	189501562	-	Aasi_0102	-	phenylalanyl-tRNA synthetase, beta subunit
93	 34.36	0	120712..121002	+	96	189501563	-	Aasi_0103	-	hypothetical protein
94	 34.74	0	121009..121293	+	94	189501564	-	Aasi_0104	-	hypothetical protein
95	 39.09	+1	121286..122032	-	248	189501565	-	Aasi_0105	-	3-oxoacyl-(acyl-carrier-protein) reductase
96	 32.73	0	122543..125842	+	1099	189501566	-	Aasi_0106	-	hypothetical protein
97	 32.05	-1	126094..126405	+	103	189501567	-	Aasi_0107	-	ribosomal protein L21
98	 39.39	+1	126413..126676	+	87	189501568	-	Aasi_0108	-	ribosomal protein L27
99	 35.83	0	126750..127109	+	119	189501569	-	Aasi_0109	-	ribosomal protein S16
100	 39.48	+1	127661..128425	-	254	189501570	-	Aasi_0110	-	Leucine-rich repeat, ribonuclease inhibitor subtype
35.54	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.