IslandPath Analysis: Rhodospirillum centenum SW



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.48   STD DEV: 3.92
Rhodospirillum centenum SW, complete genome - 1..4355548
4002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.93	0	11..3343	+	1110	209963360	-	RC1_0011	-	hypothetical protein
2	 73.83	0	3443..4321	-	292	209963361	-	RC1_0012	-	hypothetical protein
3	 71.90	0	4450..6072	+	540	209963362	-	RC1_0013	-	Acyl-CoA dehydrogenase
4	 74.40	+1	6093..6971	-	292	209963363	-	RC1_0014	-	transcriptional regulator, LysR family protein
5	 71.85	0	7105..8280	+	391	209963364	-	RC1_0015	-	C4-dicarboxylate transporter
6	 72.46	0	8374..8511	-	45	209963365	-	RC1_0016	-	hypothetical protein
7	 75.53	+1	8757..10019	-	420	209963366	-	RC1_0017	-	RNA polymerase sigma-70 factor, ECF family protein
8	 67.14	0	10048..10470	-	140	209963367	-	RC1_0018	-	hypothetical protein
9	 71.69	0	10577..11014	+	145	209963368	-	RC1_0019	-	hypothetical protein
10	 57.52	-2	11027..11179	-	50	209963369	-	RC1_0020	-	hypothetical protein
11	 70.74	0	11192..11731	-	179	209963370	-	RC1_0021	-	hypothetical protein
12	 72.63	0	11941..12627	+	228	209963371	-	RC1_0022	-	hypothetical protein
13	 74.60	+1	12634..12759	-	41	209963372	-	RC1_0023	-	hypothetical protein
14	 69.06	0	13233..15074	+	613	209963373	-	RC1_0024	-	ABC transporter, ATP-binding protein, putative
15	 70.09	0	15169..15636	+	155	209963374	-	RC1_0025	-	acetyltransferase, gnat family
16	 70.30	0	15740..16894	-	384	209963375	-	RC1_0026	-	phosphodiesterase
17	 67.36	0	16957..19248	-	763	209963376	-	RC1_0027	-	TonB-dependent receptor, putative
18	 72.77	0	19580..20725	+	381	209963377	-	RC1_0028	-	glucose/sorbosone dehydrogenase, putative
19	 65.57	-1	20871..22325	+	484	209963378	gatB	RC1_0029	-	aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B, GatB putative
20	 71.84	0	22431..23126	-	231	209963379	-	RC1_0030	-	hypothetical protein
21	 69.12	0	23904..24107	-	67	209963380	-	RC1_0032	-	phage-related hypothetical protein
22	 64.05	-1	24541..25305	+	254	209963381	-	RC1_0033	-	hypothetical protein
23	 63.42	-1	25315..26238	+	307	209963382	-	RC1_0034	-	hypothetical protein
24	 70.51	0	26400..26789	-	129	209963383	-	RC1_0035	-	hypothetical protein
25	 68.53	0	26786..28126	-	446	209963384	-	RC1_0036	-	phage site-specific recombinase, resolvase, putative
26	 69.22	0	28123..28632	-	169	209963385	-	RC1_0037	-	hypothetical protein
27	 71.88	0	28632..28823	-	63	209963386	-	RC1_0038	-	hypothetical protein
28	 58.64	-2	29140..29463	+	107	209963387	-	RC1_0039	-	DNA-binding protein, putative
29	 64.60	-1	29565..30194	+	209	209963388	-	RC1_0040	-	hypothetical protein
30	 69.15	0	30308..31474	+	388	209963389	-	RC1_0041	-	hypothetical protein
31	 64.77	-1	31782..32414	+	210	209963390	-	RC1_0042	-	hypothetical protein
32	 65.59	-1	32554..32739	+	61	209963391	-	RC1_0043	-	hypothetical protein
33	 73.53	0	32871..33176	+	101	209963392	-	RC1_0044	-	hypothetical protein
34	 70.28	0	33173..33670	+	165	209963393	-	RC1_0045	-	hypothetical protein
35	 68.90	0	33787..34638	+	283	209963394	-	RC1_0046	-	hypothetical protein
36	 71.43	0	34650..35405	+	251	209963395	-	RC1_0047	-	hypothetical protein
37	 71.09	0	35390..35683	+	97	209963396	-	RC1_0048	-	hypothetical protein
38	 69.40	0	35680..36045	+	121	209963397	-	RC1_0049	-	hypothetical protein
39	 67.59	0	36060..36275	+	71	209963398	-	RC1_0050	-	hypothetical protein
40	 69.92	0	36272..37069	+	265	209963399	-	RC1_0051	-	hypothetical protein
41	 68.25	0	37066..38388	+	440	209963400	-	RC1_0052	-	exodeoxyribonuclease, putative
42	 70.66	0	38385..40913	+	842	209963401	-	RC1_0053	-	virulence-associated protein E, putative
43	 54.45	-2	40915..41577	-	220	209963402	-	RC1_0054	-	hypothetical protein
44	 61.73	-2	41647..45231	-	1194	209963403	-	RC1_0055	-	hypothetical protein
45	 70.93	0	45531..46070	+	179	209963404	-	RC1_0056	-	hypothetical protein
46	 73.08	0	46067..46378	+	103	209963405	-	RC1_0057	-	ribonucleotide reductase, putative
47	 70.20	0	46375..46572	+	65	209963406	-	RC1_0058	-	hypothetical protein
48	 71.30	0	46565..47017	+	150	209963407	-	RC1_0059	-	hypothetical protein
49	 70.49	0	47407..48792	+	461	209963408	-	RC1_0060	-	DNA methylase, putative
50	 69.98	0	48797..50035	+	412	209963409	-	RC1_0061	-	DNA methylase, putative
51	 72.50	0	51064..51594	-	176	209963410	-	RC1_0063	-	hypothetical protein
52	 69.05	0	51695..51946	-	83	209963411	-	RC1_0064	-	hypothetical protein
53	 73.10	0	52023..52613	+	196	209963412	-	RC1_0065	-	hypothetical protein
54	 69.61	0	52465..54471	+	668	209963413	-	RC1_0066	-	phage terminase large subunit (GpA)
55	 67.58	0	54459..54677	+	72	209963414	-	RC1_0067	-	hypothetical protein
56	 70.43	0	54677..56164	+	495	209963415	-	RC1_0068	-	phage portal protein, lambda family
57	 70.93	0	56171..58138	+	655	209963416	-	RC1_0069	-	phage protease
58	 70.30	0	58142..58636	+	164	209963417	amiB	RC1_0070	-	N-acetylmuramoyl-L-alanine amidase
59	 74.71	+1	58649..58822	+	57	209963418	-	RC1_0071	-	hypothetical protein
60	 69.91	0	58859..59197	+	112	209963419	-	RC1_0072	-	hypothetical protein
61	 55.42	-2	59248..60963	-	571	209963420	-	RC1_0073	-	hypothetical protein
62	 66.03	-1	61028..61651	-	207	209963421	-	RC1_0074	-	hypothetical protein
63	 71.87	0	61687..62013	-	108	209963422	-	RC1_0075	-	hypothetical protein
64	 75.49	+1	62018..62629	+	203	209963423	-	RC1_0076	-	hypothetical protein
65	 75.56	+1	62633..63082	+	149	209963424	-	RC1_0077	-	hypothetical protein
66	 67.99	0	63131..64036	+	301	209963425	-	RC1_0078	-	hypothetical protein
67	 69.44	0	64051..64410	+	119	209963426	-	RC1_0079	-	hypothetical protein
68	 67.38	0	64620..64760	+	46	209963427	-	RC1_0080	-	hypothetical protein
69	 63.47	-1	64767..65141	-	124	209963428	-	RC1_0081	-	plasmid stabilization system protein, RelE
70	 67.99	0	65138..65440	-	100	209963429	-	RC1_0082	-	hypothetical protein
71	 65.57	-1	65537..65719	-	60	209963430	-	RC1_0083	-	hypothetical protein
72	 74.67	+1	65901..68573	+	890	209963431	-	RC1_0084	-	phage tail tape measure protein, putative
73	 72.70	0	68570..69166	+	198	209963432	-	RC1_0085	-	hypothetical protein
74	 74.42	+1	69163..69846	+	227	209963433	-	RC1_0086	-	hypothetical protein
75	 72.81	0	69843..70412	+	189	209963434	-	RC1_0087	-	hypothetical protein
76	 77.95	+1	70448..70828	+	126	209963435	-	RC1_0088	-	hypothetical protein
77	 73.65	0	70828..72258	+	476	209963436	-	RC1_0089	-	phage tail protein, putative
78	 74.23	0	72263..73531	+	422	209963437	-	RC1_0090	-	hypothetical protein
79	 69.47	0	73535..74962	+	475	209963438	-	RC1_0091	-	hypothetical protein
80	 65.20	-1	74989..75261	+	90	209963439	-	RC1_0092	-	hypothetical protein
81	 61.04	-2	75547..76293	+	248	209963440	-	RC1_0093	-	phage protein Gp37
82	 60.95	-2	76299..77120	-	273	209963441	-	RC1_0094	-	hypothetical protein
83	 61.11	-2	77143..79824	-	893	209963442	-	RC1_0095	-	type III restriction enzyme, res subunit, putative
84	 60.93	-2	79821..80849	-	342	209963443	-	RC1_0096	-	DNA-binding protein, putative
85	 57.12	-2	80846..82510	-	554	209963444	-	RC1_0097	-	type III restriction-modification system methyltransferase, putative
86	 64.14	-1	82507..84171	-	554	209963445	-	RC1_0098	-	hypothetical protein
87	 58.46	-2	84332..87208	-	958	209963446	-	RC1_0099	-	helicase, SNF2 family, putative
88	 57.56	-2	87213..87662	-	149	209963447	-	RC1_0100	-	hypothetical protein
89	 75.81	+1	88616..89818	-	400	209963448	moeA	RC1_0101	-	molybdopterin biosynthesis protein MoeA
90	 71.96	0	89815..90324	-	169	209963449	moaC	RC1_0102	-	molybdenum cofactor biosynthesis protein C
91	 73.43	0	90329..91141	-	270	209963450	trpC	RC1_0103	-	indole-3-glycerol phosphate synthase
92	 72.32	0	91138..92163	-	341	209963451	trpD	RC1_0104	-	anthranilate phosphoribosyltransferase
93	 69.27	0	92202..92816	-	204	209963452	trpG	RC1_0105	-	anthranilate synthase component II, putative
94	 70.15	0	92922..93323	+	133	209963453	hmrR	RC1_0106	-	HTH-type transcriptional regulator HmrR
95	 71.09	0	93812..94534	+	240	209963454	-	RC1_0107	-	hypothetical protein
96	 68.63	0	94603..94806	+	67	209963455	-	RC1_0108	-	hypothetical protein
97	 68.10	0	94876..96405	-	509	209963456	trpE	RC1_0109	-	anthranilate synthase component I
98	 71.11	0	96412..98280	-	622	209963457	-	RC1_0110	-	peptidyl-prolyl cis-trans isomerse, putative
99	 68.25	0	98290..98541	+	83	209963458	-	RC1_0111	-	hypothetical protein
100	 71.16	0	98520..99275	+	251	209963459	tpiA	RC1_0112	-	triosephosphate isomerase
70.48	MEAN

3.92	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.