IslandPath Analysis: Deinococcus radiodurans R1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.98   STD DEV: 5.06
Deinococcus radiodurans R1 chromosome 2, complete sequence - 1..412348
368 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.07	0	653..1435	+	260	15807673	-	DR_A0001	-	ParA family chromosome partitioning ATPase
2	 58.50	-1	1432..2313	+	293	15807674	-	DR_A0002	-	ParB family chromosome partitioning protein
3	 59.49	-1	2418..3881	-	487	15807675	-	DR_A0003	-	succinate-semialdehyde dehydrogenase
4	 66.98	0	4024..4668	+	214	15807676	-	DR_A0004	-	hypothetical protein
5	 62.93	0	4719..5897	-	392	15807677	-	DR_A0005	-	alcohol dehydrogenase, zinc-containing
6	 69.52	0	5894..6700	-	268	15807678	-	DR_A0006	-	hypothetical protein
7	 70.64	0	6839..7744	+	301	15807679	-	DR_A0007	-	ABC transporter, ATP-binding protein, putative
8	 66.54	0	7861..8652	+	263	15807680	-	DR_A0008	-	hypothetical protein
9	 67.85	0	8809..9819	+	336	15807681	-	DR_A0009	-	hypothetical protein
10	 68.71	0	9816..10451	+	211	15807682	-	DR_A0010	-	DNA-binding response regulator
11	 72.39	+1	10477..12030	-	517	15807683	-	DR_A0011	-	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase
12	 68.91	0	11972..13444	-	490	161579495	-	DR_A0012	-	hypothetical protein
13	 65.78	0	13432..15123	+	563	15807685	-	DR_A0013	-	ferredoxin-nitrite reductase
14	 66.32	0	15120..15698	+	192	15807686	-	DR_A0014	-	adenylylsulfate kinase
15	 69.01	0	15685..16452	+	255	15807687	-	DR_A0015	-	phosphoadenosine phosphosulfate reductase
16	 68.04	0	16557..17720	+	387	15807688	sat	DR_A0016	-	sulfate adenylyltransferase
17	 64.69	0	17806..18312	+	168	15807689	-	DR_A0017	-	hypothetical protein
18	 66.58	0	18472..20045	-	524	15808028	-	DR_A0018	-	5'-nucleotidase
19	 70.40	0	20095..21165	+	356	15807690	-	DR_A0019	-	hypothetical protein
20	 69.44	0	21138..21677	+	179	15807691	-	DR_A0020	-	cobinamide kinase/cobinamide phosphate guanylyltransferase
21	 58.55	-1	21944..22633	-	229	15807692	-	DR_A0021	-	hypothetical protein
22	 65.32	0	22683..24833	+	716	15807693	-	DR_A0022	-	hypothetical protein
23	 70.93	0	24806..25720	+	304	15807694	-	DR_A0023	-	hypothetical protein
24	 70.20	0	25707..26216	+	169	15807695	-	DR_A0024	-	hypothetical protein
25	 70.33	0	26710..27255	+	181	15808029	-	DR_A0025	-	hypothetical protein
26	 68.23	0	27700..28083	+	127	15807696	-	DR_A0026	-	hypothetical protein
27	 66.19	0	28266..29744	+	492	15807697	-	DR_A0027	-	hypothetical protein
28	 61.27	-1	29748..30266	+	172	15807698	-	DR_A0028	-	hypothetical protein
29	 65.42	0	30295..31659	+	454	15807699	-	DR_A0029	-	4-aminobutyrate aminotransferase
30	 64.71	0	31738..33318	+	526	15807700	-	DR_A0030	-	1-pyrroline-5-carboxylate dehydrogenase
31	 57.09	-1	33474..34559	+	361	15807701	-	DR_A0031	-	glucose-1-phosphate thymidylyltransferase, putative
32	 61.04	-1	34788..35906	+	372	15807702	-	DR_A0032	-	mannose-1-phosphate guanylyltransferase
33	 62.72	0	35903..37573	+	556	15807703	-	DR_A0033	-	ExoP-related protein
34	 52.97	-2	37578..39023	+	481	15807704	-	DR_A0034	-	UDP-galactose-lipid carrier transferase
35	 40.46	-2	39026..40288	+	420	15807705	-	DR_A0035	-	O-antigen transporter RfbX, putative
36	 37.19	-2	40439..41656	+	405	15807706	-	DR_A0036	-	hypothetical protein
37	 39.21	-2	41643..42629	+	328	15807707	-	DR_A0037	-	glycosyltransferase
38	 37.01	-2	42632..43447	+	271	15807708	-	DR_A0038	-	rhamnosyltransferase, putative
39	 45.16	-2	43517..44548	+	343	15807709	-	DR_A0039	-	mannosyltransferase
40	 53.89	-2	44545..45648	+	367	15807710	-	DR_A0040	-	first mannosyl transferase
41	 57.72	-1	45652..46746	+	364	15807711	-	DR_A0041	-	thymidine diphosphoglucose 4,6-dehydratase
42	 60.72	-1	46743..47633	+	296	15807712	-	DR_A0042	-	glucose-1-phosphate thymidylyltransferase
43	 58.47	-1	47626..48174	+	182	15807713	-	DR_A0043	-	lipopolysaccharide biosynthesis protein, putative
44	 61.69	-1	48171..48914	+	247	15807714	-	DR_A0044	-	dTDP-4-rhamnose reductase-related protein
45	 60.04	-1	48918..49838	-	306	15807715	-	DR_A0045	-	hypothetical protein
46	 63.98	0	49835..50989	-	384	15807716	-	DR_A0046	-	hypothetical protein
47	 62.66	0	51064..52485	+	473	15807717	-	DR_A0047	-	phospho-sugar mutase, putative
48	 63.64	0	52507..53430	-	307	15807718	-	DR_A0048	-	mannose-6-phosphate isomerase, putative
49	 63.56	0	53466..53915	-	149	15807719	-	DR_A0049	-	response regulator
50	 69.62	0	53908..56175	-	755	15807720	-	DR_A0050	-	photoreceptor
51	 67.62	0	56172..56767	-	198	15808030	-	DR_A0051	-	Heme oxygenase
52	 69.91	0	56791..58176	+	461	15807721	-	DR_A0053	-	acetyl-CoA acetyltransferase
53	 68.96	0	58122..59516	+	464	15807722	-	DR_A0054	-	succinyl-CoA:3-ketoacid-CoA transferase, putative
54	 72.20	+1	59503..60405	+	300	15807723	-	DR_A0055	-	ribokinase
55	 59.92	-1	60631..61119	-	162	15807724	-	DR_A0056	-	hypothetical protein
56	 63.85	0	61138..62877	-	579	15807725	-	DR_A0057	-	TerF-related protein
57	 63.31	0	62994..63500	-	168	15807726	-	DR_A0058	-	hypothetical protein
58	 65.83	0	63822..64418	-	198	15807727	-	DR_A0059	-	hypothetical protein
59	 68.64	0	64486..65499	+	337	15807728	-	DR_A0060	-	hypothetical protein
60	 67.49	0	65605..67536	+	643	15807729	-	DR_A0061	-	drug transport protein, putative
61	 71.56	0	67602..68234	+	210	15807730	-	DR_A0062	-	acetyltransferase, putative
62	 72.27	+1	68254..69306	-	350	15807731	-	DR_A0063	-	hypothetical protein
63	 71.13	0	69403..70857	-	484	15807732	-	DR_A0064	-	serine protease
64	 64.25	0	71040..71453	+	137	15807733	-	DR_A0065	-	DNA-binding protein HB
65	 72.37	+1	71520..72641	-	373	15807734	-	DR_A0066	-	N-acetylglucosamine-6-phosphate deacetylase
66	 63.33	0	72656..73285	-	209	15807735	-	DR_A0067	-	CoA transferase, subunit B
67	 63.36	0	73285..73980	-	231	15807736	-	DR_A0068	-	CoA transferase, subunit A
68	 68.73	0	74064..75563	+	499	15807737	-	DR_A0069	-	cleavage and polyadenylation specificity factor-related protein
69	 71.88	0	75622..76293	+	223	15807738	-	DR_A0070	-	hypothetical protein
70	 68.78	0	76304..76681	-	125	15807739	-	DR_A0071	-	transcriptional repressor SmtB
71	 71.01	0	76678..76953	-	91	15807740	-	DR_A0072	-	hypothetical protein
72	 71.19	0	76946..79132	-	728	15807741	-	DR_A0073	-	cation-transporting P-type ATPase
73	 61.69	-1	79518..80240	-	240	15807742	-	DR_A0074	-	hypothetical protein
74	 65.73	0	80554..82683	+	709	15807743	-	DR_A0075	-	transposase, putative
75	 67.43	0	82680..83462	+	260	15807744	-	DR_A0076	-	hypothetical protein
76	 65.27	0	83459..83887	+	142	15807745	-	DR_A0077	-	hypothetical protein
77	 67.81	0	83887..84237	+	116	15807746	-	DR_A0078	-	hypothetical protein
78	 63.57	0	84218..84637	+	139	15807747	-	DR_A0079	-	hypothetical protein
79	 72.76	+1	84634..84912	+	92	15807748	-	DR_A0080	-	hypothetical protein
80	 72.08	+1	84909..85259	+	116	15807749	-	DR_A0081	-	hypothetical protein
81	 68.82	0	85369..85926	+	185	15807750	-	DR_A0082	-	hypothetical protein
82	 65.64	0	85939..86328	+	129	15807751	-	DR_A0083	-	hypothetical protein
83	 66.20	0	86321..86533	+	70	15807752	-	DR_A0084	-	hypothetical protein
84	 65.80	0	86729..86959	+	76	15807753	-	DR_A0085	-	hypothetical protein
85	 67.61	0	86956..87486	+	176	15807754	-	DR_A0086	-	hypothetical protein
86	 63.87	0	87486..87986	+	166	15807755	-	DR_A0087	-	hypothetical protein
87	 61.64	-1	88231..88608	-	125	15807756	-	DR_A0088	-	hypothetical protein
88	 68.79	0	88680..88961	+	93	15807757	-	DR_A0089	-	hypothetical protein
89	 58.45	-1	88888..89325	-	145	15807758	-	DR_A0090	-	hypothetical protein
90	 65.22	0	89324..89668	+	114	15807759	-	DR_A0091	-	hypothetical protein
91	 65.36	0	89694..89999	+	101	15807760	-	DR_A0092	-	hypothetical protein
92	 62.59	0	90010..90549	+	179	15807761	-	DR_A0093	-	hypothetical protein
93	 64.56	0	90546..91922	+	458	15807762	-	DR_A0094	-	hypothetical protein
94	 62.60	0	91974..92366	+	130	15807763	-	DR_A0095	-	hypothetical protein
95	 66.88	0	92338..93270	+	310	15807764	-	DR_A0096	-	hypothetical protein
96	 69.69	0	93267..94028	+	253	15807765	-	DR_A0097	-	head morphogenesis protein, putative
97	 54.85	-2	94038..94367	+	109	15807766	-	DR_A0098	-	hypothetical protein
98	 62.81	0	95260..96114	+	284	15807767	-	DR_A0099	-	hypothetical protein
99	 61.90	-1	96178..96429	+	83	15807768	-	DR_A0100	-	hypothetical protein
100	 69.67	0	96429..96794	+	121	15807769	-	DR_A0101	-	hypothetical protein
66.98	MEAN

5.06	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.