IslandPath Analysis: Thermus thermophilus HB8



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.33   STD DEV: 3.26
Thermus thermophilus HB8, complete genome - 1..1849742
1973 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 71.45	0	55..1182	+	375	55979970	-	TTHA0001	-	DNA polymerase III, beta subunit
2	 69.27	0	1235..2503	+	422	55979971	-	TTHA0002	-	enolase (2-phosphoglycerate dehydratase)
3	 71.02	0	2490..3914	+	474	55979972	-	TTHA0003	-	pyruvate kinase
4	 71.87	0	3915..4895	-	326	55979973	-	TTHA0004	-	hypothetical protein
5	 70.24	0	4892..5506	-	204	55979974	-	TTHA0005	-	metallo-beta-lactamase family protein
6	 67.05	0	5493..7340	-	615	55979975	-	TTHA0006	-	1-deoxy-D-xylulose-5-phosphate synthase
7	 70.54	0	7349..7993	-	214	55979976	-	TTHA0007	-	hypothetical protein
8	 66.67	0	8037..8699	-	220	55979977	-	TTHA0008	-	phage shock protein A
9	 68.42	0	8799..8969	+	56	55979978	-	TTHA0009	-	hypothetical protein
10	 63.44	-1	9022..9114	+	30	55979979	-	TTHA0010	-	hypothetical protein
11	 67.66	0	12493..13503	+	336	55979980	-	TTHA0011	-	molybdenum cofactor biosynthesis protein A (MoaA)
12	 70.64	0	13481..14311	-	276	55979981	-	TTHA0012	-	integral membrane protein
13	 72.21	0	14329..15321	+	330	55979982	-	TTHA0013	-	geranylgeranyl diphosphate synthetase
14	 73.87	+1	15508..16104	+	198	55979983	-	TTHA0014	-	hypothetical protein
15	 69.50	0	16106..17128	+	340	55979984	-	TTHA0015	-	LytB protein
16	 68.51	0	17121..18149	+	342	55979985	-	TTHA0016	-	tRNA-dihydrouridine synthase A
17	 69.83	0	18045..18677	-	210	55979986	-	TTHA0017	-	TPR repeat-containing protein
18	 70.22	0	18679..20001	-	440	55979987	-	TTHA0018	-	glycogen synthase (starch [ glycogen] synthase)
19	 69.89	0	20003..20374	-	123	55979988	-	TTHA0019	-	hypothetical protein
20	 70.39	0	20401..21072	-	223	55979989	-	TTHA0020	-	response regulator
21	 72.93	+1	21081..21767	-	228	55979990	-	TTHA0021	-	putative NADPH oxidoreductase
22	 65.46	-1	21770..23014	-	414	55979991	-	TTHA0022	-	glucose-1-phosphate adenylyltransferase
23	 72.30	0	23080..25173	+	697	55979992	-	TTHA0023	-	putative ATP-dependent protease La
24	 68.09	0	25272..27593	-	773	55979993	-	TTHA0024	-	penicillin acylase II precursor
25	 72.15	0	27605..28078	+	157	55979994	-	TTHA0025	-	hypothetical protein
26	 68.57	0	28088..28297	+	69	55979995	-	TTHA0026	-	hypothetical protein
27	 65.72	-1	28350..29300	+	316	55979996	-	TTHA0027	-	potassium channel, beta subunit (oxidoreductase)
28	 69.86	0	29417..30448	+	343	55979997	-	TTHA0028	-	putative macrolide-efflux protein
29	 73.90	+1	30535..32013	+	492	55979998	-	TTHA0029	-	hypothetical protein
30	 57.13	-2	32270..33244	+	324	55979999	-	TTHA0030	-	hypothetical protein
31	 66.41	0	33231..34388	+	385	55980000	-	TTHA0031	-	hypothetical protein
32	 68.31	0	34463..34705	+	80	55980001	-	TTHA0032	-	hypothetical protein
33	 69.78	0	34687..35103	+	138	55980002	-	TTHA0033	-	hypothetical protein
34	 54.66	-2	35234..36199	+	321	55980003	-	TTHA0034	-	hypothetical protein
35	 62.77	-2	36233..37336	+	367	55980004	-	TTHA0035	-	hypothetical protein
36	 56.62	-2	37564..38499	+	311	55980005	-	TTHA0036	-	hypothetical protein
37	 71.01	0	38506..39657	+	383	55980006	-	TTHA0037	-	hypothetical protein
38	 69.86	0	39654..40811	+	385	55980007	-	TTHA0038	-	hypothetical protein
39	 71.49	0	40878..41126	+	82	55980008	-	TTHA0039	-	hypothetical protein
40	 68.59	0	41137..42486	+	449	55980009	-	TTHA0040	-	FAD/FMN-containing dehydrogenase
41	 73.02	+1	42483..43064	-	193	55980010	-	TTHA0041	-	hypothetical protein
42	 63.30	-1	43369..43665	-	98	55980011	rpmB	TTHA0042	-	50S ribosomal protein L28
43	 72.85	+1	43731..44183	+	150	55980012	-	TTHA0043	-	lipoprotein signal peptidase
44	 67.36	0	44202..45353	-	383	55980013	-	TTHA0044	-	putative Na(+)/H(+) antiporter
45	 69.99	0	45343..46635	-	430	55980014	-	TTHA0045	-	potassium uptake protein TrkA
46	 70.29	0	46697..47854	-	385	55980015	-	TTHA0046	-	aspartate aminotransferase
47	 67.32	0	47885..48190	+	101	55980016	-	TTHA0047	-	nucleotidyltransferase
48	 64.72	-1	48198..48557	+	119	55980017	-	TTHA0048	-	hypothetical protein
49	 73.20	+1	48554..49471	-	305	55980018	-	TTHA0049	-	diacylglycerol kinase-related protein
50	 72.81	+1	49489..50172	+	227	55980019	-	TTHA0050	-	phosphoglycerate mutase family protein
51	 71.93	0	50129..50983	+	284	55980020	-	TTHA0051	-	hypothetical protein
52	 69.94	0	50953..51837	-	294	55980021	-	TTHA0052	-	putative deacetylase
53	 72.41	0	51878..52486	+	202	55980022	-	TTHA0053	-	hypothetical protein
54	 70.89	0	52473..52922	-	149	55980023	-	TTHA0054	-	RNA methyltransferase
55	 71.35	0	52922..54457	-	511	55980024	-	TTHA0055	-	ATP-dependent DNA helicase RecG-related protein
56	 70.84	0	54673..56013	+	446	55980025	-	TTHA0056	-	ammonium transporter
57	 67.24	0	56010..56360	+	116	55980026	-	TTHA0057	-	nitrogen regulatory protein P-II
58	 72.54	0	56365..57267	+	300	55980027	-	TTHA0058	-	transcriptional repressor of class I heat-shock genes
59	 70.68	0	57257..57928	+	223	55980028	-	TTHA0059	-	molybdenum cofactor biosynthesis protein D/E
60	 73.33	+1	57999..58238	+	79	55980029	-	TTHA0060	-	hypothetical protein
61	 71.65	0	58225..58545	-	106	55980030	-	TTHA0061	-	hypothetical protein
62	 73.78	+1	58555..59637	-	360	55980031	-	TTHA0062	-	alanine racemase
63	 73.15	+1	59652..61763	-	703	55980032	-	TTHA0063	-	primosomal protein N
64	 74.13	+1	61796..62854	+	352	55980033	-	TTHA0064	-	hypothetical protein
65	 73.79	+1	62864..63523	+	219	55980034	-	TTHA0065	-	glycolate oxidase subunit GlcE
66	 67.22	0	63528..63887	+	119	55980035	-	TTHA0066	-	hypothetical protein
67	 75.74	+1	63918..64898	-	326	55980036	-	TTHA0067	-	L-asparaginase II
68	 71.58	0	64895..65179	-	94	55980037	-	TTHA0068	-	hypothetical protein
69	 71.77	0	65117..65998	+	293	55980038	-	TTHA0069	-	ABC transporter, periplasmic binding protein
70	 73.11	+1	66001..66636	+	211	55980039	-	TTHA0070	-	ABC transporter permease protein
71	 76.00	+2	66633..67307	+	224	55980040	-	TTHA0071	-	ABC-transporter, ATP-binding subunit
72	 71.58	0	67430..68548	+	372	55980041	-	TTHA0072	-	hypothetical protein
73	 73.86	+1	68490..68753	-	87	55980042	-	TTHA0073	-	hypothetical protein
74	 72.40	0	68753..71245	-	830	55980043	-	TTHA0074	-	DNA topoisomerase IA
75	 67.85	0	71430..78038	+	2202	55980044	-	TTHA0075	-	ribonucleoside-diphosphate reductase
76	 74.67	+1	78135..78746	+	203	55980045	-	TTHA0076	-	phosphoribosylanthranilate isomerase
77	 71.19	0	78743..79537	+	264	55980046	-	TTHA0077	-	inositol monophophatase family protein
78	 71.39	0	79613..80332	-	239	55980047	-	TTHA0078	-	hypothetical protein
79	 70.46	0	80335..80571	-	78	55980048	-	TTHA0079	-	hypothetical protein
80	 66.37	0	81021..81359	-	112	55980049	-	TTHA0080	-	hypothetical protein
81	 67.76	0	81423..82061	+	212	55980050	-	TTHA0081	-	hypothetical protein
82	 70.16	0	82058..82801	+	247	55980051	-	TTHA0082	-	phosphoesterase
83	 71.57	0	82794..83609	+	271	55980052	ksgA	TTHA0083	-	dimethyladenosine transferase
84	 65.56	-1	83765..84124	+	119	55980053	-	TTHA0084	-	NADH-quinone oxidoreductase chain 7
85	 67.58	0	84115..84660	+	181	55980054	-	TTHA0085	-	NADH-quinone oxidoreductase chain 6
86	 66.83	0	84664..85287	+	207	55980055	-	TTHA0086	-	NADH-quinone oxidoreductase chain 5
87	 66.02	-1	85284..86513	+	409	55980056	-	TTHA0087	-	NADH-quinone oxidoreductase chain 4
88	 66.30	0	86524..87069	+	181	55980057	-	TTHA0088	-	NADH-quinone oxidoreductase chain 2
89	 67.43	0	87066..88382	+	438	55980058	-	TTHA0089	-	NADH-quinone oxidoreductase chain 1
90	 70.41	0	88384..90735	+	783	55980059	-	TTHA0090	-	NADH-quinone oxidoreductase chain 3
91	 65.57	-1	90732..91829	+	365	55980060	-	TTHA0091	-	NADH-quinone oxidoreductase chain 8
92	 67.94	0	91826..92374	+	182	55980061	-	TTHA0092	-	NADH-quinone oxidoreductase chain 9
93	 68.93	0	92371..92901	+	176	55980062	-	TTHA0093	-	NADH-quinone oxidoreductase chain 10
94	 69.44	0	92898..93185	+	95	55980063	-	TTHA0094	-	NADH-quinone oxidoreductase chain 11
95	 68.04	0	93188..95008	+	606	55980064	-	TTHA0095	-	NADH-quinone oxidoreductase chain 12
96	 69.22	0	95002..96411	+	469	55980065	-	TTHA0096	-	NADH-quinone oxidoreductase chain 13
97	 72.51	0	96408..97691	+	427	55980066	-	TTHA0097	-	NADH-quinone oxidoreductase chain 14
98	 69.98	0	97704..99482	+	592	55980067	argS	TTHA0098	-	arginyl-tRNA synthetase
99	 74.02	+1	99487..100533	+	348	55980068	-	TTHA0099	-	serine protease
100	 73.57	+1	100538..101986	+	482	55980069	-	TTHA0100	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
69.33	MEAN

3.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.