IslandPath Analysis: Clostridium botulinum A str. Hall



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.84   STD DEV: 4.00
Clostridium botulinum A str. Hall, complete genome - 1..3760560
3404 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.77	0	1..1347	+	448	153935412	dnaA	CLC_0001	-	chromosomal replication initiation protein
2	 25.36	0	1610..2713	+	367	153937046	dnaN	CLC_0002	-	DNA polymerase III subunit beta
3	 24.15	-1	2732..2938	+	68	153936289	-	CLC_0003	-	S4 domain-containing protein
4	 23.11	-1	3007..4101	+	364	153935303	recF	CLC_0004	-	recombination protein F
5	 28.41	0	4122..4385	+	87	153937594	-	CLC_0005	-	hypothetical protein
6	 31.87	0	4403..6316	+	637	153936801	gyrB	CLC_0006	-	DNA gyrase subunit B
7	 28.70	0	6342..8867	+	841	153935617	gyrA	CLC_0007	-	DNA gyrase subunit A
8	 18.76	-2	14442..14894	+	150	153934873	-	CLC_0017	-	hypothetical protein
9	 24.90	0	14910..15431	+	173	153937121	-	CLC_0018	-	putative transcriptional regulator
10	 29.64	0	15433..16596	+	387	153936038	-	CLC_0019	-	iron-sulfur cluster-binding protein
11	 22.74	-1	16601..19282	+	893	153937022	-	CLC_0020	-	hypothetical protein
12	 22.01	-1	19419..20195	+	258	153937535	-	CLC_0021	-	ErfK/YbiS/YcfS/YnhG family protein
13	 25.18	0	20220..21617	+	465	153935047	-	CLC_0022	-	oxidoreductase, FAD dependent
14	 24.29	-1	21634..21987	+	117	153934720	-	CLC_0023	-	hypothetical protein
15	 29.59	0	22357..23637	+	426	153937253	serS-1	CLC_0024	-	seryl-tRNA synthetase
16	 30.00	0	26198..26317	-	39	153936685	-	CLC_0036	-	hypothetical protein
17	 36.09	+1	26616..26978	+	120	153936471	-	CLC_0037	-	hypothetical protein
18	 25.21	0	27051..27899	+	282	153936191	-	CLC_0038	-	antibiotic ABC transporter, ATP-binding protein
19	 22.54	-1	27908..28741	+	277	153936228	-	CLC_0039	-	hypothetical protein
20	 19.65	-2	28753..29556	+	267	153935706	-	CLC_0040	-	hypothetical protein
21	 24.23	-1	29573..30385	+	270	153934746	-	CLC_0041	-	hypothetical protein
22	 23.20	-1	30625..31512	-	295	153937664	psd-2	CLC_0042	-	phosphatidylserine decarboxylase
23	 23.14	-1	31615..33213	-	532	153937271	-	CLC_0043	-	hypothetical protein
24	 23.36	-1	33289..33609	-	106	153934830	-	CLC_0044	-	hypothetical protein
25	 23.98	-1	34004..35542	+	512	153935787	-	CLC_0046	-	putative sensory box sigma-54 dependent transcriptional regulator
26	 33.50	+1	35702..36904	+	400	153937734	megL	CLC_0047	-	methionine gamma-lyase
27	 26.94	0	37028..37465	+	145	153937691	-	CLC_0048	-	cytidine/deoxycytidylate deaminase family protein
28	 27.92	0	38110..39735	+	541	153935315	dnaX	CLC_0051	-	DNA polymerase III subunits gamma and tau
29	 36.26	+1	39800..40141	+	113	153934643	-	CLC_0052	-	hypothetical protein
30	 30.49	0	40174..40770	+	198	153937733	recR	CLC_0053	-	recombination protein RecR
31	 26.14	0	40827..41090	+	87	153936595	-	CLC_0054	-	hypothetical protein
32	 23.75	-1	41240..41500	+	86	153935371	bofA	CLC_0055	-	sigma-K factor processing regulatory protein BofA
33	 27.56	0	41651..42343	+	230	153937461	sfsA	CLC_0056	-	sugar fermentation stimulation protein A
34	 29.24	0	42399..42887	+	162	153936479	-	CLC_0057	-	NUDIX family hydrolase
35	 33.33	+1	43005..43727	+	240	153935104	-	CLC_0058	-	hypothetical protein
36	 25.60	0	43861..44649	+	262	153934545	-	CLC_0059	-	iron-sulfur cluster-binding protein
37	 19.75	-2	44668..44829	+	53	153937588	-	CLC_0060	-	hypothetical protein
38	 28.79	0	45212..45916	+	234	153935856	-	CLC_0061	-	ThiF domain-containing protein
39	 24.68	-1	45999..47108	+	369	153935425	-	CLC_0062	-	major facilitator superfamily protein
40	 21.16	-1	47137..48081	+	314	153934499	-	CLC_0063	-	acetyltransferase
41	 28.31	0	53636..54232	-	198	153937546	-	CLC_0071	-	uracil-DNA glycosylase family protein
42	 25.35	0	60394..60957	+	187	153934922	-	CLC_0079	-	RNA polymerase factor sigma-70
43	 27.30	0	60954..62396	+	480	153934549	-	CLC_0080	-	hypothetical protein
44	 28.09	0	68058..68801	+	247	153936847	-	CLC_0088	-	peptidil-prolyl isomerase family protein
45	 26.88	0	74540..75283	+	247	153935622	-	CLC_0094	-	NAD-dependent deacetylase
46	 27.61	0	75469..76377	-	302	153935897	-	CLC_0096	-	LD-carboxypeptidase family protein
47	 25.90	0	76413..77354	-	313	153937176	-	CLC_0097	-	CorA family protein
48	 19.84	-2	77719..78222	+	167	153936188	-	CLC_0098	-	hypothetical protein
49	 25.35	0	79642..79854	+	70	153935414	-	CLC_0100	-	csfB protein-like protein
50	 25.60	0	79833..81281	+	482	153935270	-	CLC_0101	-	Orn/Lys/Arg decarboxylase
51	 27.30	0	81305..82000	+	231	153937766	-	CLC_0102	-	putative thymidylate kinase
52	 33.03	+1	82081..82410	+	109	153935075	-	CLC_0103	-	hypothetical protein
53	 22.65	-1	82428..83372	+	314	153935866	-	CLC_0104	-	DNA polymerase III subunit delta'
54	 29.84	0	83374..84288	+	304	153935087	-	CLC_0105	-	PSP1 domain-containing protein
55	 27.94	0	84300..84503	+	67	153937748	-	CLC_0106	-	hypothetical protein
56	 41.52	+2	84585..84755	+	56	153936953	-	CLC_0107	-	ferredoxin, 4Fe-4S
57	 28.34	0	84876..85616	+	246	153935508	-	CLC_0108	-	hypothetical protein
58	 25.38	0	85636..86490	+	284	153936779	-	CLC_0109	-	tetrapyrrole methylase family protein
59	 34.24	+1	86646..87749	+	367	153937146	-	CLC_0110	-	NlpC/P60 family protein
60	 28.86	0	87849..88094	-	81	153934492	-	CLC_0111	-	AbrB family transcriptional regulator
61	 22.88	-1	88901..89512	+	203	153935199	-	CLC_0112	-	hypothetical protein
62	 29.37	0	89934..91145	+	403	153936391	arcA-1	CLC_0113	-	arginine deiminase
63	 28.85	0	91231..91698	-	155	153934984	ispF	CLC_0114	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
64	 18.02	-2	91774..92106	-	110	153936084	-	CLC_0115	-	hypothetical protein
65	 26.21	0	92434..93303	+	289	153936172	-	CLC_0116	-	polysaccharide deacetylase family protein
66	 23.46	-1	93572..93814	-	80	153936920	-	CLC_0117	-	hypothetical protein
67	 30.21	0	93934..94509	+	191	153937227	spmA	CLC_0118	-	spore maturation protein A
68	 30.83	0	94522..95040	+	172	153934572	-	CLC_0119	-	spore maturation protein B
69	 28.33	0	95285..96622	-	445	153934879	-	CLC_0120	-	MATE efflux family protein
70	 30.72	0	96766..97338	+	190	153935117	udgA	CLC_0121	-	uracil-DNA glycosylase
71	 20.00	-2	97367..97801	+	144	153936342	-	CLC_0122	-	MarR family transcriptional regulator
72	 29.67	0	98183..100120	+	645	153936823	metG	CLC_0123	-	methionyl-tRNA synthetase
73	 22.44	-1	100285..101790	+	501	153937583	-	CLC_0124	-	hypothetical protein
74	 28.05	0	101941..102735	+	264	153934841	-	CLC_0125	-	TatD family hydrolase
75	 32.77	0	102963..104021	+	352	153935585	-	CLC_0126	-	3D/G5 domain-containing protein
76	 32.42	0	104094..104639	+	181	153936070	-	CLC_0127	-	primase-related protein
77	 27.54	0	104641..105468	+	275	153937047	ksgA	CLC_0128	-	dimethyladenosine transferase
78	 26.73	0	105547..106788	+	413	153937636	-	CLC_0129	-	hypothetical protein
79	 21.94	-1	106945..107532	+	195	153936835	-	CLC_0130	-	hypothetical protein
80	 23.14	-1	107701..108534	+	277	153936181	-	CLC_0131	-	putative lipoprotein
81	 28.91	0	108702..109763	+	353	153937786	-	CLC_0132	-	RND family marcrolide efflux protein
82	 29.89	0	109774..110469	+	231	153934714	-	CLC_0133	-	putative macrolide efflux ABC transporter, ATP-binding protein
83	 29.61	0	110466..111674	+	402	153935428	-	CLC_0134	-	putative macrolide efflux ABC transporter, permease protein
84	 32.27	0	111756..112598	+	280	153935572	-	CLC_0135	-	MRP protein-like protein
85	 31.77	0	112738..112929	+	63	153936525	-	CLC_0136	-	iron-sulfur cluster-binding protein
86	 18.52	-2	113004..113138	+	44	153935054	-	CLC_0137	-	hypothetical protein
87	 24.86	0	113375..113551	-	58	153935868	-	CLC_0138	-	hypothetical protein
88	 19.33	-2	113629..114699	+	356	153935993	-	CLC_0139	-	putative diguanylate cyclase
89	 24.55	-1	114756..115484	+	242	153935494	-	CLC_0140	-	mgtC family protein
90	 29.69	0	115774..117915	+	713	153935349	nrdD	CLC_0141	-	anaerobic ribonucleoside triphosphate reductase
91	 25.19	0	117932..118447	+	171	153934804	nrdG	CLC_0142	-	anaerobic ribonucleoside-triphosphate reductase activating protein
92	 36.73	+1	118700..118846	-	48	153937254	-	CLC_0143	-	hypothetical protein
93	 19.70	-2	118984..119658	-	224	153936731	-	CLC_0144	-	hypothetical protein
94	 26.55	0	119660..119998	-	112	153936562	-	CLC_0145	-	PadR family transcriptional regulator
95	 25.35	0	120119..120757	-	212	153937324	-	CLC_0146	-	putative zinc-dependent hydrolase
96	 30.25	0	121199..124315	+	1038	153934659	ileS	CLC_0147	-	isoleucyl-tRNA synthetase
97	 27.33	0	124466..125464	+	332	153935392	-	CLC_0148	-	LacI family transcription regulator
98	 23.86	-1	125680..129732	+	1350	153937141	-	CLC_0149	-	hypothetical protein
99	 27.90	0	129807..130874	+	355	153936480	-	CLC_0150	-	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
100	 28.76	0	131210..132499	+	429	153937649	-	CLC_0151	-	hypothetical protein
28.84	MEAN

4.00	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.