IslandPath Analysis: Campylobacter jejuni subsp. jejuni 81116



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.51   STD DEV: 3.72
Campylobacter jejuni subsp. jejuni 81116, complete genome - 1..1628115
1626 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.76	0	1..1323	+	440	157414323	dnaA	C8J_0001	-	chromosomal replication initiation protein
2	 25.66	-1	1483..2550	+	355	157414324	dnaN	C8J_0002	-	DNA polymerase III subunit beta
3	 33.20	0	2579..4888	+	769	157414325	gyrB	C8J_0003	-	DNA gyrase subunit B
4	 32.16	0	4914..5255	-	113	157414326	-	C8J_0004	-	putative periplasmic protein
5	 32.85	0	5258..6496	-	412	157414327	-	C8J_0005	-	hypothetical protein
6	 32.03	0	6706..8007	+	433	157414328	-	C8J_0006	-	Na+/H+ antiporter family protein
7	 34.96	+1	8142..12632	+	1496	157414329	gltB	C8J_0007	-	glutamate synthase, large subunit
8	 34.58	+1	12643..14088	+	481	157414330	gltD	C8J_0008	-	glutamate synthase subunit beta
9	 32.29	0	14089..14664	-	191	157414331	rnhB	C8J_0009	-	ribonuclease HII
10	 27.92	0	14697..14936	-	79	157414332	-	C8J_0010	-	competence protein ComEA
11	 36.27	+1	15001..15648	-	215	157414333	-	C8J_0011	-	rubrerythrin
12	 37.87	+1	15808..17484	+	558	157414334	ilvD	C8J_0012	-	dihydroxy-acid dehydratase
13	 34.48	+1	17496..18020	-	174	157414335	-	C8J_0013	-	putative integral membrane protein
14	 32.44	0	18112..19338	-	408	157414336	-	C8J_0014	-	hypothetical protein
15	 34.52	+1	19415..20089	+	224	157414337	-	C8J_0015	-	putative transcriptional regulatory protein
16	 34.18	0	20110..21636	-	508	157414338	-	C8J_0016	-	disulfide bond formation protein, DsbB family
17	 31.55	0	21648..21815	-	55	157414339	-	C8J_0017	-	hypothetical protein
18	 28.22	0	21921..23699	-	592	157414340	-	C8J_0018	-	MCP domain-containing signal transducer
19	 31.91	0	23689..24603	-	304	157414341	-	C8J_0019	-	cytochrome C551 peroxidase
20	 32.06	0	24699..25565	-	288	157414342	-	C8J_0020	-	fumarylacetoacetate hydrolase family protein
21	 28.96	0	25677..26522	-	281	157414343	-	C8J_0021	-	putative ribosomal pseudouridine synthase
22	 34.01	0	26657..27985	+	442	157414344	purB	C8J_0022	-	adenylosuccinate lyase
23	 33.54	0	28001..30370	+	789	157414345	nrdA	C8J_0023	-	ribonucleotide-diphosphate reductase subunit alpha
24	 31.31	0	30409..31794	-	461	157414346	-	C8J_0024	-	sodium/dicarboxylate symporter
25	 33.97	0	31914..32537	-	207	157414347	-	C8J_0025	-	FAD-dependent thymidylate synthase
26	 34.74	+1	32656..34287	+	543	157414348	pyrG	C8J_0026	-	CTP synthetase
27	 29.39	0	34274..35845	+	523	157414349	recJ	C8J_0027	-	single-stranded-DNA-specific exonuclease RecJ
28	 35.44	+1	35982..36977	+	331	157414350	ansA	C8J_0028	-	L-asparaginase
29	 34.96	+1	43640..45610	+	656	157414351	-	C8J_0029	-	hypothetical protein
30	 33.00	0	45651..47720	+	689	157414352	-	C8J_0030	-	hypothetical protein
31	 25.30	-1	47764..48348	+	194	157414353	-	C8J_0031	-	hypothetical protein
32	 30.04	0	48341..51046	+	901	157414354	-	C8J_0032	-	hypothetical protein
33	 37.34	+1	51081..52751	-	556	157414355	-	C8J_0033	-	hypothetical protein
34	 29.47	0	52981..56685	+	1234	157414356	-	C8J_0034	-	type II restriction-modification enzyme
35	 21.63	-2	56687..59428	+	913	157414357	-	C8J_0035	-	hypothetical protein
36	 21.08	-2	59450..61147	+	565	157414358	-	C8J_0036	-	hypothetical protein
37	 32.76	0	61177..61878	-	233	157414359	-	C8J_0037	-	hypothetical protein
38	 35.33	+1	61875..63077	-	400	157414360	-	C8J_0038	-	Bcr/CflA subfamily drug resistance transporter
39	 31.11	0	63180..64529	+	449	157414361	-	C8J_0039	-	hypothetical protein
40	 36.30	+1	64553..65596	-	347	157414362	-	C8J_0040	-	cytochrome c family protein
41	 25.00	-1	65774..66421	-	215	157414363	-	C8J_0041	-	hypothetical protein
42	 37.37	+1	66421..68229	-	602	157414364	typA	C8J_0042	-	GTP-binding protein TypA
43	 20.99	-2	68364..68687	+	107	157414365	-	C8J_0043	-	hypothetical protein
44	 26.46	-1	68708..70525	+	605	157414366	-	C8J_0044	-	hypothetical protein
45	 36.84	+1	70579..71463	+	294	157414367	flgD	C8J_0045	-	flagellar basal body rod modification protein
46	 34.07	0	71467..73104	+	545	157414368	flgE	C8J_0046	-	flagellar hook protein
47	 25.21	-1	73108..74979	-	623	157414369	-	C8J_0047	-	hypothetical protein
48	 28.19	0	74980..75699	-	239	157414370	-	C8J_0048	-	hypothetical protein
49	 33.14	0	77651..78667	-	338	157414371	trmU	C8J_0050	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
50	 30.69	0	78667..79272	-	201	157414372	-	C8J_0051	-	lysine decarboxylase family protein
51	 32.86	0	79341..80183	-	280	157414373	fliY	C8J_0052	-	flagellar motor switch protein FliY
52	 34.07	0	80180..81259	-	359	157414374	fliM	C8J_0053	-	flagellar motor switch protein FliM
53	 32.61	0	81259..81951	-	230	157414375	fliA	C8J_0054	-	flagellar biosynthesis sigma factor
54	 26.89	0	81932..82288	-	118	157414376	-	C8J_0055	-	hypothetical protein
55	 31.03	0	82307..83173	-	288	157414377	-	C8J_0056	-	ATPase, ParA family
56	 30.45	0	83166..84620	-	484	157414378	flhF	C8J_0057	-	flagellar biosynthesis regulator FlhF
57	 30.59	0	84630..85103	-	157	157414379	folK	C8J_0058	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
58	 35.21	+1	85106..85585	-	159	157414380	aroQ	C8J_0059	-	3-dehydroquinate dehydratase
59	 29.84	0	85676..86905	+	409	157414381	-	C8J_0060	-	chlorohydrolase
60	 32.66	0	86893..87789	+	298	157414382	sppA	C8J_0061	-	signal peptide peptidase SppA, 36K type
61	 34.11	0	87868..88899	+	343	157414383	-	C8J_0062	-	hypothetical protein
62	 23.12	-1	88896..89081	-	61	157414384	-	C8J_0063	-	hypothetical protein
63	 27.59	0	89142..89750	-	202	157414385	-	C8J_0064	-	hypothetical protein
64	 26.23	-1	89753..90400	-	215	157414386	-	C8J_0065	-	hypothetical protein
65	 31.66	0	90579..91235	-	218	157414387	-	C8J_0066	-	hypothetical protein
66	 35.07	+1	91228..92667	-	479	157414388	-	C8J_0067	-	iron-sulfur cluster binding protein
67	 32.11	0	92664..93401	-	245	157414389	-	C8J_0068	-	hypothetical protein
68	 34.76	+1	93524..95206	-	560	157414390	lctP	C8J_0069	-	L-lactate permease
69	 31.58	0	95378..95947	-	189	157414391	cdtC	C8J_0070	-	cytolethal distending toxin
70	 36.84	+1	95958..96755	-	265	157414392	cdtB	C8J_0071	-	cytolethal distending toxin, type I deoxyribonuclease-like protein
71	 34.32	+1	96752..97558	-	268	157414393	cdtA	C8J_0072	-	cytolethal distending toxin
72	 21.37	-2	97672..97905	+	77	157414394	-	C8J_0073	-	hypothetical protein
73	 34.80	+1	97906..99468	+	520	157414395	cydA	C8J_0074	-	cytochrome d ubiquinol oxidase, subunit I
74	 32.62	0	99468..100592	+	374	157414396	cydB	C8J_0075	-	cytochrome d ubiquinol oxidase, subunit II
75	 23.81	-1	100602..100706	+	34	157414397	-	C8J_0076	-	hypothetical protein
76	 26.58	-1	100786..101481	-	231	157414398	-	C8J_0077	-	putative amino acid recemase
77	 29.45	0	101601..102296	-	231	157414399	ung	C8J_0078	-	uracil-DNA glycosylase
78	 33.05	0	102567..103973	+	468	157414400	aspA	C8J_0079	-	aspartate ammonia-lyase
79	 37.07	+1	103990..105327	+	445	157414401	-	C8J_0081	-	anaerobic C4-dicarboxylate transporter
80	 28.34	0	105435..106796	+	453	157414402	-	C8J_0082	-	putative lipoprotein
81	 27.64	0	106806..107174	+	122	157414403	-	C8J_0083	-	putative lipoprotein
82	 34.94	+1	107198..107821	+	207	157414404	-	C8J_0084	-	putative lipoprotein
83	 30.87	0	107903..109240	+	445	157414405	-	C8J_0085	-	putative periplasmic protein
84	 32.83	0	109250..110452	+	400	157414406	-	C8J_0086	-	putative periplasmic protein
85	 35.28	+1	110611..110919	+	102	157414407	rplU	C8J_0087	-	50S ribosomal protein L21
86	 36.86	+1	110930..111184	+	84	157414408	rpmA	C8J_0088	-	50S ribosomal protein L27
87	 35.36	+1	111293..112330	+	345	157414409	-	C8J_0089	-	GTPase ObgE
88	 31.88	0	112453..113208	+	251	157414410	proB	C8J_0090	-	gamma-glutamyl kinase
89	 32.14	0	113282..114199	+	305	157414411	fmt	C8J_0091	-	methionyl-tRNA formyltransferase
90	 28.62	0	114180..114815	+	211	157414412	-	C8J_0092	-	biotin--protein ligase
91	 30.79	0	114812..115597	+	261	157414413	-	C8J_0093	-	chromosome partitioning protein, ParA family
92	 26.40	-1	115603..116439	+	278	157414414	-	C8J_0094	-	chromosome partitioning protein, ParB family
93	 28.64	0	116500..116925	+	141	157414415	atpF'	C8J_0095	-	F0F1 ATP synthase subunit B'
94	 25.73	-1	116936..117448	+	170	157414416	atpF	C8J_0096	-	F0F1 ATP synthase subunit B
95	 21.65	-2	117451..117972	+	173	157414417	atpH	C8J_0097	-	F0F1 ATP synthase subunit delta
96	 35.19	+1	117986..119491	+	501	157414418	atpA	C8J_0098	-	F0F1 ATP synthase subunit alpha
97	 28.47	0	119500..120384	+	294	157414419	atpG	C8J_0099	-	F0F1 ATP synthase subunit gamma
98	 35.41	+1	120409..121806	+	465	157414420	atpD	C8J_0100	-	F0F1 ATP synthase subunit beta
99	 34.87	+1	121810..122199	+	129	157414421	atpC	C8J_0101	-	F0F1 ATP synthase subunit epsilon
100	 29.91	0	122199..122753	+	184	157414422	exbB3	C8J_0102	-	ExbB/TolQ family transport protein
30.51	MEAN

3.72	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.