IslandPath Analysis: Rhodopseudomonas palustris BisB18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.03   STD DEV: 3.87
Rhodopseudomonas palustris BisB18, complete genome - 1..5513844
4886 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.03	0	758..2179	+	473	90421529	dnaA	RPC_0001	-	chromosomal replication initiation protein
2	 65.77	0	2475..3593	+	372	90421530	-	RPC_0002	-	DNA polymerase III subunit beta
3	 69.74	+1	3768..4907	+	379	90421531	recF	RPC_0003	-	recombination protein F
4	 65.70	0	5106..6350	+	414	90421532	-	RPC_0004	-	hypothetical protein
5	 64.91	0	6602..9043	+	813	90421533	gyrB	RPC_0005	-	DNA gyrase subunit B
6	 62.16	0	9075..9695	-	206	90421534	-	RPC_0006	-	hypothetical protein
7	 62.94	0	9960..10469	-	169	90421535	-	RPC_0007	-	AsnC family transcriptional regulator
8	 65.56	0	11386..11565	-	59	90421536	-	RPC_0008	-	cytochrome oxidase maturation protein, cbb3-type
9	 67.16	0	11556..13763	-	735	90421537	-	RPC_0009	-	copper-translocating P-type ATPase
10	 66.87	0	13773..14273	-	166	90421538	-	RPC_0010	-	FixH
11	 62.96	0	14295..15752	-	485	90421539	-	RPC_0011	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
12	 65.53	0	15869..16750	-	293	90421540	-	RPC_0012	-	cytochrome c oxidase, cbb3-type, subunit III
13	 57.58	-1	16757..16921	-	54	90421541	-	RPC_0013	-	Cbb3-type cytochrome oxidase component
14	 61.65	0	16931..17668	-	245	90421542	-	RPC_0014	-	cytochrome c oxidase, cbb3-type, subunit II
15	 62.73	0	17680..19332	-	550	90421543	-	RPC_0015	-	cytochrome c oxidase, cbb3-type, subunit I
16	 68.07	0	19586..20509	-	307	90421544	-	RPC_0016	-	2-dehydropantoate 2-reductase
17	 65.31	0	20585..21322	-	245	90421545	-	RPC_0017	-	short-chain dehydrogenase/reductase SDR
18	 60.46	-1	21556..22167	-	203	90421546	-	RPC_0018	-	DSBA oxidoreductase
19	 66.37	0	22380..23048	+	222	90421547	-	RPC_0019	-	glutathione S-transferase-like
20	 63.99	0	23282..24178	-	298	90421548	-	RPC_0020	-	short chain dehydrogenase
21	 68.65	0	24297..26057	-	586	90421549	-	RPC_0021	-	gamma-glutamyltransferase
22	 66.24	0	26145..27536	+	463	90421550	-	RPC_0022	-	major facilitator transporter
23	 67.04	0	27674..29266	-	530	90421551	purH	RPC_0023	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
24	 68.92	+1	29426..31204	-	592	90421552	-	RPC_0024	-	heparinase II/III-like
25	 70.73	+1	31482..32834	-	450	90421553	-	RPC_0025	-	Fmu (Sun)
26	 72.65	+1	33124..33357	+	77	90421554	-	RPC_0026	-	hypothetical protein
27	 54.68	-2	33376..33642	-	88	90421555	-	RPC_0027	-	addiction module toxin, Txe/YoeB
28	 55.17	-2	33653..33913	-	86	90421556	-	RPC_0028	-	prevent-host-death protein
29	 69.88	+1	34034..34624	+	196	90421557	-	RPC_0029	-	nuclease (SNase-like)
30	 65.69	0	34627..36375	-	582	90421558	-	RPC_0030	-	alkaline phosphatase
31	 64.28	0	36651..37988	-	445	90421559	-	RPC_0031	-	argininosuccinate synthase
32	 67.56	0	38093..38875	-	260	90421560	-	RPC_0032	-	phosphoesterase, PA-phosphatase related
33	 67.72	0	39025..39498	-	157	90421561	-	RPC_0033	-	hypothetical protein
34	 68.33	0	39498..40097	-	199	90421562	-	RPC_0034	-	metal dependent phosphohydrolase
35	 64.33	0	40102..41301	-	399	90421563	-	RPC_0035	-	hypothetical protein
36	 67.78	0	41502..42131	-	209	90421564	-	RPC_0036	-	hypothetical protein
37	 64.92	0	42455..43429	+	324	90421565	-	RPC_0037	-	zinc-binding alcohol dehydrogenase
38	 68.76	0	43530..44771	+	413	90421566	-	RPC_0038	-	amine oxidase
39	 65.01	0	44907..45449	+	180	90421567	-	RPC_0039	-	GCN5-related N-acetyltransferase
40	 61.36	0	45530..46075	+	181	90421568	-	RPC_0040	-	inorganic pyrophosphatase
41	 66.73	0	46115..47596	+	493	90421569	-	RPC_0041	-	hypothetical protein
42	 64.56	0	47972..49915	-	647	90421570	-	RPC_0042	-	acetyl-CoA synthetase
43	 69.24	+1	50514..51212	-	232	90421571	-	RPC_0043	-	hypothetical protein
44	 61.84	0	51255..51668	-	137	90421572	-	RPC_0044	-	hypothetical protein
45	 69.09	+1	51672..52661	-	329	90421573	gpsA	RPC_0045	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
46	 69.72	+1	52957..54102	-	381	90421574	-	RPC_0046	-	O-sialoglycoprotein endopeptidase
47	 68.14	0	54230..54976	+	248	90421575	-	RPC_0047	-	uroporphyrinogen III synthase HEM4
48	 72.20	+1	55033..56424	+	463	90421576	-	RPC_0048	-	hypothetical protein
49	 71.17	+1	56432..58117	+	561	90421577	-	RPC_0049	-	HemY-like
50	 66.67	0	58569..58793	+	74	90421578	-	RPC_0050	-	hypothetical protein
51	 68.68	0	59017..60405	+	462	90421579	-	RPC_0051	-	cytochrome P450
52	 65.84	0	60413..61858	+	481	90421580	-	RPC_0052	-	adenylate/guanylate cyclase
53	 59.48	-1	61914..62219	-	101	90421581	-	RPC_0053	-	hypothetical protein
54	 63.94	0	62585..63097	+	170	90421582	-	RPC_0054	-	hypothetical protein
55	 66.15	0	63376..64155	+	259	90421583	-	RPC_0055	-	short-chain dehydrogenase/reductase SDR
56	 68.84	0	64314..65096	+	260	90421584	-	RPC_0056	-	glutamine amidotransferase
57	 55.67	-2	65569..65859	+	96	90421585	-	RPC_0057	-	protein of unknown function YGGT
58	 70.06	+1	65902..66225	+	107	90421586	-	RPC_0058	-	hypothetical protein
59	 68.02	0	66341..67228	+	295	90421587	-	RPC_0059	-	methenyltetrahydrofolate cyclohydrolase
60	 67.05	0	67811..68326	+	171	90421588	-	RPC_0060	-	ErfK/YbiS/YcfS/YnhG
61	 66.52	0	68518..70542	+	674	90421589	-	RPC_0061	-	methyl-accepting chemotaxis sensory transducer
62	 66.96	0	70622..71644	+	340	90421590	-	RPC_0062	-	hypothetical protein
63	 66.67	0	71641..72627	+	328	90421591	-	RPC_0063	-	sulfate adenylyltransferase subunit 2
64	 69.69	+1	72627..74480	+	617	90421592	-	RPC_0064	-	Sulfate adenylyltransferase, large subunit
65	 74.60	+2	74563..76416	-	617	90421593	-	RPC_0065	-	OmpA/MotB
66	 72.48	+1	76623..76880	-	85	90421594	-	RPC_0066	-	hypothetical protein
67	 61.59	0	76880..77371	-	163	90421595	-	RPC_0067	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
68	 61.30	0	77632..78414	-	260	90421596	sdhB	RPC_0068	-	succinate dehydrogenase iron-sulfur subunit
69	 47.41	-2	78418..78957	-	179	90421597	-	RPC_0069	-	hypothetical protein
70	 66.01	0	78963..80786	-	607	90421598	sdhA	RPC_0070	-	succinate dehydrogenase flavoprotein subunit
71	 60.76	-1	80790..81212	-	140	90421599	-	RPC_0071	-	succinate dehydrogenase, cytochrome b subunit
72	 62.91	0	81209..81607	-	132	90421600	-	RPC_0072	-	succinate dehydrogenase, cytochrome b subunit
73	 65.35	0	81984..82973	+	329	90421601	-	RPC_0073	-	cation diffusion facilitator family transporter
74	 64.08	0	83053..84252	+	399	90421602	-	RPC_0074	-	putative branched chain amino acid periplasmic binding protein of ABC transporter
75	 65.30	0	84336..84773	-	145	90421603	-	RPC_0075	-	hypothetical protein
76	 63.35	0	84752..85234	-	160	90421604	-	RPC_0076	-	flavodoxin FldA
77	 65.14	0	86477..86869	-	130	90421605	-	RPC_0077	-	membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
78	 67.44	0	86951..87991	-	346	90421606	-	RPC_0078	-	hypothetical protein
79	 68.49	0	88026..90491	-	821	90421607	-	RPC_0079	-	hypothetical protein
80	 69.11	+1	90488..91141	-	217	90421608	-	RPC_0080	-	ABC transporter related
81	 69.53	+1	91347..92603	+	418	90421609	-	RPC_0081	-	hypothetical protein
82	 59.67	-1	92978..93220	+	80	90421610	-	RPC_0082	-	hypothetical protein
83	 66.88	0	93491..93958	-	155	90421611	-	RPC_0083	-	hypothetical protein
84	 62.70	0	94303..96318	-	671	90421612	-	RPC_0084	-	TonB-dependent receptor, plug
85	 69.52	+1	96784..97833	+	349	90421613	-	RPC_0085	-	transport system permease protein
86	 72.41	+1	97830..98612	+	260	90421614	-	RPC_0086	-	ABC transporter related
87	 68.86	0	98624..99442	+	272	90421615	-	RPC_0087	-	periplasmic binding protein
88	 68.60	0	99734..100405	+	223	90421616	-	RPC_0088	-	hypothetical protein
89	 70.35	+1	100508..101728	+	406	90421617	-	RPC_0089	-	major facilitator transporter
90	 70.37	+1	101910..102044	-	44	90421618	-	RPC_0090	-	hypothetical protein
91	 65.39	0	102041..103057	-	338	90421619	-	RPC_0091	-	cytochrome d ubiquinol oxidase, subunit II
92	 65.11	0	103057..104466	-	469	90421620	-	RPC_0092	-	cytochrome bd ubiquinol oxidase, subunit I
93	 64.71	0	105246..105857	-	203	90421621	-	RPC_0093	-	RNA polymerase sigma factor
94	 67.75	0	106054..106794	-	246	90421622	-	RPC_0094	-	two component transcriptional regulator
95	 66.09	0	106791..108539	-	582	90421623	-	RPC_0095	-	response regulator receiver sensor signal transduction histidine kinase
96	 67.39	0	108509..110587	-	692	90421624	-	RPC_0096	-	periplasmic sensor signal transduction histidine kinase
97	 66.28	0	110786..112090	+	434	90421625	-	RPC_0097	-	extracellular solute-binding protein
98	 67.97	0	112119..113036	-	305	90421626	-	RPC_0098	-	anaerobic benzoate catabolism transcriptional regulator
99	 67.26	0	113163..114008	-	281	90421627	-	RPC_0099	-	carboxylesterase
100	 64.56	0	114221..114790	-	189	90421628	-	RPC_0100	-	glutathione-dependent formaldehyde-activating enzyme
65.03	MEAN

3.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.