IslandPath Analysis: Erwinia tasmaniensis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.04   STD DEV: 5.84
Erwinia tasmaniensis, complete genome - 1..3883467
3427 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.42	0	1..441	-	146	188532166	mioC	ETA_00010	-	Protein mioC, involved in modulation of initiation at oriC
2	 52.16	0	655..1116	-	153	188532167	asnC	ETA_00020	-	AsnC-family transcriptional regulator
3	 59.17	0	1234..3393	-	719	188532168	-	ETA_00030	-	Conserved hypothetical protein (DUF323)
4	 58.59	0	3457..4917	-	486	188532169	viaA	ETA_00040	-	Protein viaA (VWA-domain protein interacting with AAA ATPase)
5	 55.69	0	4914..6407	-	497	188532170	ravA	ETA_00050	-	Regulatory ATPase variant A
6	 57.46	0	6666..8534	+	622	188532171	kup	ETA_00060	-	Low affinity potassium transport system protein kup (Kup system potassium uptake protein)
7	 43.96	-1	8670..13910	-	1746	188532172	-	ETA_00070	-	hypothetical protein
8	 39.59	-2	14202..18806	-	1534	188532173	-	ETA_00080	-	hypothetical protein
9	 43.67	-1	18809..20134	-	441	188532174	-	ETA_00090	-	hypothetical protein
10	 57.82	0	20550..21431	-	293	188532175	budR	ETA_00100	-	HTH-type transcriptional regulator BudR (Bud operon transcriptional regulator)
11	 55.68	0	21536..22318	+	260	188532176	budA	ETA_00110	-	Acetolactate decarboxylase
12	 60.89	+1	22337..24016	+	559	188532177	budB	ETA_00120	-	Acetolactate synthase, catabolic
13	 54.40	0	24221..24652	+	143	188532178	rbsD	ETA_00130	-	D-ribose high-affinity transport system
14	 55.84	0	24660..26165	+	501	188532179	rbsA	ETA_00140	-	D-ribose high-affinity transport protein
15	 57.79	0	26168..27136	+	322	188532180	rbsC	ETA_00150	-	Ribose transport permease system protein
16	 57.37	0	27162..28043	+	293	188532181	rbsB	ETA_00160	-	D-ribose-binding periplasmic protein
17	 59.35	0	28105..29034	+	309	188532182	rbsK	ETA_00170	-	Ribokinase
18	 56.50	0	29046..30038	+	330	188532183	rbsR	ETA_00180	-	Transcriptional repressor for rbs operon (GalR/LacI family)
19	 55.01	0	30035..31432	-	465	188532184	mdtD	ETA_00190	-	Putative MFS family transport protein
20	 52.48	0	37163..37726	-	187	188532185	mobA	ETA_00200	-	Molybdopterin-guanine dinucleotide biosynthesis protein A
21	 46.67	-1	37777..38046	+	89	188532186	yihD	ETA_00210	-	Conserved hypothetical protein YihD
22	 50.65	0	38125..39117	+	330	188532187	yihE	ETA_00220	-	Conserved hypothetical protein YihE
23	 48.41	0	39167..39796	+	209	188532188	dsbA	ETA_00230	-	Thiol:disulfide interchange protein DsbA
24	 55.13	0	40199..42988	+	929	188532189	polA	ETA_00240	-	DNA polymerase I
25	 54.19	0	43473..44129	-	218	188532190	engB	ETA_00250	-	Probable GTP-binding protein EngB
26	 55.99	0	44660..45202	+	180	188532191	yihI	ETA_00260	-	Conserved hypothetical protein YihI
27	 52.84	0	45446..46819	+	457	188532192	hemN	ETA_00270	-	O2-independent coproporphyrinogen III oxidase
28	 58.23	0	46878..48287	-	469	188532193	ntrC	ETA_00280	-	Nitrogen assimilation regulatory protein
29	 56.00	0	48295..49344	-	349	188532194	ntrB	ETA_00290	-	Two-component nitrogen regulation protein
30	 54.89	0	49540..50949	-	469	188532195	glnA	ETA_00300	-	Glutamine synthetase
31	 54.17	0	51386..53209	+	607	188532196	typA	ETA_00310	-	GTP-binding protein typA/bipA (Tyrosine phosphorylated protein A)
32	 53.30	0	53460..54065	+	201	188532197	yihX	ETA_00320	-	Putative haloacid dehalogenase-like hydrolase
33	 54.18	0	54067..54939	+	290	188532198	-	ETA_00330	-	tRNA-processing ribonuclease BN
34	 56.85	0	54936..55373	+	145	188532199	dtd	ETA_00340	-	D-tyrosyl-tRNA (Tyr) deacylase
35	 58.38	0	55370..56371	+	333	188532200	-	ETA_00350	-	Putative acetyltransferase
36	 53.74	0	56379..57260	-	293	188532201	rluF	ETA_00360	-	Ribosomal large subunit pseudouridine synthase F
37	 58.32	0	57343..59067	-	574	188532202	yicH	ETA_00370	-	Conserved hypothetical protein YicH
38	 58.53	0	59148..60536	-	462	188532203	yicE	ETA_00380	-	Putative purine/xanthine transport protein
39	 61.38	+1	60781..62862	-	693	188532204	recG	ETA_00390	-	ATP-dependent DNA helicase
40	 55.46	0	62862..63557	-	231	188532205	spoU	ETA_00400	-	Putative tRNA/rRNA methyltransferase
41	 53.77	0	63654..65777	-	707	188532206	spoT	ETA_00410	-	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
42	 50.72	0	65797..66072	-	91	188532207	rpoZ	ETA_00420	-	DNA-directed RNA polymerase omega chain
43	 50.80	0	66129..66752	-	207	188532208	gmk	ETA_00430	-	Guanylate kinase
44	 55.75	0	67015..68700	+	561	188532209	-	ETA_00440	-	Putative NAD-dependent DNA ligase
45	 51.62	0	68697..69314	-	205	188532210	yicG	ETA_00450	-	Conserved hypothetical protein YicG
46	 42.02	-2	69779..70423	+	214	188532211	-	ETA_00460	-	Bacterial regulatory protein, LuxR
47	 55.43	0	70770..72131	-	453	188532212	-	ETA_00470	-	Putative MFS tranporter precursor
48	 48.97	0	72297..72635	-	112	188532213	phnA	ETA_00480	-	Probable phosphonoacetate hydrolase
49	 48.94	0	73332..73754	+	140	188532214	-	ETA_00490	-	Putative acetyltransferase
50	 49.41	0	73834..74679	-	281	188532215	-	ETA_00500	-	Probable transcriptional regulator
51	 43.00	-1	74698..75090	+	130	188532216	-	ETA_00510	-	hypothetical protein
52	 43.62	-1	76307..76588	+	93	188532217	-	ETA_00550	-	hypothetical protein
53	 33.47	-2	76701..77414	+	237	188532218	-	ETA_00560	-	hypothetical protein
54	 58.10	0	78312..79175	-	287	188532219	-	ETA_00580	-	Predicted uncharacterized stress-induced protein
55	 57.58	0	79322..79750	+	142	188532220	-	ETA_00590	-	hypothetical protein
56	 52.66	0	79790..80974	-	394	188532221	nupC2	ETA_00600	-	Nucleoside permease
57	 60.67	+1	81188..81904	+	238	188532222	rph	ETA_00610	-	Ribonuclease PH (tRNA nucleotidyltransferase)
58	 53.74	0	81961..82602	+	213	188532223	pyrE	ETA_00620	-	Orotate phosphoribosyltransferase (OPRTase)
59	 51.93	0	82676..83272	-	198	188532224	ttk	ETA_00630	-	Putative transcriptional regulator
60	 57.08	0	83386..83844	-	152	188532225	dut	ETA_00640	-	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase)
61	 57.12	0	83822..85036	-	404	188532226	dfp	ETA_00650	-	Flavoprotein affecting synthesis of DNA and pantothenate metabolism
62	 52.38	0	85232..85903	+	223	188532227	radC	ETA_00660	-	DNA repair protein RadC
63	 51.90	0	86200..86436	+	78	188532228	rpmB	ETA_00670	-	50S ribosomal protein L28
64	 42.26	-2	86453..86620	+	55	188532229	rpmG	ETA_00680	-	50S ribosomal subunit protein L33
65	 56.91	0	86727..87536	+	269	188532230	mutM	ETA_00690	-	Formamidopyrimidine-DNA glycosylase
66	 57.23	0	87546..88022	-	158	188532231	coaD	ETA_00700	-	Phosphopantetheine adenylyltransferase
67	 57.40	0	88019..88795	-	258	188532232	-	ETA_00710	-	Lipopolysaccharide core biosynthesis glycosyl transferase
68	 56.08	0	88796..90070	-	424	188532233	kdtA	ETA_00720	-	3-deoxy-D-manno-octulosonic-acid transferase
69	 46.58	-1	90163..90396	-	77	188532234	-	ETA_00730	-	hypothetical protein
70	 53.55	0	90421..91434	+	337	188532235	-	ETA_00740	-	Glycosyl transferase, family 9
71	 56.38	0	91431..92528	-	365	188532236	-	ETA_00750	-	Glycosyl transferase, group 1
72	 58.07	0	92532..93659	-	375	188532237	-	ETA_00760	-	Glycosyl transferase, group 1
73	 57.82	0	93656..94729	-	357	188532238	waaQ	ETA_00770	-	Putative heptosyl III transferase WaaQ (Glycosyl transferase, family 9)
74	 52.56	0	94891..95847	+	318	188532239	walW	ETA_00780	-	Lipopolysaccharide biosynthesis protein
75	 50.91	0	95849..96952	+	367	188532240	-	ETA_00790	-	Glycosyl transferase, family 9
76	 47.81	-1	96965..97945	-	326	188532241	-	ETA_00800	-	Predicted glycosyl transferase, family 2
77	 45.78	-1	97939..99183	-	414	188532242	waaL	ETA_00810	-	Lipid A core, surface polymer ligase WaaL
78	 48.93	0	99197..100369	-	390	188532243	-	ETA_00820	-	Glycosyl transferase, group 1
79	 58.39	0	100366..101331	-	321	188532244	waaC	ETA_00830	-	Heptosyltransferase I WaaC
80	 57.21	0	101332..102378	-	348	188532245	waaF	ETA_00840	-	ADP-heptose--lps heptosyltransferase II
81	 51.88	0	102393..103325	-	310	188532246	waaD	ETA_00850	-	ADP-L-glycero-D-manno-heptose-6-epimerase
82	 57.02	0	103499..104431	-	310	188532247	yigQ	ETA_00860	-	Putative periplasmic protein of unknown function
83	 57.65	0	104432..105739	-	435	188532248	-	ETA_00870	-	Putative exported peptidase
84	 51.39	0	106091..106522	+	143	188532249	-	ETA_00880	-	hypothetical protein
85	 52.38	0	106563..106814	+	83	188532250	grxC	ETA_00890	-	Glutaredoxin 3
86	 51.95	0	106900..107361	+	153	188532251	secB	ETA_00900	-	Protein-export protein SecB
87	 56.27	0	107361..108380	+	339	188532252	gpsA	ETA_00910	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
88	 55.47	0	108446..109267	+	273	188532253	cysE	ETA_00920	-	Serine acetyltransferase
89	 55.27	0	109382..109855	-	157	188532254	cspR	ETA_00930	-	rRNA methyltransferase CspR (SpoU class)
90	 56.67	0	109894..111273	-	459	188532255	cpxA	ETA_00940	-	Sensory kinase in two-component regulatory system with CpxR
91	 52.99	0	111270..111971	-	233	188532256	cpxR	ETA_00950	-	Two-component response regulator
92	 52.16	0	112124..112633	+	169	188532257	cpxP	ETA_00960	-	Periplasmic repressor of cpx regulon by interaction with CpxA
93	 56.15	0	112760..113662	+	300	188532258	fieF	ETA_00970	-	Cation-efflux pump FieF
94	 52.86	0	113871..114833	+	320	188532259	pfkA	ETA_00980	-	6-phosphofructokinase isozyme I
95	 52.12	0	114978..115967	+	329	188532260	sbp	ETA_00990	-	Periplasmic sulphate binding protein
96	 51.25	0	116152..116910	+	252	188532261	cdh	ETA_01000	-	CDP-diacylglycerol pyrophosphatase
97	 53.93	0	116982..117986	-	334	188532262	rbn	ETA_01010	-	Predicted membrane protein
98	 59.86	0	118160..119011	-	283	188532263	pab	ETA_01020	-	Putative antibiotic biosynthesis protein
99	 58.93	0	119111..120571	-	486	188532264	-	ETA_01030	-	Putative aminotransferase
100	 53.26	0	120703..121284	+	193	188532265	-	ETA_01040	-	Lysine exporter protein (LYSE/YGGA)
54.04	MEAN

5.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.