IslandPath Analysis: Brucella melitensis biovar Abortus 2308



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.35   STD DEV: 3.92
Brucella melitensis biovar Abortus 2308 chromosome II, complete sequence - 1..1156948
1034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.02	0	155..1348	+	397	83268958	repC	BAB2_0001	-	replication protein C
2	 52.27	-1	1551..1814	+	87	83268959	-	BAB2_0002	-	hypothetical protein
3	 51.75	-1	1963..2076	+	37	83268960	-	BAB2_0003	-	hypothetical protein
4	 61.78	+1	2092..3033	+	313	83268961	-	BAB2_0004	-	ribokinase:carbohydrate kinase, PfkB
5	 56.36	0	3110..4108	-	332	83268962	-	BAB2_0005	-	inosine/uridine-preferring nucleoside hydrolase
6	 61.94	+1	4907..5986	-	359	83268963	-	BAB2_0007	-	inner-membrane translocator
7	 62.53	+1	6048..7619	-	523	83268964	-	BAB2_0008	-	ABC transporter ATPase
8	 55.92	0	7622..8728	-	368	83268965	-	BAB2_0009	-	adenine nucleotide translocator 1:basic membrane lipoprotein
9	 58.13	0	8972..9580	+	202	83268966	-	BAB2_0010	-	hypothetical protein
10	 62.24	+1	9552..10184	-	210	83268967	-	BAB2_0011	-	enterobactin synthetase component D
11	 61.65	+1	10267..11043	-	258	83268968	-	BAB2_0012	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
12	 60.82	0	11043..11915	-	290	83268969	-	BAB2_0013	-	isochorismatase hydrolase family protein
13	 60.99	0	11967..13586	-	539	83268970	entE	BAB2_0014	-	enterobactin synthase subunit E
14	 61.48	+1	13693..14868	-	391	83268971	-	BAB2_0015	-	isochorismate synthase:anthranilate synthase component I and chorismate binding protein
15	 58.79	0	14940..16349	+	469	83268972	-	BAB2_0016	-	condensation domain-containing protein
16	 57.92	0	16397..17185	-	262	83268973	-	BAB2_0017	-	molybdopterin oxidoreductase:twin-arginine translocation pathway signal
17	 55.93	0	17182..17991	-	269	83268974	-	BAB2_0018	-	nickel-dependent hydrogenase b-type cytochrome subunit
18	 51.48	-1	18052..18321	-	89	83268975	-	BAB2_0019	-	hypothetical protein
19	 60.00	0	18506..19030	+	174	83268976	-	BAB2_0020	-	sigma-70 region 2
20	 63.84	+1	19020..19655	+	211	83268977	-	BAB2_0021	-	extracytoplasmic function alternative sigma factor
21	 58.70	0	19701..20441	-	246	83268978	-	BAB2_0022	-	GntR family regulatory protein
22	 55.58	0	20559..21974	+	471	83268979	-	BAB2_0023	-	Leu/Ile/Val-binding family protein
23	 57.58	0	22016..23005	+	329	83268980	-	BAB2_0024	-	inner-membrane translocator
24	 61.26	0	23009..24229	+	406	83268981	-	BAB2_0025	-	inner-membrane translocator
25	 58.83	0	24229..24981	+	250	83268982	-	BAB2_0026	-	ABC transporter ATPase
26	 58.58	0	24981..25697	+	238	83268983	-	BAB2_0027	-	ABC transporter:AAA ATPase
27	 61.28	+1	25749..26231	+	160	83268984	-	BAB2_0028	-	glyoxalase/bleomycin resistance protein/dioxygenase
28	 59.08	0	26235..26972	+	245	83268985	-	BAB2_0029	-	Short-chain dehydrogenase/reductase SDR:glucose/ribitol dehydrogenase
29	 62.37	+1	27852..30041	+	729	83268986	-	BAB2_0031	-	dehydrogenase, E1 component:transketolase, central region:transketolase, C terminal
30	 61.93	+1	30060..31325	+	421	83268987	-	BAB2_0032	-	branched-chain alpha-keto acid dehydrogenase subunit E2
31	 61.70	+1	31426..32211	+	261	83268988	-	BAB2_0033	-	shikimate/quinate 5-dehydrogenase
32	 59.57	0	32695..32976	-	93	83268989	-	BAB2_0035	-	hypothetical protein
33	 59.31	0	33090..35807	+	905	83268990	-	BAB2_0036	-	H+ transporting ATPase
34	 64.90	+1	35905..36243	+	112	83268991	-	BAB2_0037	-	hypothetical protein
35	 61.27	+1	36374..36577	+	67	83268992	-	BAB2_0038	-	hypothetical protein
36	 59.27	0	36579..37295	+	238	83268993	-	BAB2_0039	-	MgtC/SapB transporter
37	 57.89	0	37370..38440	+	356	83268994	-	BAB2_0040	-	ATPase-like ATP-binding protein
38	 55.24	0	38437..39075	+	212	83268995	-	BAB2_0041	-	LuxR family regulatory protein
39	 54.27	0	39461..39823	-	120	83268996	-	BAB2_0042	-	response regulator receiver
40	 58.36	0	40142..41032	+	296	83268997	-	BAB2_0043	-	N-formylglutamate amidohydrolase
41	 61.13	0	41194..41970	+	258	83268998	-	BAB2_0044	-	inositol phosphatase/fructose-1,6-bisphosphatase
42	 61.14	0	42021..43016	-	331	83268999	-	BAB2_0045	-	alpha/beta fold hydrolase
43	 48.61	-2	43056..43271	-	71	83269000	-	BAB2_0046	-	hypothetical protein
44	 62.16	+1	43366..43764	-	132	83269001	-	BAB2_0047	-	antifreeze protein, type I
45	 48.10	-2	43816..44025	+	69	83269002	-	BAB2_0048	-	hypothetical protein
46	 54.76	0	43998..44249	+	83	83269003	-	BAB2_0049	-	hypothetical protein
47	 56.05	0	44328..44798	+	156	83269004	-	BAB2_0050	-	heat shock protein Hsp20
48	 59.90	0	44936..45985	-	349	83269005	-	BAB2_0051	-	low-specificity threonine aldolase
49	 55.79	0	46254..46538	-	94	83269006	-	BAB2_0052	-	hypothetical protein
50	 60.33	0	46628..51379	+	1583	83269007	gltB	BAB2_0053	-	glutamate synthase glutamate synthase amidotransferase subunit
51	 60.48	0	51461..52915	+	484	83269008	gltD	BAB2_0054	-	glutamate synthase subunit beta
52	 53.21	-1	52960..54363	-	467	83269009	-	BAB2_0055	-	amino acid transporter
53	 58.77	0	54581..55732	-	383	83269010	-	BAB2_0056	-	hypothetical protein
54	 57.42	0	55983..56501	-	172	83269011	-	BAB2_0057	-	outer membrane protein OprF
55	 58.40	0	56647..57735	-	362	83269012	-	BAB2_0058	-	type II secretion system protein E
56	 58.53	0	57716..58882	-	388	83269013	-	BAB2_0059	-	Glutelin:proline-rich region: conjugation TrbI-like protein
57	 57.59	0	58879..59748	-	289	83269014	-	BAB2_0060	-	Type IV secretion system CagX conjugation protein
58	 55.69	0	59745..60464	-	239	83269015	-	BAB2_0061	-	VirB8
59	 58.05	0	60467..60640	-	57	83269016	-	BAB2_0062	-	type IV secretion system protein VirB7 KO: K03202 type IV secretion system protein VirB7
60	 55.56	0	60804..61847	-	347	83269017	-	BAB2_0063	-	Beta and gamma crystallin:Pollen allergen Poa pIX/Phl pVI, C-terminal:Sodium:dicarboxylate symporter:TrbL/VirB6 plasmid conju...
61	 56.21	0	62031..62747	-	238	83269018	-	BAB2_0064	-	attachment mediating protein virB5 homolog KO: K03200 type IV secretion system protein VirB5
62	 55.57	0	62752..65247	-	831	83269019	-	BAB2_0065	-	shikimate kinase
63	 55.27	0	65247..65597	-	116	83269020	-	BAB2_0066	-	Type IV secretory pathway, VirB3-like
64	 56.29	0	65611..65928	-	105	83269021	-	BAB2_0067	-	type IV secretion system protein VirB2 KO: K03197 type IV secretion system protein VirB2
65	 56.49	0	66364..67080	-	238	83269022	-	BAB2_0068	-	SLT domain-containing protein
66	 59.32	0	67584..68822	-	412	83269023	-	BAB2_0069	-	peptidoglycan binding domain-containing protein
67	 56.94	0	69222..70115	+	297	83269024	galU	BAB2_0070	-	UTP-glucose-1-phosphate uridylyltransferase:nucleotidyl transferase
68	 60.23	0	70168..71706	-	512	83269025	-	BAB2_0071	-	hypothetical protein
69	 59.68	0	71847..72848	+	333	83269026	-	BAB2_0072	-	CBS domain-containing protein:cytochrome b5:sugar isomerase (SIS):KpsF/GutQ family protein
70	 57.48	0	72971..73438	-	155	83269027	-	BAB2_0073	-	nodulation protein nfed, c-terminal only
71	 58.97	0	73459..74445	-	328	83269028	-	BAB2_0074	-	Band 7 protein:stomatin
72	 58.07	0	74578..75636	-	352	83269029	hemH	BAB2_0075	-	ferrochelatase
73	 60.37	0	75774..76154	-	126	83269030	omp10	BAB2_0076	-	lipoprotein Omp10
74	 58.23	0	76296..77741	-	481	83269031	-	BAB2_0077	-	homospermidine synthase
75	 59.47	0	77853..78533	-	226	83269032	-	BAB2_0078	-	hypothetical protein
76	 59.23	0	78467..79636	-	389	83269033	-	BAB2_0079	-	para-aminobenzoate synthase component I
77	 56.90	0	79646..81508	-	620	83269034	pepF	BAB2_0080	-	peptidase M3:neutral zinc metallopeptidases, zinc-binding region
78	 59.56	0	81856..83346	+	496	83269035	-	BAB2_0081	-	response regulator receiver
79	 64.05	+1	83687..85600	+	637	83269036	-	BAB2_0082	-	ATP/GTP-binding motif-containing protein
80	 62.38	+1	85666..86271	-	201	83269037	-	BAB2_0083	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
81	 59.80	0	86463..87074	-	203	83269038	-	BAB2_0084	-	hypothetical protein
82	 56.78	0	87172..88122	+	316	83269039	-	BAB2_0085	-	rhodanese-like protein
83	 55.07	0	88157..88363	+	68	83269040	-	BAB2_0086	-	hypothetical protein
84	 56.48	0	88403..89158	+	251	83269041	modA	BAB2_0087	-	molybdenum ABC transporter periplasmic-binding protein
85	 59.97	0	89169..89855	+	228	83269042	modB	BAB2_0088	-	molybdate ABC transporter permease protein
86	 61.48	+1	89852..90931	+	359	83269043	-	BAB2_0089	-	ABC transporter ATPase
87	 56.05	0	91001..91678	+	225	83269044	-	BAB2_0090	-	GCN5-related N-acetyltransferase
88	 55.24	0	91665..91874	+	69	83269045	-	BAB2_0091	-	hypothetical protein
89	 42.75	-2	91926..92201	-	91	83269046	-	BAB2_0092	-	hypothetical protein
90	 59.51	0	92816..93919	-	367	83269047	-	BAB2_0094	-	Delayed-early response protein/equilibrative nucleoside transporter
91	 54.33	0	93919..94623	-	234	83269048	-	BAB2_0095	-	hypothetical protein
92	 59.73	0	94663..95556	-	297	83269049	-	BAB2_0096	-	transcriptional regulator LysR
93	 60.53	0	95560..96765	-	401	83269050	-	BAB2_0097	-	amidase
94	 60.23	0	97350..98483	+	377	83269051	-	BAB2_0098	-	Orn/DAP/Arg decarboxylase family protein
95	 59.74	0	98559..100277	-	572	83269052	-	BAB2_0099	-	lipopolysaccharide biosynthesis
96	 38.41	-2	100294..100431	-	45	83269053	-	BAB2_0100	-	hypothetical protein
97	 55.48	0	100403..101305	-	300	83269054	-	BAB2_0101	-	hypothetical protein
98	 57.06	0	102024..103178	-	384	83269055	-	BAB2_0104	-	hypothetical protein
99	 54.08	0	103350..104342	+	330	83269056	-	BAB2_0105	-	glycosyl transferase family protein
100	 56.18	0	104311..105636	+	441	83269057	-	BAB2_0106	-	hypothetical protein
57.35	MEAN

3.92	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.