IslandPath Analysis: Mycobacterium avium 104



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.90   STD DEV: 3.75
Mycobacterium avium 104, complete genome - 1..5475491
5120 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.60	0	33..1529	+	498	118466558	dnaA	MAV_0001	-	chromosomal replication initiation protein
2	 69.10	0	2150..3298	+	382	118465865	dnaN	MAV_0002	-	DNA polymerase III subunit beta
3	 71.24	0	3299..4456	+	385	118465169	recF	MAV_0003	-	recombination protein F
4	 74.36	+1	4453..4998	+	181	118464189	-	MAV_0004	-	hypothetical protein
5	 64.36	-1	5257..7290	+	677	118463778	gyrB	MAV_0005	-	DNA gyrase subunit B
6	 67.94	0	7302..9821	+	839	118462773	gyrA	MAV_0006	-	DNA gyrase subunit A
7	 73.03	+1	9924..10787	+	287	118462372	-	MAV_0007	-	hypothetical protein
8	 72.19	0	11157..11735	-	192	118466504	-	MAV_0009	-	transcriptional regulator, TetR family protein
9	 68.23	0	11932..13146	+	404	118465807	-	MAV_0011	-	cytochrome P450
10	 76.32	+1	13148..13582	-	144	118465230	-	MAV_0012	-	hypothetical protein
11	 67.04	0	13691..14221	+	176	118464521	-	MAV_0013	-	peptidyl-prolyl cis-trans isomerase B
12	 69.86	0	14233..14514	-	93	118465709	-	MAV_0014	-	hypothetical protein
13	 60.64	-2	14814..15095	-	93	118464987	-	MAV_0015	-	putative septation inhibitor protein
14	 72.45	0	15226..15969	+	247	118462237	-	MAV_0016	-	hypothetical protein
15	 68.85	0	16018..16704	+	228	118464054	-	MAV_0018	-	para-aminobenzoate synthase component II
16	 68.47	0	16682..18562	-	626	118466937	-	MAV_0017	-	serine/threonine protein kinase
17	 72.83	+1	18559..19824	-	421	118462951	-	MAV_0019	-	serine/threonine protein kinases Drp72
18	 69.91	0	19839..21317	-	492	118465786	-	MAV_0020	-	PbpA protein
19	 64.47	-1	21314..22723	-	469	118465232	-	MAV_0021	-	cell cycle protein, FtsW/RodA/SpoVE family protein
20	 71.53	0	22720..24219	-	499	118466385	-	MAV_0022	-	protein phosphatase 2C
21	 68.17	0	24284..24682	-	132	118466929	-	MAV_0023	-	FHA domain-containing protein
22	 71.00	0	24876..26513	-	545	118465219	-	MAV_0024	-	xyppx repeat-containing protein
23	 59.13	-2	27020..27457	+	145	118465816	-	MAV_0026	-	hypothetical protein
24	 62.63	-1	27478..27849	-	123	118464123	-	MAV_0027	-	hypothetical protein
25	 67.66	0	27880..28383	-	167	118463612	-	MAV_0028	-	hypothetical protein
26	 61.36	-2	28598..28861	+	87	118464159	-	MAV_0029	-	acyl carrier protein
27	 69.17	0	28858..30414	+	518	118462530	-	MAV_0030	-	acyl-CoA synthetase
28	 65.93	0	30569..32470	+	633	118463081	-	MAV_0031	-	hypothetical protein
29	 54.51	-2	32692..32946	+	84	118466465	-	MAV_0032	-	hypothetical protein
30	 64.86	-1	33419..34693	+	424	118466508	-	MAV_0033	-	transposase, Mutator family protein
31	 66.74	0	34806..36131	-	441	118463202	-	MAV_0034	-	transposase, Mutator family protein
32	 64.78	-1	36248..37522	-	424	118464090	-	MAV_0035	-	transposase, Mutator family protein
33	 70.44	0	37715..38959	-	414	118464665	-	MAV_0036	-	hypothetical protein
34	 60.00	-2	39014..39343	-	109	118465686	-	MAV_0037	-	hypothetical protein
35	 68.88	0	39330..40322	-	330	118466075	-	MAV_0038	-	hypothetical protein
36	 67.39	0	40327..41709	-	460	118466848	-	MAV_0039	-	putative acyl-CoA dehydrogenase
37	 72.90	+1	41803..42219	-	138	118462762	-	MAV_0040	-	transcription factor WhiB family protein
38	 67.81	0	42362..43150	+	262	118463481	-	MAV_0041	-	helix-turn-helix domain-containing protein
39	 72.10	0	43147..43974	+	275	118463920	-	MAV_0042	-	NLP/P60 family protein
40	 68.04	0	44023..44385	+	120	118465006	-	MAV_0043	-	hypothetical protein
41	 70.39	0	44501..45952	+	483	118462713	-	MAV_0044	-	hypothetical protein
42	 64.47	-1	46003..46320	+	105	118464594	-	MAV_0045	-	hypothetical protein
43	 64.96	-1	46395..46628	+	77	118463831	-	MAV_0046	-	hypothetical protein
44	 65.28	0	46662..46805	-	47	118465580	-	MAV_0047	-	hypothetical protein
45	 72.71	+1	46888..48576	+	562	118467122	-	MAV_0048	-	hypothetical protein
46	 67.28	0	48627..48950	+	107	118466858	-	MAV_0049	-	hypothetical protein
47	 75.71	+1	49093..49866	-	257	118466337	-	MAV_0050	-	hypothetical protein
48	 71.10	0	49924..51210	-	428	118464314	-	MAV_0051	-	transporter, major facilitator family protein
49	 69.14	0	51341..51946	+	201	118463947	-	MAV_0052	-	hypothetical protein
50	 75.73	+1	51962..52303	-	113	118462500	-	MAV_0053	-	hypothetical protein
51	 74.02	+1	52359..53459	-	366	118462540	-	MAV_0054	-	proline-rich 28 kDa antigen
52	 68.75	0	53575..56553	+	992	118467113	leuS	MAV_0055	-	leucyl-tRNA synthetase
53	 69.05	0	56560..57231	-	223	118466568	-	MAV_0056	-	short chain dehydrogenase
54	 70.83	0	57290..57793	-	167	118466014	-	MAV_0057	-	transcriptional regulator, MarR family protein
55	 65.73	0	57860..58606	-	248	118465112	-	MAV_0058	-	ABC transporter, ATP-binding protein
56	 69.12	0	58603..60399	-	598	118464237	-	MAV_0059	-	amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family protein
57	 68.29	0	60462..61202	-	246	118464635	-	MAV_0060	-	transcriptional regulator, GntR family protein
58	 68.97	0	61321..62100	-	259	118463089	-	MAV_0061	-	MmcI protein
59	 69.95	0	62117..63031	-	304	118463370	-	MAV_0062	-	hydrolase, alpha/beta fold family protein, putative
60	 68.23	0	63055..64269	-	404	118466485	-	MAV_0063	-	hypothetical protein
61	 71.14	0	64266..65069	-	267	118467333	-	MAV_0064	-	AP endonuclease, family protein 2
62	 67.18	0	65071..66240	-	389	118465350	-	MAV_0065	-	hypothetical protein
63	 69.86	0	66237..67364	-	375	118463701	-	MAV_0066	-	hypothetical protein
64	 66.12	0	67496..68602	-	368	118462233	-	MAV_0067	-	myo-inositol-1-phosphate synthase
65	 67.03	0	68662..69204	-	180	118462920	-	MAV_0068	-	transcriptional regulator, PadR family protein
66	 70.40	0	69351..70235	-	294	118466212	-	MAV_0069	-	hypothetical protein
67	 69.14	0	70351..70794	+	147	118463492	-	MAV_0070	-	hypothetical protein
68	 70.08	0	70791..73424	+	877	118467310	-	MAV_0071	-	transglycosylase
69	 68.74	0	73421..75058	+	545	118467279	-	MAV_0072	-	hypothetical protein
70	 70.56	0	75055..75696	+	213	118465152	-	MAV_0073	-	DJ-1/PfpI family protein
71	 62.54	-1	75831..76121	+	96	118465214	rpsF	MAV_0074	-	30S ribosomal protein S6
72	 62.75	-1	76788..77042	+	84	118466677	rpsR	MAV_0076	-	30S ribosomal protein S18
73	 69.06	0	77073..77531	+	152	118463189	rplI	MAV_0077	-	50S ribosomal protein L9
74	 58.41	-2	77682..78008	-	108	118465822	-	MAV_0078	-	hypothetical protein
75	 65.70	0	78063..80450	+	795	118463867	-	MAV_0079	-	replicative DNA helicase
76	 60.81	-2	80591..81478	-	295	118466020	-	MAV_0080	-	acyltransferase domain-containing protein
77	 67.16	0	81564..82373	-	269	118465316	-	MAV_0081	-	hypothetical protein
78	 69.12	0	82456..83025	+	189	118464894	-	MAV_0082	-	transcriptional regulator, TetR family protein
79	 65.10	-1	84930..87863	+	977	118465633	-	MAV_0084	-	putative transport protein MmpL4
80	 68.26	0	88122..89186	+	354	118465091	-	MAV_0085	-	hypothetical protein
81	 72.83	+1	89269..89544	+	91	118466758	-	MAV_0086	-	hypothetical protein
82	 68.29	0	89564..90304	+	246	118462980	-	MAV_0087	-	oxidoreductase, short chain dehydrogenase/reductase family protein
83	 68.08	0	90333..90968	-	211	118465215	-	MAV_0088	-	hypothetical protein
84	 70.08	0	91195..92631	+	478	118462287	-	MAV_0089	-	FAD binding domain-containing protein
85	 60.00	-2	92758..92877	+	39	118464391	-	MAV_0090	-	hypothetical protein
86	 66.67	0	93019..93696	+	225	118464475	-	MAV_0092	-	transcriptional regulator, Crp/Fnr family protein
87	 68.24	0	93693..94136	-	147	118465858	-	MAV_0091	-	glyoxalase family protein
88	 66.13	0	94157..95089	-	310	118467286	-	MAV_0093	-	alpha/beta hydrolase fold
89	 70.31	0	95180..96031	-	283	118466614	-	MAV_0094	-	transcriptional regulator, LysR family protein
90	 69.28	0	96201..97118	+	305	118465826	-	MAV_0095	-	hypothetical protein
91	 65.26	0	97888..98454	+	188	118464213	-	MAV_0097	-	phosphinothricin N-acetyltransferase
92	 65.51	0	98467..99156	-	229	118462494	-	MAV_0098	-	hypothetical protein
93	 64.01	-1	99147..99749	-	200	118462380	-	MAV_0099	-	hypothetical protein
94	 66.08	0	100937..101794	+	285	118467326	-	MAV_0101	-	ABC-transporter integral membrane protein
95	 70.01	0	101795..103351	+	518	118465369	-	MAV_0102	-	mce related protein
96	 64.06	-1	103354..104427	+	357	118463822	-	MAV_0103	-	virulence factor Mce family protein
97	 65.04	-1	104420..105466	+	348	118464334	-	MAV_0104	-	virulence factor Mce family protein
98	 66.22	0	105463..106578	+	371	118462753	-	MAV_0105	-	virulence factor Mce family protein
99	 70.40	0	106581..107813	+	410	118464466	-	MAV_0106	-	mce related protein
100	 67.71	0	107810..109060	+	416	118463870	-	MAV_0107	-	mce related protein
68.90	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.