IslandPath Analysis: Borrelia hermsii DAH



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.91   STD DEV: 3.52
Borrelia hermsii DAH, complete genome - 1..922307
819 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.01	0	1..524	+	173	187917884	-	BH0001	-	hypothetical protein
2	 34.83	+1	1046..2116	-	356	187917885	-	BH0002	-	hypothetical protein
3	 28.32	0	2079..3533	-	484	187917886	-	BH0003	-	hypothetical protein
4	 29.19	0	3680..5467	+	595	187917887	-	BH0004	-	phosphomannomutase
5	 32.77	0	5527..6585	-	352	187917888	-	BH0005	-	tryptophanyl-tRNA synthetase
6	 28.33	0	6588..7667	-	359	187917889	-	BH0006	-	hypothetical membrane spanning protein
7	 26.97	0	7771..8634	-	287	187917890	-	BH0007	-	hypothetical protein
8	 26.38	-1	8739..9515	+	258	187917891	-	BH0008	-	hypothetical membrane spanning protein
9	 26.61	0	9519..10514	+	331	187917892	-	BH0009	-	hypothetical protein
10	 27.25	0	10516..10893	+	125	187917893	-	BH0010	-	holo-[acyl-carrier protein] synthase
11	 30.27	0	10897..11745	+	282	187917894	-	BH0011	-	hypothetical protein
12	 27.24	0	11746..12483	+	245	187917895	-	BH0012	-	tRNA pseudouridine synthase A
13	 23.14	-1	12476..13054	+	192	187917896	-	BH0013	-	hypothetical protein
14	 27.47	0	13047..15023	+	658	187917897	-	BH0014	-	primosomal protein N'
15	 32.21	0	15020..15640	-	206	187917898	-	BH0015	-	uridine kinase
16	 25.38	-1	15633..16022	-	129	187917899	-	BH0016	-	rhodanese-related sulfurtransferases
17	 30.85	0	16151..17116	+	321	187917900	-	BH0017	-	hypothetical membrane spanning protein
18	 28.64	0	17113..18093	-	326	187917901	-	BH0018	-	ribosomal large subunit pseudouridine synthase D
19	 27.02	0	18094..18600	-	168	187917902	-	BH0019	-	hypothetical protein
20	 32.19	0	18608..20272	-	554	187917903	-	BH0020	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase
21	 32.66	0	20351..21397	-	348	187917904	-	BH0021	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
22	 34.47	+1	21363..22421	-	352	187917905	-	BH0022	-	Holliday junction DNA helicase RuvB
23	 30.46	0	22473..23063	-	196	187917906	-	BH0023	-	Holliday junction DNA helicase RuvA
24	 32.92	0	23676..24407	-	243	187917907	-	BH0025	-	hypothetical cytosolic protein
25	 29.91	0	24408..25313	-	301	187917908	-	BH0026	-	methenyltetrahydrofolate cyclohydrolase
26	 32.39	0	25475..26110	+	211	187917909	-	BH0027	-	hypothetical protein
27	 28.88	0	26117..27148	+	343	187917910	-	BH0028	-	hypothetical protein
28	 23.61	-1	27134..27565	-	143	187917911	-	BH0029	-	hypothetical protein
29	 23.43	-1	27555..28190	-	211	187917912	-	BH0030	-	hypothetical protein
30	 29.87	0	28193..29173	-	326	187917913	-	BH0031	-	signal peptidase I
31	 27.01	0	29357..30826	+	489	187917914	-	BH0032	-	hypothetical protein
32	 23.11	-1	30829..31278	+	149	187917915	-	BH0033	-	SsrA-binding protein
33	 36.53	+1	31415..31945	-	176	187917916	-	BH0034	-	hypothetical protein
34	 29.72	0	32023..33906	-	627	187917917	-	BH0035	-	hypothetical protein
35	 30.38	0	33906..35702	-	598	187917918	-	BH0036	-	hypothetical protein
36	 26.87	0	35689..36462	-	257	187917919	-	BH0037	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
37	 27.75	0	36467..37918	-	483	187917920	-	BH0038	-	hypothetical protein
38	 28.69	0	37972..39480	-	502	187917921	-	BH0039	-	hypothetical protein
39	 25.18	-1	39659..40504	+	281	187917922	-	BH0040	-	chemotaxis protein methyltransferase
40	 29.32	0	40552..41223	-	223	187917923	-	BH0042	-	hypothetical protein
41	 26.02	-1	41235..42260	-	341	187917924	-	BH0043	-	hypothetical protein
42	 25.32	-1	42257..42643	-	128	187917925	-	BH0044	-	hypothetical protein
43	 25.95	-1	42670..45135	-	821	187917926	-	BH0045	-	chromosome partition protein Smc
44	 28.57	0	45193..45738	+	181	187917927	-	BH0046	-	ribonuclease HII
45	 29.33	0	45747..46121	-	124	187917928	-	BH0047	-	hypothetical protein
46	 27.92	0	46875..47576	+	233	187917929	-	BH0050	-	hypothetical protein
47	 25.15	-1	47626..48309	+	227	187917930	-	BH0051	-	hypothetical protein
48	 28.36	0	48296..48979	-	227	187917931	-	BH0052	-	tRNA (guanosine-2'-O-)-methyltransferase
49	 29.76	0	49033..49704	+	223	187917932	-	BH0053	-	uracil-DNA glycosylase
50	 27.12	0	49744..50097	-	117	187917933	-	BH0054	-	hypothetical protein
51	 35.29	+1	50109..50873	-	254	187917934	-	BH0055	-	triosephosphate isomerase
52	 35.88	+1	50875..52053	-	392	187917935	-	BH0056	-	phosphoglycerate kinase
53	 36.41	+1	52082..53089	-	335	187917936	-	BH0057	-	glyceraldehyde 3-phosphate dehydrogenase
54	 28.70	0	53162..55147	-	661	187917937	-	BH0058	-	tetratricopeptide repeat family protein
55	 28.97	0	55144..55923	-	259	187917938	-	BH0059	-	magnesium and cobalt efflux protein CorC
56	 29.53	0	55920..56366	-	148	187917939	-	BH0060	-	hypothetical metal-binding protein
57	 31.07	0	56455..56808	-	117	187917940	-	BH0061	-	thioredoxin
58	 26.56	0	56882..57604	+	240	187917941	-	BH0062	-	hypothetical protein
59	 29.65	0	57639..58697	-	352	187917942	-	BH0063	-	serine/threonine protein kinase
60	 32.58	0	58726..59655	-	309	187917943	-	BH0064	-	methionyl-tRNA formyltransferase
61	 30.67	0	59652..60176	-	174	187917944	-	BH0065	-	peptide deformylase
62	 28.55	0	60178..60867	-	229	187917945	-	BH0066	-	hypothetical protein
63	 32.43	0	60864..62642	-	592	187917946	-	BH0067	-	Xaa-Pro aminopeptidase
64	 28.73	0	62762..63652	+	296	187917947	-	BH0068	-	hydrolase (HAD superfamily)
65	 30.99	0	63665..64903	+	412	187917948	-	BH0069	-	hypothetical protein
66	 29.91	0	64921..65388	+	155	187917949	-	BH0070	-	hypothetical membrane spanning protein
67	 25.17	-1	65410..66879	+	489	187917950	-	BH0071	-	hypothetical protein
68	 25.10	-1	66876..69194	+	772	187917951	-	BH0072	-	hypothetical protein
69	 20.53	-2	69191..69760	+	189	187917952	-	BH0073	-	hypothetical protein
70	 30.70	0	69776..70837	+	353	187917953	-	BH0074	-	bacterial peptide chain release factor 2
71	 25.89	-1	70819..72228	+	469	187917954	-	BH0075	-	hypothetical protein
72	 27.72	0	72273..73127	+	284	187917955	-	BH0076	-	cell division protein FtsY
73	 22.98	-1	73124..74176	+	350	187917956	-	BH0077	-	hypothetical protein
74	 25.99	-1	74157..75395	+	412	187917957	-	BH0078	-	cell division protein FtsX
75	 27.61	0	75410..76090	+	226	187917958	-	BH0080	-	transporter
76	 24.30	-1	76087..77337	+	416	187917959	-	BH0081	-	lipoprotein releasing system transmembrane protein LolE
77	 28.66	0	77372..78655	-	427	187917960	-	BH0082	-	hypothetical protein
78	 28.93	0	78648..78965	-	105	187917961	-	BH0083	-	hypothetical protein
79	 27.97	0	79170..80438	+	422	187917962	-	BH0084	-	cysteine desulfhydrase
80	 24.94	-1	80608..81012	+	134	187917963	-	BH0085	-	NifU-like protein
81	 31.83	0	81034..82563	+	509	187917964	-	BH0086	-	magnesium chelatase subunit ChlI-related ATPase
82	 31.97	0	82586..83536	-	316	187917965	-	BH0087	-	L-lactate dehydrogenase
83	 33.33	0	83726..85393	-	555	187917966	-	BH0088	-	GTP-binding protein LepA
84	 28.06	0	85574..86578	-	334	187917967	-	BH0089	-	tetratricopeptide repeat family protein
85	 39.54	+2	86616..87050	-	144	187917968	-	BH0090	-	V-type sodium ATP synthase subunit K
86	 30.33	0	87065..88897	-	610	187917969	-	BH0091	-	V-type sodium ATP synthase subunit I
87	 32.21	0	88906..89526	-	206	187917970	-	BH0092	-	V-type sodium ATP synthase subunit D
88	 35.64	+1	89505..90806	-	433	187917971	-	BH0093	-	V-type sodium ATP synthase subunit B
89	 36.26	+1	90807..92546	-	579	187917972	-	BH0094	-	V-type sodium ATP synthase subunit A
90	 27.66	0	92558..93103	-	181	187917973	-	BH0095	-	hypothetical protein
91	 29.65	0	93114..93710	-	198	187917974	-	BH0096	-	V-type sodium ATP synthase subunit E, putative
92	 32.04	0	93834..94220	-	128	187917975	-	BH0097	-	hypothetical protein
93	 27.66	0	94221..96581	-	786	187917976	-	BH0098	-	MutS2 protein
94	 28.66	0	96529..97470	-	313	187917977	-	BH0099	-	GTPase
95	 28.89	0	97467..98231	-	254	187917978	-	BH0100	-	glutamate racemase
96	 32.18	0	98375..99760	+	461	187917979	-	BH0101	-	asparaginyl-tRNA synthetase
97	 24.08	-1	99783..100355	+	190	187917980	-	BH0102	-	hypothetical protein
98	 28.14	0	100358..100954	-	198	187917981	-	BH0103	-	phosphoribosyltransferase
99	 32.99	0	101256..102710	-	484	187917982	-	BH0104	-	protease Do
100	 35.72	+1	102754..103506	-	250	187917983	-	BH0105	-	methionine aminopeptidase
29.91	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.