IslandPath Analysis: Pseudomonas aeruginosa UCBPP-PA14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.46   STD DEV: 4.33
Pseudomonas aeruginosa UCBPP-PA14, complete genome - 1..6537648
5892 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.59	0	483..2027	+	514	116053721	dnaA	PA14_00010	-	chromosomal replication initiation protein
2	 62.23	0	2056..3159	+	367	116053722	dnaN	PA14_00020	-	DNA polymerase III subunit beta
3	 61.17	-1	3169..4278	+	369	116053723	recF	PA14_00030	-	recombination protein F
4	 62.12	-1	4275..6695	+	806	116053724	gyrB	PA14_00050	-	DNA gyrase subunit B
5	 65.89	0	7018..7791	-	257	116053725	-	PA14_00060	-	putative acyltransferase
6	 63.31	0	7803..8339	-	178	116053726	-	PA14_00070	-	D,D-heptose 1,7-bisphosphate phosphatase
7	 66.73	0	8671..10377	+	568	116053727	-	PA14_00080	-	hypothetical protein
8	 67.25	0	10434..12488	-	684	116053728	glyS	PA14_00090	-	glycyl-tRNA synthetase subunit beta
9	 64.35	0	12488..13435	-	315	116053729	glyQ	PA14_00100	-	glycyl-tRNA synthetase subunit alpha
10	 64.13	0	13540..14091	+	183	116053730	tag	PA14_00110	-	DNA-3-methyladenine glycosidase I
11	 58.78	-1	14236..15123	+	295	116053731	-	PA14_00120	-	lipid A biosynthesis lauroyl acyltransferase
12	 58.80	-1	15208..15474	+	88	116053732	-	PA14_00130	-	hypothetical protein
13	 62.84	0	15621..16274	+	217	116053733	-	PA14_00140	-	hypothetical protein
14	 62.27	0	16336..16608	-	90	116053734	-	PA14_00150	-	hypothetical protein
15	 65.41	0	16923..17240	-	105	116053735	-	PA14_00160	-	TPR repeat-containing protein
16	 65.72	0	17389..18762	-	457	116053736	trkA	PA14_00170	-	potassium transporter peripheral membrane component
17	 70.42	0	18789..20093	-	434	116053737	-	PA14_00180	-	putative tRNA and rRNA cytosine-C5-methylases
18	 71.43	+1	20090..21034	-	314	116053738	fmt	PA14_00190	-	methionyl-tRNA formyltransferase
19	 61.93	-1	21088..21594	-	168	116053739	def	PA14_00200	-	peptide deformylase
20	 65.69	0	21733..22758	+	341	116053740	-	PA14_00210	-	lysin domain-containing protein
21	 73.09	+1	22893..23981	+	362	116053741	-	PA14_00230	-	putative Rossmann fold nucleotide-binding protein
22	 70.61	0	24022..24579	+	185	116053742	-	PA14_00240	-	hypothetical protein
23	 67.38	0	24589..25566	-	325	116053743	qor	PA14_00250	-	quinone oxidoreductase
24	 66.67	0	25757..26674	+	305	116053744	hemF	PA14_00280	-	coproporphyrinogen III oxidase
25	 69.94	0	26732..27556	+	274	116053745	aroE	PA14_00290	-	shikimate 5-dehydrogenase
26	 66.57	0	27667..28653	+	328	116053746	plcB	PA14_00300	-	phospholipase C, PlcB
27	 69.31	0	28634..29920	+	428	116053747	-	PA14_00310	-	putative peptidyl-prolyl isomerase
28	 71.64	+1	29917..30519	+	200	116053748	-	PA14_00320	-	hypothetical protein
29	 70.14	0	30523..32076	-	517	116053749	-	PA14_00340	-	putative sulfate transporter
30	 68.94	0	32081..33004	-	307	116053750	-	PA14_00360	-	hypothetical protein
31	 68.45	0	33021..34532	-	503	116053751	betC	PA14_00380	-	choline sulfatase
32	 69.18	0	34645..35559	+	304	116053752	-	PA14_00400	-	LysR family transcriptional regulator
33	 65.08	0	35570..35947	+	125	116053753	-	PA14_00410	-	putative dioxygenase
34	 67.21	0	35926..36291	-	121	116053754	-	PA14_00420	-	histidine phosphotransfer domain-containing protein
35	 63.14	0	36299..36922	-	207	116053755	-	PA14_00430	-	putative two-component response regulator
36	 69.52	0	37108..37914	-	268	116053756	trpA	PA14_00440	-	tryptophan synthase subunit alpha
37	 66.75	0	37911..39119	-	402	116053757	trpB	PA14_00450	-	tryptophan synthase subunit beta
38	 72.75	+1	39223..40110	+	295	116053758	trpI	PA14_00460	-	transcriptional regulator TrpI
39	 57.87	-1	40211..40426	+	71	116053759	-	PA14_00470	-	hypothetical protein
40	 59.65	-1	40610..40837	+	75	116053760	-	PA14_00480	-	hypothetical protein
41	 69.57	0	41133..42821	+	562	116053761	-	PA14_00490	-	putative hemolysin activation/secretion protein
42	 68.84	0	42934..53265	+	3443	116053762	-	PA14_00510	-	putative hemagglutinin
43	 55.28	-2	54577..54699	+	40	116053763	-	PA14_00520	-	hypothetical protein
44	 63.13	0	54909..55304	+	131	116053764	-	PA14_00530	-	hypothetical protein
45	 69.79	0	55575..56984	-	469	116053765	-	PA14_00550	-	hypothetical protein
46	 67.19	0	57148..58476	+	442	116053766	exoT	PA14_00560	-	exoenzyme T
47	 64.34	0	59018..59704	+	228	116053767	-	PA14_00570	-	putative lipoprotein
48	 64.97	0	59735..60088	+	117	116053768	-	PA14_00580	-	putative lipoprotein
49	 68.63	0	60241..60750	+	169	116053769	-	PA14_00590	-	putative lipoprotein
50	 69.27	0	60765..61148	-	127	116053770	-	PA14_00600	-	putative transcriptional regulator
51	 71.66	+1	61430..63091	-	553	116053771	-	PA14_00620	-	hypothetical protein
52	 68.79	0	63701..63841	+	46	116053772	-	PA14_00630	-	hypothetical protein
53	 66.83	0	64665..66497	+	610	116053773	phzH	PA14_00640	-	potential phenazine-modifying enzyme
54	 69.46	0	66550..66978	-	142	116053774	-	PA14_00650	-	hypothetical protein
55	 70.86	+1	67187..67735	-	182	116053775	-	PA14_00660	-	RNA 2'-phosphotransferase-like protein
56	 66.27	0	67774..68280	-	168	116053776	-	PA14_00670	-	hypothetical protein
57	 72.96	+1	68346..69266	-	306	116053777	-	PA14_00680	-	LysR family transcriptional regulator
58	 68.13	0	69374..70261	+	295	116053778	-	PA14_00690	-	hypothetical protein
59	 72.34	+1	70324..71028	+	234	116053779	-	PA14_00700	-	hypothetical protein
60	 66.01	0	71112..71567	+	151	116053780	osmC	PA14_00710	-	osmotically inducible protein OsmC
61	 60.68	-1	71678..71911	+	77	116053781	-	PA14_00720	-	hypothetical protein
62	 71.00	+1	71923..72360	-	145	116053782	-	PA14_00730	-	hypothetical protein
63	 67.87	0	72417..72833	-	138	116053783	-	PA14_00740	-	putative lipoprotein
64	 69.77	0	72925..74052	+	375	116053784	-	PA14_00750	-	hypothetical protein
65	 69.92	0	74060..75043	-	327	116053785	-	PA14_00760	-	hypothetical protein
66	 67.42	0	75076..75741	-	221	116053786	-	PA14_00770	-	hypothetical protein
67	 66.67	0	75734..76276	-	180	116053787	-	PA14_00780	-	hypothetical protein
68	 67.99	0	76354..78399	+	681	116053788	prlC	PA14_00790	-	oligopeptidase A
69	 65.94	0	78396..78671	+	91	116053789	-	PA14_00800	-	hypothetical protein
70	 68.93	0	78760..79818	+	352	116053790	-	PA14_00810	-	putative DNA repair photolyase
71	 68.42	0	80049..80963	-	304	116053791	-	PA14_00820	-	hypothetical protein
72	 66.78	0	81025..82737	-	570	116053792	-	PA14_00830	-	hypothetical protein
73	 73.42	+1	82730..83929	-	399	116053793	-	PA14_00850	-	hypothetical protein
74	 74.86	+1	83929..84648	-	239	116053794	-	PA14_00860	-	putative ATP-binding component of ABC transporter
75	 70.60	0	84645..87743	-	1032	116054435	ppkA	PA14_00875	-	serine/threonine protein kinase PpkA
76	 69.68	0	87751..88479	-	242	116053795	-	PA14_00890	-	putative phosphoprotein phosphatase
77	 72.10	+1	88489..89169	-	226	116053796	-	PA14_00900	-	hypothetical protein
78	 69.90	0	89166..92474	-	1102	116053797	-	PA14_00910	-	hypothetical protein
79	 72.15	+1	92696..94045	-	449	116054405	-	PA14_00925	-	hypothetical protein
80	 70.49	0	94052..95386	-	444	116053798	-	PA14_00940	-	hypothetical protein
81	 71.40	+1	95402..95866	-	154	116053799	-	PA14_00960	-	putative lipoprotein
82	 67.03	0	95911..96453	-	180	116053800	-	PA14_00970	-	hypothetical protein
83	 72.19	+1	96450..97409	-	319	116053801	-	PA14_00980	-	hypothetical protein
84	 70.72	0	97777..98811	+	344	116053802	-	PA14_00990	-	hypothetical protein
85	 63.97	0	98900..99418	+	172	116053803	-	PA14_01010	-	hypothetical protein
86	 64.33	0	99431..100927	+	498	116053804	-	PA14_01020	-	hypothetical protein
87	 62.58	0	101003..101491	+	162	116053805	-	PA14_01030	-	hypothetical protein
88	 70.57	0	101659..102504	+	281	116053806	-	PA14_01040	-	putative secretion protein
89	 69.41	0	102506..103015	+	169	116053807	-	PA14_01060	-	hypothetical protein
90	 69.78	0	103012..104871	+	619	116053808	-	PA14_01070	-	hypothetical protein
91	 70.01	0	104835..105881	+	348	116053809	-	PA14_01080	-	hypothetical protein
92	 68.66	0	105874..108582	+	902	116053810	-	PA14_01100	-	putative ClpA/B-type chaperone
93	 67.18	0	108629..110560	+	643	116053811	-	PA14_01110	-	hypothetical protein
94	 65.61	0	110675..110959	-	94	116053812	-	PA14_01120	-	hypothetical protein
95	 60.68	-1	110972..111205	-	77	116053813	-	PA14_01130	-	hypothetical protein
96	 68.18	0	111195..112514	-	439	116053814	-	PA14_01140	-	hypothetical protein
97	 67.13	0	112593..113027	-	144	116053815	-	PA14_01150	-	hypothetical protein
98	 65.27	0	113281..115506	+	741	116053816	-	PA14_01160	-	hypothetical protein
99	 69.78	0	115534..115983	+	149	116053817	-	PA14_01170	-	hypothetical protein
100	 69.83	0	115913..117112	+	399	116053818	-	PA14_01180	-	hypothetical protein
66.46	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.