IslandPath Analysis: Caldicellulosiruptor saccharolyticus DSM 8903



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.37   STD DEV: 3.64
Caldicellulosiruptor saccharolyticus DSM 8903, complete genome - 1..2970275
2679 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.75	0	642..2006	+	454	146295086	-	Csac_0001	-	chromosomal replication initiator protein DnaA
2	 38.32	0	2227..3330	+	367	146295087	-	Csac_0002	-	DNA polymerase III, beta subunit
3	 32.29	0	3358..4407	+	349	146295088	-	Csac_0003	-	DNA replication and repair protein RecF
4	 31.93	0	4443..4727	+	94	146295089	-	Csac_0004	-	hypothetical protein
5	 40.23	+1	4778..6691	+	637	146295090	-	Csac_0005	-	DNA gyrase, B subunit
6	 40.45	+1	6711..9140	+	809	146295091	-	Csac_0006	-	DNA gyrase, A subunit
7	 35.53	0	9442..11349	+	635	146295092	-	Csac_0007	-	secreted protein
8	 37.37	0	11759..12724	-	321	146295093	-	Csac_0008	-	hypothetical protein
9	 44.44	+2	12864..13187	-	107	146295094	-	Csac_0009	-	hypothetical protein
10	 37.16	0	13921..14286	+	121	146295095	-	Csac_0011	-	hypothetical protein
11	 32.42	0	15465..16781	+	438	146295096	-	Csac_0012	-	hypothetical protein
12	 32.93	0	16765..17766	+	333	146295097	-	Csac_0013	-	hypothetical protein
13	 30.95	-1	17786..18373	-	195	146295098	-	Csac_0014	-	methyltransferase type 11
14	 31.56	-1	18358..21057	-	899	146295099	-	Csac_0015	-	type III restriction enzyme, res subunit
15	 32.87	0	26120..26335	+	71	146295100	-	Csac_0019	-	hypothetical protein
16	 33.30	0	26442..29489	+	1015	146295101	-	Csac_0020	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
17	 31.31	-1	29695..30090	+	131	146295102	-	Csac_0021	-	hypothetical protein
18	 39.08	+1	30182..30442	-	86	146295103	-	Csac_0022	-	stage V sporulation protein S
19	 31.51	-1	30620..31333	+	237	146295104	-	Csac_0023	-	hypothetical protein
20	 31.76	0	31374..31883	+	169	146295105	-	Csac_0024	-	hypothetical protein
21	 34.19	0	31978..32790	+	270	146295106	-	Csac_0025	-	hypothetical protein
22	 35.84	0	34690..34968	+	92	146295107	-	Csac_0028	-	hypothetical protein
23	 38.93	0	35032..36228	+	398	146295108	-	Csac_0029	-	IS605 family transposase OrfB
24	 40.63	+1	36588..37943	+	451	146295109	-	Csac_0030	-	tryptophan synthase subunit beta
25	 33.10	0	37971..38399	-	142	146295110	-	Csac_0031	-	hypothetical protein
26	 30.39	-1	38508..39458	-	316	146295111	-	Csac_0032	-	hypothetical protein
27	 36.67	0	39706..40275	+	189	146295112	-	Csac_0033	-	LemA family protein
28	 41.26	+1	40293..41162	+	289	146295113	-	Csac_0034	-	hypothetical protein
29	 37.56	0	41212..41424	-	70	146295114	-	Csac_0035	-	hypothetical protein
30	 38.51	0	42373..42546	-	57	146295115	-	Csac_0037	-	hypothetical protein
31	 35.43	0	43298..44776	+	492	146295116	-	Csac_0040	-	integrase catalytic subunit
32	 32.83	0	44773..45564	+	263	146295117	-	Csac_0041	-	IstB ATP binding domain-containing protein
33	 34.09	0	45921..46319	+	132	146295118	-	Csac_0042	-	hypothetical protein
34	 35.30	0	46365..47786	+	473	146295119	-	Csac_0043	-	CRISPR-associated DxTHG family protein
35	 33.18	0	47866..49179	+	437	146295120	-	Csac_0044	-	hypothetical protein
36	 31.33	-1	49550..50497	-	315	146295121	-	Csac_0045	-	transposase, IS4 family protein
37	 31.83	0	50669..51598	+	309	146295122	-	Csac_0046	-	hypothetical protein
38	 35.06	0	51634..52731	+	365	146295123	-	Csac_0047	-	hypothetical protein
39	 32.11	0	54450..55841	+	463	146295124	-	Csac_0049	-	ATPase
40	 33.33	0	56054..56617	+	187	146295125	-	Csac_0050	-	hypothetical protein
41	 28.84	-1	56614..57147	+	177	146295126	-	Csac_0051	-	hypothetical protein
42	 36.34	0	57933..59162	+	409	146295127	-	Csac_0052	-	transposase, mutator type
43	 36.85	0	59092..59574	-	160	146295128	-	Csac_0053	-	hypothetical protein
44	 41.07	+1	59608..59982	-	124	146295129	-	Csac_0054	-	hypothetical protein
45	 32.44	0	62398..63519	-	373	146295130	-	Csac_0055	-	hypothetical protein
46	 33.86	0	63753..65825	+	690	146295131	-	Csac_0056	-	CRISPR-associated Csh1 family protein
47	 38.98	0	65847..66731	+	294	146295132	-	Csac_0057	-	CRISPR-associated Csh2 family protein
48	 39.44	+1	66752..67504	+	250	146295133	-	Csac_0058	-	CRISPR-associated Cas5 family protein
49	 37.19	0	67597..68037	+	146	146295134	-	Csac_0059	-	hypothetical protein
50	 32.95	0	68072..68863	-	263	146295135	-	Csac_0060	-	IstB ATP binding domain-containing protein
51	 36.34	0	69030..70259	+	409	146295136	-	Csac_0061	-	transposase, mutator type
52	 34.97	0	70189..71655	-	488	146295137	-	Csac_0062	-	integrase catalytic subunit
53	 35.66	0	71675..73819	+	714	146295138	-	Csac_0063	-	CRISPR-associated helicase Cas3
54	 37.99	0	73788..74345	+	185	146295139	-	Csac_0064	-	CRISPR-associated Cas4 family protein
55	 35.05	0	74396..75388	+	330	146295140	-	Csac_0065	-	CRISPR-associated Cas1 family protein
56	 32.58	0	75394..75657	+	87	146295141	-	Csac_0066	-	CRISPR-associated Cas2 family protein
57	 30.06	-1	75848..76795	-	315	146295142	-	Csac_0067	-	zeta toxin family protein
58	 31.91	0	76834..77115	-	93	146295143	-	Csac_0068	-	hypothetical protein
59	 37.41	0	77279..77965	+	228	146295144	-	Csac_0069	-	hypothetical protein
60	 39.15	+1	79662..80039	-	125	146295145	-	Csac_0071	-	hypothetical protein
61	 30.95	-1	80233..81618	+	461	146295146	-	Csac_0072	-	ATPase
62	 36.63	0	81795..82340	+	181	146295147	-	Csac_0073	-	hypothetical protein
63	 29.08	-1	82597..82737	+	46	146295148	-	Csac_0074	-	hypothetical protein
64	 38.65	0	82852..85335	+	827	146295149	-	Csac_0075	-	CRISPR-associated Csm1 family protein
65	 39.17	+1	85367..85777	+	136	146295150	-	Csac_0076	-	CRISPR-associated Csm2 family protein
66	 41.41	+1	85807..86598	+	263	146295151	-	Csac_0077	-	CRISPR-associated RAMP Csm3 family protein
67	 41.44	+1	86642..87652	+	336	146295152	-	Csac_0078	-	CRISPR-associated RAMP Csm4 family protein
68	 39.25	+1	87642..88808	+	388	146295153	-	Csac_0079	-	CRISPR-associated RAMP Csm5 family protein
69	 34.62	0	88805..89428	+	207	146295154	-	Csac_0080	-	hypothetical protein
70	 36.93	0	89762..90178	-	138	146295155	-	Csac_0081	-	hypothetical protein
71	 34.97	0	90267..90449	-	60	146295156	-	Csac_0082	-	YcfA family protein
72	 37.45	0	91213..92184	-	323	146295157	-	Csac_0083	-	hypothetical protein
73	 29.52	-1	92574..92783	-	69	146295158	-	Csac_0084	-	hypothetical protein
74	 30.40	-1	92746..93018	-	90	146295159	-	Csac_0085	-	hypothetical protein
75	 37.80	0	93277..93567	+	96	146295160	-	Csac_0086	-	hypothetical protein
76	 32.48	0	93783..94952	+	389	146295161	-	Csac_0087	-	hypothetical protein
77	 36.09	0	95215..95613	+	132	146295162	-	Csac_0088	-	hypothetical protein
78	 36.90	0	95658..97085	+	475	146295163	-	Csac_0089	-	CRISPR-associated DxTHG family protein
79	 44.63	+2	97392..97745	-	117	146295164	-	Csac_0090	-	SpoVA protein
80	 42.90	+2	97787..98800	-	337	146295165	-	Csac_0091	-	stage V sporulation protein AD
81	 37.91	0	98849..99307	-	152	146295166	-	Csac_0092	-	SpoVA protein
82	 40.38	+1	99520..99732	+	70	146295167	-	Csac_0093	-	hypothetical protein
83	 38.10	0	99799..100008	+	69	146295168	-	Csac_0094	-	hypothetical protein
84	 35.67	0	100328..100840	+	170	146295169	-	Csac_0095	-	hypothetical protein
85	 36.40	0	101485..103275	-	596	146295170	-	Csac_0097	-	ATPase-like protein
86	 34.56	0	103295..105175	-	626	146295171	-	Csac_0098	-	hypothetical protein
87	 31.33	-1	105344..106291	-	315	146295172	-	Csac_0099	-	transposase, IS4 family protein
88	 37.91	0	106745..107422	-	225	146295173	-	Csac_0100	-	exsB protein
89	 37.60	0	107458..107832	-	124	146295174	-	Csac_0101	-	putative endoribonuclease L-PSP
90	 34.84	0	107874..108272	-	132	146295175	-	Csac_0102	-	hypothetical protein
91	 40.51	+1	108440..108634	+	64	146295176	-	Csac_0103	-	thiamineS protein
92	 38.05	0	108656..109567	+	303	146295177	-	Csac_0104	-	PP-loop domain-containing protein
93	 35.32	0	109638..110291	-	217	146295178	-	Csac_0105	-	radical SAM domain-containing protein
94	 32.20	0	111028..111291	+	87	146295179	-	Csac_0106	-	hypothetical protein
95	 31.11	-1	111281..111910	+	209	146295180	-	Csac_0107	-	hypothetical protein
96	 35.29	0	111978..112385	+	135	146295181	-	Csac_0108	-	hypothetical protein
97	 36.71	0	112454..113401	+	315	146295182	-	Csac_0109	-	biotin--acetyl-CoA-carboxylase ligase
98	 38.20	0	113448..114536	+	362	146295183	-	Csac_0110	-	dihydropteroate synthase
99	 34.34	0	114559..114756	+	65	146295184	-	Csac_0111	-	hypothetical protein
100	 38.64	0	114787..115257	+	156	146295185	-	Csac_0112	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
35.37	MEAN

3.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.