IslandPath Analysis: Burkholderia sp. 383



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.56   STD DEV: 4.25
Burkholderia sp. 383 chromosome 3, complete sequence - 1..1395069
1209 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.78	0	537..845	+	102	78059644	-	Bcep18194_C6524	-	hypothetical protein
2	 68.98	0	1025..1930	-	301	78059645	-	Bcep18194_C6525	-	LysR family transcriptional regulator
3	 70.21	+1	2070..3368	+	432	78059646	-	Bcep18194_C6526	-	adenylosuccinate synthetase
4	 66.67	0	3668..4609	+	313	78059647	-	Bcep18194_C6527	-	LysR family transcriptional regulator
5	 68.11	0	4876..5847	+	323	78059648	-	Bcep18194_C6528	-	ABC transporter, substrate-binding protein, aliphatic sulphonates
6	 67.44	0	5860..7278	-	472	78059649	-	Bcep18194_C6529	-	peptidase M20D, amidohydrolase
7	 69.06	0	7308..8561	-	417	78059650	-	Bcep18194_C6530	-	outer membrane protein, (porin)-like
8	 68.97	0	8513..9904	-	463	78059651	-	Bcep18194_C6531	-	major facilitator transporter
9	 55.68	-2	10402..11229	+	275	78059652	-	Bcep18194_C6532	-	hypothetical protein
10	 58.63	-1	11249..12616	+	455	78059653	-	Bcep18194_C6533	-	hypothetical protein
11	 55.83	-2	12906..14003	-	365	78059654	-	Bcep18194_C6534	-	hypothetical protein
12	 55.54	-2	14010..19049	-	1679	78059655	-	Bcep18194_C6535	-	hypothetical protein
13	 55.56	-2	19216..19998	-	260	78059656	-	Bcep18194_C6536	-	hypothetical protein
14	 55.87	-2	19998..21377	-	459	78059657	-	Bcep18194_C6537	-	hypothetical protein
15	 55.64	-2	21510..22316	+	268	78059658	-	Bcep18194_C6538	-	hypothetical protein
16	 63.75	0	22618..23097	+	159	78059659	-	Bcep18194_C6539	-	response regulator receiver domain-containing protein
17	 55.26	-2	23597..23938	+	113	78059660	-	Bcep18194_C6540	-	XRE family transcriptional regulator
18	 56.30	-2	24442..24798	+	118	78059661	-	Bcep18194_C6541	-	XRE family transcriptional regulator
19	 57.55	-1	25081..25716	+	211	78059662	-	Bcep18194_C6542	-	hypothetical protein
20	 55.18	-2	25697..27646	+	649	78059663	-	Bcep18194_C6543	-	hypothetical protein
21	 56.88	-2	27657..28565	+	302	78059664	-	Bcep18194_C6544	-	hypothetical protein
22	 57.48	-1	28562..29530	+	322	78059665	-	Bcep18194_C6545	-	hypothetical protein
23	 55.07	-2	29622..29897	+	91	78059666	-	Bcep18194_C6546	-	hypothetical protein
24	 58.13	-1	30528..31769	-	413	78059667	-	Bcep18194_C6547	-	CdaR family transcriptional regulator
25	 67.61	0	32033..33310	-	425	78059668	-	Bcep18194_C6548	-	cytochrome c, class I
26	 64.69	0	33313..34932	-	539	78059669	-	Bcep18194_C6549	-	glucose-methanol-choline oxidoreductase
27	 60.52	-1	34932..35468	-	178	78059670	-	Bcep18194_C6550	-	twin-arginine translocation pathway signal
28	 63.79	0	35483..36490	-	335	78059671	-	Bcep18194_C6551	-	cytochrome bd ubiquinol oxidase, subunit II
29	 64.17	0	36494..37894	-	466	78059672	-	Bcep18194_C6552	-	cytochrome bd ubiquinol oxidase, subunit I
30	 60.63	-1	38369..38683	+	104	78059673	-	Bcep18194_C6553	-	hypothetical protein
31	 62.97	0	38697..39752	+	351	78059674	-	Bcep18194_C6554	-	multidrug resistance protein MdtN
32	 61.45	0	39724..41850	+	708	78059675	-	Bcep18194_C6555	-	multidrug efflux system protein MdtO
33	 61.95	0	41853..43337	+	494	78059676	-	Bcep18194_C6556	-	putative outer membrane efflux protein MdtP
34	 59.66	-1	43337..43807	+	156	78059677	-	Bcep18194_C6557	-	MarR family transcriptional regulator
35	 56.95	-2	44967..45872	+	301	78059678	-	Bcep18194_C6558	-	LysR family transcriptional regulator
36	 55.41	-2	46230..47144	+	304	78059679	-	Bcep18194_C6559	-	LysR family transcriptional regulator
37	 64.29	0	48249..48584	+	111	78059680	-	Bcep18194_C6561	-	ArsR family transcriptional regulator
38	 63.91	0	48596..49102	+	168	78059681	-	Bcep18194_C6562	-	protein tyrosine phosphatase
39	 64.15	0	49167..50240	+	357	78059682	-	Bcep18194_C6563	-	putative arsenate-sodium symporter
40	 62.88	0	50262..50684	+	140	78059683	-	Bcep18194_C6564	-	arsenate reductase
41	 64.63	0	50662..51399	+	245	78059684	-	Bcep18194_C6565	-	NADPH-dependent FMN reductase
42	 62.70	0	51422..51850	+	142	78059685	-	Bcep18194_C6566	-	GCN5-related N-acetyltransferase
43	 62.21	0	52400..52825	+	141	78059686	-	Bcep18194_C6567	-	MarR family transcriptional regulator
44	 63.86	0	52951..54552	+	533	78059687	-	Bcep18194_C6568	-	putative amino acid transporter
45	 64.92	0	54586..55848	+	420	78059688	-	Bcep18194_C6569	-	Cl- channel, voltage gated
46	 62.98	0	55845..56549	+	234	78059689	-	Bcep18194_C6570	-	CBS
47	 58.13	-1	56859..57362	-	167	78059690	-	Bcep18194_C6571	-	OmpA/MotB family outer membrane protein
48	 66.25	0	57767..58954	+	395	78059691	-	Bcep18194_C6572	-	major facilitator transporter
49	 63.41	0	59012..60331	+	439	78059692	-	Bcep18194_C6573	-	Cl- channel, voltage gated
50	 59.44	-1	60495..60743	+	82	78059693	-	Bcep18194_C6574	-	hypothetical protein
51	 61.05	-1	60768..62066	-	432	78059694	-	Bcep18194_C6575	-	manganese/iron transporter
52	 61.35	0	62157..63134	-	325	78059695	-	Bcep18194_C6576	-	hypothetical protein
53	 58.38	-1	63515..64069	+	184	78059696	-	Bcep18194_C6577	-	beta-Ig-H3/fasciclin repeat-containing protein
54	 64.29	0	64188..65156	-	322	78059697	-	Bcep18194_C6578	-	esterase/lipase-like protein
55	 68.88	0	65651..66238	-	195	78059698	-	Bcep18194_C6579	-	hypothetical protein
56	 69.13	0	66246..66773	-	175	78059699	-	Bcep18194_C6580	-	hypothetical protein
57	 68.21	0	66763..67992	-	409	78059700	-	Bcep18194_C6581	-	cyclopropane-fatty-acyl-phospholipid synthase
58	 71.23	+1	67989..68843	-	284	78059701	-	Bcep18194_C6582	-	hypothetical protein
59	 70.18	+1	68840..70147	-	435	78059702	-	Bcep18194_C6583	-	FAD dependent oxidoreductase
60	 70.61	+1	70240..70848	-	202	78059703	-	Bcep18194_C6584	-	lipocalin-like protein
61	 68.21	0	70857..71957	-	366	78059704	-	Bcep18194_C6585	-	cyclopropane-fatty-acyl-phospholipid synthase
62	 70.38	+1	71954..72787	-	277	78059705	-	Bcep18194_C6586	-	hypothetical protein
63	 65.44	0	72920..73654	-	244	78059706	-	Bcep18194_C6587	-	hypothetical protein
64	 65.20	0	73651..74262	-	203	78059707	-	Bcep18194_C6588	-	sigma-24 (FecI-like)
65	 64.24	0	74567..75226	-	219	78059708	-	Bcep18194_C6589	-	carbonate dehydratase
66	 59.24	-1	75652..78588	+	978	78059709	-	Bcep18194_C6590	-	transposase Tn3
67	 59.43	-1	79322..83302	+	1326	78059710	-	Bcep18194_C6591	-	hemaglutinin/autotransporter like protein
68	 45.18	-2	83872..84555	+	227	78059711	-	Bcep18194_C6592	-	two component transcriptional regulator
69	 57.63	-1	85335..86042	+	235	78059712	-	Bcep18194_C6593	-	OmpA/MotB family outer membrane protein
70	 55.72	-2	86921..89185	-	754	78059713	-	Bcep18194_C6594	-	hypothetical protein
71	 59.29	-1	89210..91852	-	880	78059714	-	Bcep18194_C6595	-	hypothetical protein
72	 55.33	-2	92031..92321	-	96	78059715	-	Bcep18194_C6596	-	histone-like nucleoid-structuring protein H-NS
73	 55.21	-2	92384..92767	-	127	78059716	-	Bcep18194_C6597	-	nucleotide-binding protein
74	 56.12	-2	93189..96365	+	1058	78059717	-	Bcep18194_C6598	-	hypothetical protein
75	 53.00	-2	97139..98206	+	355	78059718	-	Bcep18194_C6599	-	hypothetical protein
76	 52.80	-2	98172..98546	+	124	78059719	-	Bcep18194_C6600	-	hypothetical protein
77	 56.49	-2	98552..99730	+	392	78059720	-	Bcep18194_C6601	-	hypothetical protein
78	 55.32	-2	99727..100290	+	187	78059721	-	Bcep18194_C6602	-	hypothetical protein
79	 58.02	-1	100665..101069	-	134	78059722	-	Bcep18194_C6603	-	hypothetical protein
80	 68.46	0	101352..102299	+	315	78059723	-	Bcep18194_C6604	-	LysR family transcriptional regulator
81	 67.51	0	102309..103373	-	354	78059724	-	Bcep18194_C6605	-	AraC family transcriptional regulator
82	 67.91	0	103886..104770	+	294	78059725	-	Bcep18194_C6606	-	LysR family transcriptional regulator
83	 67.54	0	105003..106259	+	418	78059726	-	Bcep18194_C6607	-	HlyD family secretion protein
84	 63.57	0	106275..109466	+	1063	78059727	-	Bcep18194_C6608	-	hydrophobe/amphiphile efflux-1 pump, HAE1
85	 67.71	0	109469..111001	+	510	78059728	-	Bcep18194_C6609	-	RND efflux system outer membrane lipoprotein
86	 64.57	0	111143..111856	-	237	78059729	-	Bcep18194_C6610	-	carboxymethylenebutenolidase
87	 66.03	0	112180..112491	-	103	78059730	-	Bcep18194_C6611	-	hypothetical protein
88	 66.86	0	112808..113833	-	341	78059731	-	Bcep18194_C6612	-	transcriptional regulator
89	 61.99	0	113988..114629	+	213	78059732	-	Bcep18194_C6613	-	metal dependent phosphohydrolase
90	 60.47	-1	114823..115209	-	128	78059733	-	Bcep18194_C6614	-	MerR family transcriptional regulator
91	 60.29	-1	115297..116205	+	302	78059734	-	Bcep18194_C6615	-	Alpha/beta hydrolase
92	 66.45	0	116603..117073	+	156	78059735	-	Bcep18194_C6616	-	hypothetical protein
93	 65.62	0	117070..117549	+	159	78059736	-	Bcep18194_C6617	-	hypothetical protein
94	 71.03	+1	117591..118529	-	312	78059737	-	Bcep18194_C6618	-	Phage integrase
95	 62.03	0	118611..119084	-	157	78059738	-	Bcep18194_C6619	-	small integral membrane protein
96	 69.54	0	119409..120764	-	451	78059739	-	Bcep18194_C6620	-	xanthine/uracil/vitamin C transporter
97	 66.84	0	120823..121947	-	374	78059740	-	Bcep18194_C6621	-	hypothetical protein
98	 68.86	0	122050..123006	+	318	78059741	-	Bcep18194_C6622	-	LysR family transcriptional regulator
99	 67.73	0	123156..125231	+	691	78059742	-	Bcep18194_C6623	-	gamma-glutamyltransferase 1
100	 62.60	0	125311..125679	+	122	78059743	-	Bcep18194_C6624	-	hypothetical protein
65.56	MEAN

4.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.