IslandPath Analysis: Tropheryma whipplei str. Twist



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.62   STD DEV: 3.15
Tropheryma whipplei str. Twist, complete genome - 1..927303
808 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.83	-2	1..1437	+	478	28492968	dnaA	TWT001	-	chromosomal replication initiator protein
2	 37.83	-2	1767..2900	+	377	28492969	dnaN	TWT002	-	DNA polymerase III subunit beta
3	 38.83	-2	2890..3981	+	363	28492970	recF	TWT003	-	recF protein
4	 39.77	-2	4011..4445	+	144	28492971	-	TWT004	-	hypothetical protein
5	 47.64	0	4485..6434	+	649	28492972	gyrB	TWT005	-	DNA gyrase subunit B
6	 49.27	0	6438..8897	+	819	28492973	gyrA1	TWT006	-	DNA gyrase subunit A
7	 44.88	0	8894..9274	+	126	28492974	-	TWT007	-	hypothetical protein
8	 49.29	0	9640..10341	-	233	28492975	-	TWT008	-	hypothetical protein
9	 50.70	+1	10457..11095	+	212	28492976	-	TWT009	-	hypothetical protein
10	 50.48	+1	11133..11342	-	69	28492977	-	TWT010	-	putative septation inhibitor protein
11	 50.86	+1	11399..12037	+	212	28492978	pabA	TWT011	-	para-aminobenzoate synthetase component II
12	 49.56	0	12143..12715	+	190	28492979	-	TWT012	-	hypothetical protein
13	 48.86	0	12752..13627	+	291	28492980	-	TWT013	-	putative protease HtpX
14	 47.31	0	13628..13999	+	123	28492981	-	TWT014	-	hypothetical protein
15	 51.09	+1	14119..15402	+	427	28492982	-	TWT015	-	hypothetical protein
16	 48.83	0	15427..16278	+	283	28492983	-	TWT016	-	2,5-diketo-D-gluconic acid reductase
17	 48.76	0	16394..18046	-	550	28492984	pmmB	TWT017	-	phosphomannomutase
18	 50.40	+1	18059..18943	-	294	28492985	deoD	TWT018	-	purine nucleoside phosphorylase
19	 48.66	0	18949..20370	+	473	28492986	-	TWT019	-	flavoprotein disulfide reductase
20	 46.11	0	20439..22214	-	591	28492987	bccA	TWT020	-	biotin carboxylase
21	 49.45	0	22687..23139	+	150	28492988	-	TWT021	-	hypothetical protein
22	 45.45	0	23155..23550	+	131	28492989	-	TWT022	-	hypothetical protein
23	 46.70	0	24086..25663	-	525	28492990	pccB	TWT023	-	propionyl-CoA carboxylase beta chain
24	 44.18	0	25725..26471	+	248	28492991	birA	TWT024	-	biotin acetyl-CoA carboxylase ligase
25	 44.59	0	26548..27009	-	153	28492992	-	TWT025	-	hypothetical protein
26	 48.04	0	26789..28243	+	484	28492993	purK	TWT026	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
27	 48.07	0	28322..28864	+	180	28492994	purE	TWT027	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
28	 46.81	0	29089..29511	-	140	28492995	-	TWT028	-	hypothetical protein
29	 48.84	0	29815..30678	-	287	28492996	rmlD	TWT029	-	dTDP-4-dehydrorhamnose reductase
30	 45.63	0	30675..31658	-	327	28492997	rmlB	TWT030	-	dTDP-glucose 4,6-dehydratase
31	 50.16	+1	31903..32526	+	207	28492998	rmlC	TWT031	-	dTDP-4-dehydrorhamnose 3,5-epimerase
32	 44.94	0	32582..33460	+	292	28492999	rmlA	TWT032	-	glucose-1-phosphate thymidylyltransferase
33	 45.11	0	33468..34316	-	282	28493000	wbbL	TWT033	-	glycosyl transferase
34	 42.26	-1	34313..35119	-	268	28493001	-	TWT034	-	ABC transporter ATP-binding protein
35	 43.85	0	35171..36064	-	297	28493002	-	TWT035	-	ABC transporter permease protein
36	 45.99	0	36127..37098	+	323	28493003	-	TWT036	-	glycosyltransferase
37	 44.44	0	37206..37646	-	146	28493004	-	TWT037	-	hypothetical protein
38	 48.42	0	37559..38287	-	242	28493005	-	TWT038	-	glycosyltransferase
39	 49.62	0	38645..40486	+	613	28493006	-	TWT039	-	hypothetical protein
40	 47.25	0	41337..41846	+	169	28493007	-	TWT040	-	hypothetical protein
41	 53.14	+2	42390..42596	+	68	28493008	-	TWT041	-	hypothetical protein
42	 47.12	0	42593..42991	+	132	28493009	-	TWT042	-	hypothetical protein
43	 42.63	-1	43118..43429	+	103	28493010	-	TWT043	-	hypothetical protein
44	 47.45	0	43793..44224	+	143	28493011	-	TWT044	-	hypothetical protein
45	 46.41	0	44228..44617	+	129	28493012	-	TWT045	-	hypothetical protein
46	 44.81	0	44764..46218	-	484	28493013	-	TWT046	-	two-component system sensor histidine kinase
47	 47.88	0	46222..46977	-	251	28493014	-	TWT047	-	two-component system response regulator
48	 50.53	+1	47170..47547	+	125	28493015	capB	TWT048	-	cold shock protein B
49	 44.19	0	47875..48657	+	260	28493016	soj	TWT049	-	putative sporulation protein Soj
50	 46.35	0	48731..49867	+	378	28493017	tyrA	TWT050	-	prephenate dehydrogenase
51	 48.33	0	49849..51909	+	686	28493018	-	TWT051	-	bifunctional cytidylate kinase/GTP-binding protein
52	 43.91	0	51906..53210	-	434	28493019	menF	TWT052	-	isochorismate synthase
53	 49.17	0	53279..53998	+	239	28493020	ubiE	TWT053	-	ubiquinone/menaquinone biosynthesis methyltransferase
54	 48.67	0	54010..55026	+	338	28493021	grcC	TWT054	-	heptaprenyl diphosphate synthase component II
55	 48.07	0	55045..56388	+	447	28493022	-	TWT055	-	ferredoxin--NADP+ reductase
56	 47.43	0	56728..57699	-	323	28493023	fecB	TWT056	-	iron (III) dicitrate ABC transporter substrate-binding protein
57	 47.19	0	57844..58839	-	331	28493024	-	TWT057	-	iron ABC transporter substrate-binding protein
58	 42.33	-1	59057..59890	-	277	28493025	fepC	TWT058	-	iron ABC transporter ATP-binding protein
59	 45.88	0	59826..61013	-	395	28493026	fepG	TWT059	-	iron ABC transporter permease protein
60	 47.62	0	60866..61831	-	321	28493027	fepD	TWT060	-	iron ABC transporter permease protein
61	 40.80	-1	62223..62570	+	115	28493028	-	TWT061	-	transcriptional regulator
62	 45.48	0	62866..64503	-	545	28493029	lysK	TWT062	-	lysyl-tRNA synthetase
63	 46.02	0	64592..65458	+	288	28493030	panC	TWT063	-	pantoate--beta-alanine ligase
64	 43.69	0	65755..67251	+	498	28493031	cls	TWT064	-	cardiolipin synthetase
65	 49.50	0	67303..69825	+	840	28493032	clpC	TWT065	-	ATP-dependent Clp protease ATP-binding subunit
66	 47.56	0	70003..70227	-	74	28493033	-	TWT066	-	hypothetical protein
67	 44.78	0	70228..70524	+	98	28493034	-	TWT067	-	hypothetical protein
68	 49.05	0	70560..72143	+	527	28493035	menD	TWT068	-	2-oxoglutarate decarboxylase
69	 44.14	0	72153..72698	+	181	28493036	-	TWT069	-	hypothetical protein
70	 47.15	0	72719..73630	+	303	28493037	menA	TWT070	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
71	 50.63	+1	73769..77335	+	1188	28493038	rpoB	TWT071	-	DNA-directed RNA polymerase subunit beta
72	 48.87	0	77362..81222	+	1286	28493039	rpoC	TWT072	-	DNA-directed RNA polymerase subunit beta'
73	 46.99	0	81461..82822	-	453	28493040	-	TWT073	-	lysophospholipase/serine esterase fusion protein
74	 53.44	+2	82917..83279	+	120	28493041	groES	TWT074	-	co-chaperonin GroES
75	 51.08	+1	83330..84805	+	491	28493042	guaB1	TWT075	-	inosine-5'-monophosphate dehydrogenase
76	 50.04	+1	84777..85931	+	384	28493043	guaB2	TWT076	-	inositol-5-monophosphate dehydrogenase
77	 46.29	0	85897..86637	+	246	28493044	-	TWT077	-	hypothetical protein
78	 46.12	0	86703..87140	+	145	28493045	-	TWT078	-	hypothetical protein
79	 46.56	0	87137..88648	+	503	28493046	guaA	TWT079	-	bifunctional GMP synthase/glutamine amidotransferase protein
80	 44.98	0	88753..90984	+	743	28493047	pcrA	TWT080	-	ATP-dependent DNA helicase
81	 53.01	+2	91006..91254	+	82	28493048	-	TWT081	-	hypothetical protein
82	 43.03	-1	91251..92735	+	494	28493049	-	TWT082	-	hypothetical protein
83	 44.44	0	92728..93375	+	215	28493050	purN	TWT083	-	phosphoribosylglycinamide formyltransferase
84	 47.02	0	93415..95043	+	542	28493051	purH	TWT084	-	IMP cyclohydrolase
85	 43.57	0	95131..95472	-	113	28493052	-	TWT085	-	hypothetical protein
86	 43.03	-1	95499..96632	+	377	28493053	-	TWT086	-	putative drug efflux protein
87	 44.00	0	96533..97666	-	377	28493054	truB	TWT087	-	tRNA pseudouridine synthase B
88	 43.62	0	97711..98838	+	375	28493055	-	TWT088	-	membrane-associated Zn-dependent protease-like protein
89	 46.97	0	98840..99946	-	368	28493056	dxr	TWT089	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
90	 46.01	0	99986..100750	+	254	28493057	-	TWT090	-	protein phosphatase
91	 45.97	0	100773..102410	-	545	28493058	-	TWT091	-	hypothetical protein
92	 46.43	0	102623..102874	+	83	28493059	-	TWT092	-	hypothetical protein
93	 43.17	-1	102859..104292	+	477	28493060	-	TWT093	-	hypothetical protein
94	 44.86	0	104289..105008	+	239	28493061	-	TWT094	-	ABC transporter ATP-binding protein
95	 36.13	-2	105005..105361	+	118	28493062	-	TWT095	-	hypothetical protein
96	 47.22	0	105397..105576	+	59	28493063	-	TWT096	-	hypothetical protein
97	 47.81	0	108152..109201	-	349	28493064	xerD	TWT097	-	integrase/recombinase
98	 48.60	0	110980..111588	-	202	28493065	-	TWT098	-	hypothetical protein
99	 36.84	-2	111787..111957	-	56	28493066	-	TWT099	-	hypothetical protein
100	 47.50	0	111967..113604	-	545	28493067	pyrG	TWT100	-	CTP synthetase
46.62	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.