IslandPath Analysis: Thermobifida fusca YX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.65   STD DEV: 3.42
Thermobifida fusca YX, complete genome - 1..3642249
3110 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.13	0	195..2042	+	615	72160407	-	Tfu_0001	-	chromosomal replication initiator protein DnaA
2	 66.32	0	2800..3942	+	380	161723112	-	Tfu_0002	-	DNA polymerase III subunit beta
3	 67.68	0	4002..4886	+	294	72160409	-	Tfu_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 69.31	0	4988..6121	+	377	72160410	recF	Tfu_0004	-	recombination protein F
5	 68.97	0	6111..6632	+	173	72160411	-	Tfu_0005	-	hypothetical protein
6	 64.15	-1	6950..8935	+	661	72160412	gyrB	Tfu_0006	-	DNA gyrase subunit B
7	 66.98	0	8992..11538	+	848	72160413	-	Tfu_0007	-	DNA gyrase subunit A
8	 63.20	-1	11738..12430	+	230	72160414	-	Tfu_0008	-	hypothetical protein
9	 68.14	0	13759..14910	+	383	72160415	-	Tfu_0009	-	putative transferase
10	 65.24	0	14917..15828	+	303	72160416	-	Tfu_0010	-	n-acetylneuraminate synthase
11	 66.77	0	15907..16869	+	320	72160417	-	Tfu_0011	-	putative glycosyltransferase
12	 68.47	0	16874..18202	+	442	72160418	-	Tfu_0012	-	hypothetical protein
13	 71.94	+1	18230..18988	-	252	72160419	-	Tfu_0013	-	putative integral membrane protein
14	 70.10	0	19163..20473	-	436	72160420	-	Tfu_0014	-	hypothetical protein
15	 71.22	+1	20470..21501	-	343	72160421	-	Tfu_0015	-	hypothetical protein
16	 68.40	0	21573..22844	-	423	72160422	-	Tfu_0016	-	mannose-6-phosphate isomerase
17	 69.42	0	23403..24821	-	472	72160423	-	Tfu_0017	-	cell envelope-related transcriptional attenuator
18	 62.48	-1	24941..25561	-	206	72160424	-	Tfu_0018	-	hypothetical protein
19	 65.48	0	25692..27041	+	449	72160425	-	Tfu_0019	-	primary replicative DNA helicase
20	 63.55	-1	27533..28045	-	170	72160426	-	Tfu_0020	-	hypothetical protein
21	 57.14	-2	28061..28228	-	55	72160427	-	Tfu_0021	-	hypothetical protein
22	 68.89	0	28370..28594	-	74	72160428	-	Tfu_0022	-	hypothetical protein
23	 60.68	-2	29947..30447	+	166	72160429	-	Tfu_0025	-	hypothetical protein
24	 65.45	0	30506..31000	+	164	72160430	-	Tfu_0026	-	hypothetical protein
25	 69.98	0	31030..31482	+	150	72160431	-	Tfu_0027	-	tRNA-adenosine deaminase
26	 68.83	0	32519..33625	-	368	72160432	-	Tfu_0028	-	hypothetical protein
27	 70.59	0	33709..34626	+	305	72160433	-	Tfu_0029	-	LysR family transcriptional regulator
28	 59.62	-2	34593..34904	-	103	72160434	-	Tfu_0030	-	hypothetical protein
29	 67.30	0	35195..36463	-	422	72160435	-	Tfu_0031	-	seryl-tRNA synthetase
30	 66.67	0	36945..37511	-	188	72160436	-	Tfu_0032	-	hypothetical protein
31	 71.19	+1	38112..38906	+	264	72160437	-	Tfu_0033	-	GntR family transcriptional regulator
32	 63.36	-1	38934..39296	-	120	72160438	-	Tfu_0034	-	hypothetical protein
33	 66.67	0	39579..40034	-	151	72160439	-	Tfu_0035	-	hypothetical protein
34	 65.06	0	40150..40398	-	82	72160440	-	Tfu_0036	-	hypothetical protein
35	 61.79	-1	40654..41022	-	122	72160441	-	Tfu_0037	-	hypothetical protein
36	 67.93	0	41202..41438	-	78	72160442	-	Tfu_0038	-	hypothetical protein
37	 67.95	0	41749..41982	-	77	72160443	-	Tfu_0039	-	hypothetical protein
38	 68.38	0	42286..42519	-	77	72160444	-	Tfu_0040	-	hypothetical protein
39	 60.38	-2	42815..43180	+	121	72160445	-	Tfu_0041	-	hypothetical protein
40	 67.04	0	43435..44493	-	352	72160446	-	Tfu_0042	-	aspartate semialdehyde dehydrogenase
41	 63.29	-1	44490..45761	-	423	72160447	-	Tfu_0043	-	aspartate kinase
42	 66.17	0	45983..46582	-	199	72160448	recR	Tfu_0044	-	recombination protein RecR
43	 63.82	-1	46682..47032	-	116	72160449	-	Tfu_0045	-	hypothetical protein
44	 68.57	0	47324..49162	+	612	72160450	-	Tfu_0046	-	hypothetical protein
45	 63.58	-1	49207..52773	-	1188	72160451	dnaE	Tfu_0047	-	DNA polymerase III subunit alpha
46	 62.50	-1	53074..53409	-	111	72160452	-	Tfu_0048	-	hypothetical protein
47	 59.70	-2	53440..53640	-	66	72160453	-	Tfu_0049	-	hypothetical protein
48	 58.19	-2	53663..55018	-	451	72160454	-	Tfu_0050	-	hypothetical protein
49	 69.07	0	55183..57261	-	692	72160455	-	Tfu_0051	-	DNA polymerase III subunits gamma and tau
50	 65.71	0	58893..59519	+	208	72160456	-	Tfu_0052	-	hypothetical protein
51	 51.65	-2	59730..60761	+	343	72160457	-	Tfu_0053	-	hypothetical protein
52	 59.18	-2	60758..62374	+	538	72160458	-	Tfu_0054	-	hypothetical protein
53	 66.99	0	62826..63449	+	207	72160459	-	Tfu_0055	-	hypothetical protein
54	 68.69	0	63613..65841	-	742	72160460	-	Tfu_0056	-	WD-40 repeat-containing tyrosine protein kinase
55	 71.02	0	65942..67549	-	535	72160461	-	Tfu_0057	-	putative regulatory protein
56	 66.87	0	67652..68626	+	324	72160462	-	Tfu_0058	-	agmatinase
57	 66.00	0	68727..70235	+	502	72160463	-	Tfu_0059	-	putative transporter
58	 67.53	0	70512..71909	+	465	72160464	-	Tfu_0060	-	putative oxidoreductase, oxygen dependent, FAD-dependent protein
59	 67.48	0	71944..74154	-	736	72160465	-	Tfu_0061	-	helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
60	 63.36	-1	74123..75454	-	443	72160466	-	Tfu_0062	-	hypothetical protein
61	 62.25	-1	75451..79521	-	1356	72160467	-	Tfu_0063	-	hypothetical protein
62	 66.52	0	80214..82304	+	696	72160468	-	Tfu_0064	-	putative DNA helicase
63	 62.59	-1	82337..84619	+	760	72160469	-	Tfu_0065	-	hypothetical protein
64	 62.87	-1	85040..85276	-	78	72160470	-	Tfu_0066	-	hypothetical protein
65	 68.22	0	85575..86345	+	256	72160471	-	Tfu_0067	-	enoyl-CoA hydratase
66	 67.52	0	86404..87579	-	391	72160472	-	Tfu_0068	-	putative acyl-CoA dehydrogenase
67	 66.83	0	87664..88272	+	202	72160473	-	Tfu_0069	-	putative transcriptional regulator
68	 69.26	0	88458..88919	-	153	72160474	-	Tfu_0070	-	hypothetical protein
69	 67.38	0	90403..90963	-	186	72160475	-	Tfu_0071	-	hypothetical protein
70	 68.19	0	91027..92013	-	328	72160476	-	Tfu_0072	-	putative quinone oxidoreductase
71	 71.51	+1	92245..94104	+	619	72160477	-	Tfu_0073	-	ATPase involved in chromosome partitioning
72	 66.33	0	94397..95581	+	394	72160478	-	Tfu_0074	-	ABC branched-chain amino acid transporter substrate-binding protein
73	 69.77	0	95583..96356	+	257	72160479	-	Tfu_0075	-	ABC-type branched-chain amino acid transport systems ATPase component
74	 70.55	0	96353..97099	+	248	72160480	-	Tfu_0076	-	ABC-type branched-chain amino acid transport systems ATPase component
75	 68.56	0	97096..97992	+	298	72160481	-	Tfu_0077	-	branched-chain amino acid ABC transporter permease protein
76	 71.29	+1	97989..99113	+	374	72160482	-	Tfu_0078	-	branched-chain amino acid ABC transporter permease protein
77	 70.43	0	99258..100133	+	291	72160483	-	Tfu_0079	-	alpha/beta hydrolase superfamily protein
78	 70.93	0	100065..102011	-	648	72160484	-	Tfu_0080	-	GAF domain-containing protein
79	 67.28	0	101996..102811	-	271	72160485	-	Tfu_0081	-	3-hydroxybutyrate dehydrogenase
80	 68.84	0	103048..104292	+	414	72160486	-	Tfu_0082	-	esterase, PHB depolymerase
81	 66.83	0	104784..106598	+	604	72160487	-	Tfu_0083	-	phosphoenolpyruvate carboxykinase
82	 69.40	0	106919..107650	-	243	72160488	-	Tfu_0084	-	hypothetical protein
83	 66.67	0	107759..108214	+	151	72160489	-	Tfu_0085	-	hypothetical protein
84	 67.11	0	108704..109843	+	379	72160490	-	Tfu_0086	-	DNA polymerase III subunit beta
85	 66.67	0	110008..110298	-	96	72160491	-	Tfu_0087	-	hypothetical protein
86	 64.80	0	110298..110726	-	142	72160492	-	Tfu_0088	-	hypothetical protein
87	 62.94	-1	110867..111697	+	276	72160493	-	Tfu_0089	-	hypothetical protein
88	 62.21	-1	112611..113462	+	283	72160494	-	Tfu_0090	-	helix-hairpin-helix DNA-binding motif-containing protein
89	 62.50	-1	113470..113661	+	63	72160495	-	Tfu_0091	-	hypothetical protein
90	 69.18	0	113933..114925	+	330	72160496	-	Tfu_0092	-	malate dehydrogenase
91	 67.83	0	115018..115446	-	142	72160497	-	Tfu_0093	-	hypothetical protein
92	 68.30	0	115646..116503	-	285	72160498	-	Tfu_0094	-	hypothetical protein
93	 67.06	0	116630..117139	-	169	72160499	-	Tfu_0095	-	hypothetical protein
94	 71.14	+1	117311..118114	+	267	72160500	-	Tfu_0096	-	phenazine biosynthesis PhzC/PhzF protein
95	 69.56	0	118103..119002	-	299	72160501	-	Tfu_0097	-	hypothetical protein
96	 64.38	0	119935..120546	+	203	72160502	-	Tfu_0098	-	hypothetical protein
97	 64.99	0	120568..120924	+	118	72160503	-	Tfu_0099	-	hypothetical protein
98	 67.87	0	121094..123427	+	777	72160504	-	Tfu_0100	-	RNA binding S1:resolvase, RNase H-like fold
99	 69.99	0	123472..124254	-	260	72160505	-	Tfu_0101	-	hypothetical protein
100	 65.09	0	124388..125020	+	210	72160506	-	Tfu_0102	-	transcriptional regulator
67.65	MEAN

3.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.