IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.93   STD DEV: 3.43
Vibrio vulnificus CMCP6 chromosome I, complete genome - 1..3281944
2915 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.91	-1	1..1002	-	333	27363491	-	VV1_0001	-	putative beta-lactamase class A
2	 42.65	-1	1131..2117	-	328	27363492	-	VV1_0002	-	putative GTPase
3	 43.24	-1	2180..3844	-	554	27363493	-	VV1_0003	-	D-glutamate deacylase
4	 47.03	0	4490..5548	-	352	27363494	-	VV1_0004	-	hypothetical protein
5	 46.67	0	5621..5965	-	114	27363495	-	VV1_0005	-	transposase
6	 44.98	0	6115..7050	-	311	27363496	-	VV1_0006	-	permease
7	 37.74	-2	7740..10256	-	838	27363497	-	VV1_0007	-	small-conductance mechanosensitive channel
8	 40.15	-1	10356..10898	-	180	27363498	-	VV1_0008	-	hypothetical protein
9	 40.12	-1	10998..11969	-	323	27363499	-	VV1_0009	-	ABC-type transport system, periplasmic component
10	 42.70	-1	11962..12783	-	273	27363500	-	VV1_0010	-	ABC-type transport system, ATPase component
11	 42.74	-1	12793..13866	-	357	27363501	-	VV1_0011	-	ABC-type transport system, permease component
12	 42.06	-1	15188..15565	+	125	27363502	-	VV1_0013	-	hypothetical protein
13	 48.87	0	15571..16902	+	443	27363503	-	VV1_0014	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
14	 44.66	0	16924..17532	-	202	27363504	-	VV1_0015	-	hypothetical protein
15	 50.25	0	17701..18096	+	131	27363505	-	VV1_0016	-	hypothetical protein
16	 39.13	-2	18143..18418	-	91	27363506	-	VV1_0017	-	DNA uptake protein
17	 45.54	0	18578..20437	-	619	27363507	-	VV1_0018	-	parvulin-like peptidyl-prolyl isomerase
18	 45.92	0	20614..20907	-	97	27363508	-	VV1_0019	-	nucleoid DNA-binding protein
19	 44.44	0	21080..21385	-	101	27363509	-	VV1_0020	-	ATP-dependent Lon protease
20	 47.21	0	21370..23430	-	686	27363510	-	VV1_0021	-	ATP-dependent Lon protease
21	 46.45	0	23549..24829	-	426	27363511	clpX	VV1_0022	-	ATP-dependent protease ATP-binding subunit
22	 44.82	0	24900..25526	-	208	27363512	clpP	VV1_0023	-	ATP-dependent Clp protease proteolytic subunit
23	 44.96	0	25632..26930	-	432	27363513	tig	VV1_0024	-	trigger factor
24	 48.43	0	27482..29269	+	595	27363514	-	VV1_0025	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system
25	 48.32	0	29271..30611	+	446	27363515	-	VV1_0026	-	response regulator
26	 44.56	0	30706..32664	-	652	27363516	-	VV1_0027	-	transglutaminase-like enzyme
27	 49.63	0	32859..34220	-	453	27363517	-	VV1_0028	-	TRAP-type C4-dicarboxylate transport system, large permease component
28	 47.28	0	34224..34904	-	226	27363518	-	VV1_0029	-	TRAP-type C4-dicarboxylate transport system, small permease component
29	 48.85	0	34955..35953	-	332	27363519	-	VV1_0030	-	TRAP-type C4-dicarboxylate transport system, periplasmic component
30	 50.63	+1	36523..37638	-	371	27363520	-	VV1_0032	-	ABC-type sugar transport system, ATPase component
31	 48.72	0	37644..38501	-	285	27363521	-	VV1_0033	-	ABC-type sugar transport system, permease component
32	 49.03	0	38498..39421	-	307	27363522	-	VV1_0034	-	ABC-type sugar transport system, permease component
33	 50.32	0	39527..40774	-	415	27363523	-	VV1_0035	-	ABC-type sugar transport system, periplasmic component
34	 50.73	+1	40894..42330	-	478	27363524	-	VV1_0036	-	Signal transduction histidine kinase
35	 50.62	+1	42342..43070	-	242	27363525	-	VV1_0037	-	response regulator
36	 51.93	+1	43338..44810	-	490	27363526	-	VV1_0039	-	hypothetical protein
37	 50.03	0	44888..46522	-	544	27363527	-	VV1_0040	-	methyl-accepting chemotaxis protein
38	 49.60	0	46829..49846	-	1005	27363528	-	VV1_0041	-	RTX toxin
39	 49.48	0	50129..51385	-	418	27363529	-	VV1_0042	-	dehydrogenase
40	 45.00	0	51410..52480	-	356	27363530	-	VV1_0043	-	SAM-dependent methyltransferase
41	 40.34	-1	52511..52867	-	118	27363531	-	VV1_0044	-	hypothetical protein
42	 47.83	0	53029..53697	+	222	27363532	-	VV1_0045	-	hypothetical protein
43	 42.82	-1	53694..54452	+	252	27363533	-	VV1_0046	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
44	 37.55	-2	54547..54807	+	86	27363534	-	VV1_0047	-	Acyl carrier protein
45	 43.92	0	54824..55078	+	84	27363535	-	VV1_0048	-	acyl carrier protein
46	 46.06	0	55082..55639	+	185	27363536	-	VV1_0049	-	hypothetical protein
47	 49.20	0	55647..57014	+	455	27363537	-	VV1_0050	-	AMP-(fatty) acid ligase
48	 48.92	0	57027..57398	+	123	27363538	-	VV1_0051	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase
49	 48.54	0	57391..59100	+	569	27363539	-	VV1_0052	-	acyltransferase
50	 51.01	+1	59084..60622	+	512	27363540	-	VV1_0053	-	histidine ammonia-lyase
51	 46.76	0	60631..61077	+	148	27363541	-	VV1_0054	-	thioesterase
52	 48.48	0	61077..61703	+	208	27363542	-	VV1_0055	-	hypothetical protein
53	 50.15	0	61732..64002	+	756	27363543	-	VV1_0056	-	exporter
54	 45.83	0	64056..64607	+	183	27363544	-	VV1_0057	-	hypothetical protein
55	 50.67	+1	64617..65804	+	395	27363545	-	VV1_0058	-	3-oxoacyl-(acyl carrier protein) synthase I
56	 49.68	0	65797..66261	+	154	27363546	-	VV1_0059	-	3-hydroxylacyl-(acyl carrier protein) dehydratase
57	 50.83	+1	66258..66983	+	241	27363547	fabG	VV1_0060	-	3-ketoacyl-(acyl-carrier-protein) reductase
58	 50.98	+1	66980..68209	+	409	27363548	-	VV1_0061	-	3-oxoacyl-(acyl carrier protein) synthase II
59	 49.78	0	68550..69224	-	224	27363549	-	VV1_0063	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit
60	 48.39	0	69225..69722	-	165	27363550	-	VV1_0064	-	hypothetical protein
61	 46.71	0	70129..70614	-	161	27363551	-	VV1_0065	-	transcriptional regulator
62	 43.96	0	70656..71276	-	206	27363552	-	VV1_0066	-	bacteriophage phi 1.45 protein-like protein
63	 43.46	-1	71269..71505	-	78	27363553	-	VV1_0067	-	hypothetical protein
64	 45.71	0	71539..71748	-	69	27363554	-	VV1_0068	-	hypothetical protein
65	 41.57	-1	71783..72037	-	84	27363555	-	VV1_0069	-	hypothetical protein
66	 43.33	-1	72030..72269	-	79	27363556	-	VV1_0070	-	hypothetical protein
67	 43.12	-1	72273..72824	-	183	27363557	-	VV1_0071	-	ATP-dependent 26S proteasome regulatory subunit
68	 52.03	+1	72848..75607	-	919	27363558	-	VV1_0072	-	hypothetical protein
69	 47.81	0	75573..75800	-	75	27363559	-	VV1_0074	-	hypothetical protein
70	 52.00	+1	75862..76161	-	99	27363560	-	VV1_0075	-	hypothetical protein
71	 50.96	+1	76154..76465	-	103	27363561	-	VV1_0076	-	hypothetical protein
72	 50.46	+1	76476..76691	-	71	27363562	-	VV1_0077	-	hypothetical protein
73	 51.06	+1	76679..77383	-	234	27363563	-	VV1_0078	-	site-specific recombinase XerC
74	 50.00	0	77413..77892	-	159	27363564	-	VV1_0079	-	bacteriophage phi gp55-like protein
75	 44.97	0	78084..78272	-	62	27363565	-	VV1_0080	-	hypothetical protein
76	 48.20	0	78408..79214	+	268	27363566	-	VV1_0081	-	transcriptional regulator
77	 49.79	0	79555..79797	+	80	27363567	-	VV1_0083	-	transcriptional regulator
78	 40.79	-1	79781..81094	-	437	27363568	-	VV1_0084	-	hypothetical protein
79	 52.58	+1	81167..82174	-	335	27363569	-	VV1_0085	-	Phage protein D
80	 50.24	0	82165..82371	-	68	27363570	-	VV1_0086	-	P2-like prophage tail protein X
81	 51.77	+1	82368..82763	-	131	27363571	-	VV1_0087	-	Phage protein U
82	 54.58	+2	82772..84898	-	708	27363572	-	VV1_0088	-	hypothetical protein
83	 50.61	+1	84939..85349	-	136	27363573	-	VV1_0089	-	hypothetical protein
84	 50.71	+1	85359..85853	-	164	27363574	-	VV1_0090	-	Phage tail tube protein FII
85	 53.06	+1	85886..87046	-	386	27363575	-	VV1_0091	-	Phage tail sheath protein FI
86	 55.91	+2	87113..87391	-	92	27363576	-	VV1_0092	-	A/G-specific DNA glycosylase
87	 40.58	-1	87479..89809	-	776	27363577	-	VV1_0093	-	Phage-related tail fiber protein
88	 48.39	0	89814..90464	-	216	27363578	-	VV1_0094	-	bacteriophage P2-related tail formation protein
89	 50.41	+1	90461..91321	-	286	27363579	-	VV1_0095	-	Phage-related baseplate assembly protein
90	 50.29	0	91318..91665	-	115	27363580	-	VV1_0096	-	dTDP-glucose pyrophosphorylase
91	 55.17	+2	91664..91750	+	28	27363581	-	VV1_0097	-	hypothetical protein
92	 56.67	+2	91669..91758	-	29	27363582	-	VV1_0098	-	hypothetical protein
93	 48.77	0	91931..92416	-	161	27363583	-	VV1_0099	-	hypothetical protein
94	 49.04	0	92418..93041	-	207	27363584	-	VV1_0100	-	Phage P2 baseplate assembly protein GPV
95	 49.44	0	93041..93574	-	177	27363585	-	VV1_0101	-	hypothetical protein
96	 48.30	0	93574..94074	-	166	27363586	-	VV1_0102	-	hypothetical protein
97	 50.66	+1	94067..94672	-	201	27363587	-	VV1_0103	-	hypothetical protein
98	 45.45	0	94681..94977	-	98	27363588	-	VV1_0104	-	chromosome segregation ATPase
99	 50.92	+1	94967..95563	-	198	27363589	-	VV1_0105	-	hypothetical protein
100	 47.21	0	95613..96203	-	196	27363590	-	VV1_0106	-	ATPase component of ABC transporter
46.93	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.