IslandPath Analysis: Gluconobacter oxydans 621H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.46   STD DEV: 3.86
Gluconobacter oxydans 621H, complete genome - 1..2702173
2432 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.51	0	155..1594	+	479	58038492	dnaA	GOX0001	-	chromosomal replication initiation protein
2	 59.29	0	1685..2809	+	374	58038493	-	GOX0002	-	DNA polymerase III subunit beta
3	 61.41	0	2823..3926	+	367	58038494	recF	GOX0003	-	recombination protein F
4	 61.76	0	4012..6456	+	814	58038495	-	GOX0004	-	DNA gyrase subunit B
5	 59.37	0	6488..7282	+	264	58038496	-	GOX0005	-	hypothetical protein
6	 60.07	0	7343..8677	+	444	58038497	-	GOX0006	-	hypothetical protein
7	 59.17	0	8677..10503	+	608	58038498	-	GOX0007	-	D-fructose-6-phosphate amidotransferase
8	 60.52	0	10950..13391	+	813	58038499	-	GOX0008	-	putative oxidoreductase
9	 62.00	0	13647..14267	+	206	58038500	-	GOX0009	-	thiamin-phosphate pyrophosphorylase
10	 62.01	0	14317..16893	+	858	58038501	-	GOX0010	-	putative Na+/H+ antiporter
11	 60.78	0	16890..18317	-	475	58038502	-	GOX0011	-	di-/tripeptide transporter
12	 51.18	-2	18324..18704	-	126	58038503	-	GOX0012	-	hypothetical protein
13	 59.44	0	19142..20524	+	460	58038504	-	GOX0013	-	hypothetical protein
14	 60.65	0	20633..21430	-	265	58038505	-	GOX0014	-	PhnP protein
15	 61.70	0	21427..22212	-	261	58038506	-	GOX0015	-	Sec-independent protein translocase protein TatD
16	 60.99	0	22209..23759	-	516	58038507	-	GOX0016	-	methionyl-tRNA synthetase
17	 64.65	0	23775..24617	-	280	58038508	-	GOX0017	-	DNA polymerase III delta prime subunit DnaC
18	 64.81	0	24695..25339	-	214	58038509	-	GOX0018	-	thymidylate kinase
19	 62.43	0	25344..26618	-	424	58038510	-	GOX0019	-	D-alanyl-D-alanine carboxypeptidase
20	 67.02	+1	26615..27463	-	282	58038511	-	GOX0020	-	rare lipoprotein A
21	 62.85	0	27450..28445	-	331	58038512	-	GOX0021	-	membrane-bound lytic murein transglycosylase
22	 62.48	0	28474..30264	+	596	58038513	-	GOX0022	-	hypothetical protein
23	 61.72	0	30286..30750	-	154	58038514	-	GOX0023	-	putative toluene tolerance protein
24	 62.63	0	30934..31776	+	280	58038515	uppP	GOX0024	-	undecaprenyl pyrophosphate phosphatase
25	 61.35	0	31815..33356	+	513	58038516	-	GOX0025	-	amino acid permease
26	 61.94	0	33348..34553	-	401	58038517	-	GOX0026	-	hypothetical protein
27	 61.95	0	34907..35776	+	289	58038518	-	GOX0028	-	hypothetical protein
28	 61.15	0	35836..36288	-	150	58038519	-	GOX0029	-	hypothetical protein
29	 64.55	0	36559..37407	-	282	58038520	-	GOX0030	-	HemK family protein
30	 60.72	0	37435..37905	+	156	58038521	-	GOX0031	-	hypothetical protein
31	 60.08	0	37909..38970	-	353	58038522	-	GOX0032	-	peptide chain release factor 1
32	 62.02	0	38975..40222	-	415	58038523	hisS	GOX0033	-	histidyl-tRNA synthetase
33	 60.65	0	40222..41367	-	381	58038524	ispG	GOX0034	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
34	 66.90	+1	41459..42730	-	423	58038525	-	GOX0035	-	hypothetical protein
35	 64.18	0	42745..43788	-	347	58038526	-	GOX0036	-	enoyl[acyl-carrier-protein] reductase
36	 62.08	0	43785..45179	-	464	58038527	-	GOX0037	-	aspartate kinase
37	 62.83	0	45285..46040	+	251	58038528	-	GOX0038	-	3-demethylubiquinone-9 3-methyltransferase
38	 59.98	0	46104..47375	-	423	58038529	-	GOX0039	-	putative hemagglutinin-related protein
39	 59.71	0	47471..47959	-	162	58038530	-	GOX0040	-	hypothetical protein
40	 61.24	0	47960..48217	-	85	58038531	-	GOX0041	-	glutaredoxin
41	 61.14	0	48225..48911	-	228	58038532	-	GOX0042	-	competence protein F
42	 60.32	0	48992..49180	-	62	58038533	-	GOX0043	-	hypothetical protein
43	 59.55	0	49217..51505	-	762	58038534	-	GOX0044	-	phosphomannomutase
44	 62.82	0	51862..52563	+	233	58038535	lipB	GOX0046	-	lipoyltransferase
45	 62.63	0	52544..53137	-	197	58038536	-	GOX0047	-	Outer-membrane lipoprotein carrier protein
46	 60.95	0	53134..53448	-	104	58038537	-	GOX0048	-	BolA protein
47	 63.61	0	53518..54138	+	206	58038538	-	GOX0049	-	DnaJ family protein
48	 62.34	0	54224..55240	+	338	58038539	-	GOX0050	-	cobalt insertion protein CobS
49	 64.82	0	55173..57119	+	648	58038540	-	GOX0051	-	cobalamin biosynthesis protein CobT
50	 63.10	0	57073..58500	-	475	58038541	-	GOX0052	-	aromatic-L-amino-acid decarboxylase
51	 56.20	-1	58578..59399	-	273	58038542	-	GOX0053	-	hypothetical protein
52	 65.39	+1	59501..60364	+	287	58038543	-	GOX0054	-	hypothetical protein
53	 62.46	0	60353..63874	-	1173	58038544	-	GOX0055	-	transcription-repair coupling factor
54	 64.02	0	63947..66097	+	716	58038545	-	GOX0056	-	ATP-dependent DNA helicase RecG
55	 61.02	0	66176..67876	+	566	58038546	-	GOX0057	-	sensory box/GGDEF family protein
56	 55.56	-1	68469..69206	+	245	58038547	-	GOX0058	-	hypothetical protein
57	 62.88	0	69211..69897	+	228	58038548	-	GOX0059	-	putative transcriptional regulator cold shock protein
58	 60.00	0	70045..70539	-	164	58038549	smpB	GOX0060	-	SsrA-binding protein
59	 59.98	0	70548..71459	-	303	58038550	-	GOX0061	-	dihydropicolinate synthase
60	 62.83	0	71480..72313	-	277	58038551	-	GOX0062	-	prephenate dehydratase
61	 63.50	0	72313..73038	-	241	161898753	-	GOX0063	-	3-deoxy-manno-octulosonate cytidylyltransferase
62	 64.51	0	73114..73902	+	262	58038553	-	GOX0064	-	inositol-1-monophosphatase
63	 62.67	0	74043..75293	+	416	58038554	-	GOX0065	-	D-3-phosphoglycerate dehydrogenase
64	 63.47	0	75344..76846	+	500	58038555	-	GOX0066	-	competence protein ComM
65	 61.74	0	76850..78067	-	405	58038556	-	GOX0067	-	cystathionine beta-lyase
66	 66.19	+1	78064..78900	-	278	58038557	-	GOX0068	-	thiosulfate sulfurtransferase
67	 64.44	0	79030..80109	+	359	58038558	-	GOX0069	-	hypothetical protein
68	 63.16	0	80106..80732	+	208	58038559	-	GOX0070	-	hypothetical protein
69	 61.00	0	80738..82150	-	470	58038560	-	GOX0071	-	cardiolipin synthetase
70	 65.84	+1	82306..83028	+	240	58038561	-	GOX0072	-	arginyl-tRNA-protein transferase
71	 62.14	0	83047..85257	-	736	58038562	-	GOX0073	-	DNA topoisomerase IV subunit A
72	 62.93	0	86604..87512	-	302	58038563	tsf	GOX0074	-	elongation factor Ts
73	 61.65	0	87614..88411	-	265	58038564	rpsB	GOX0075	-	30S ribosomal protein S2
74	 57.55	-1	88604..92026	-	1140	58038565	dnaE	GOX0076	-	DNA polymerase III subunit alpha
75	 62.64	0	92094..92789	-	231	58038566	-	GOX0077	-	lipoprotein releasing system ATP-binding protein
76	 59.63	0	92782..94032	-	416	58038567	-	GOX0078	-	lipoprotein releasing system transmembrane protein
77	 61.58	0	94032..95348	-	438	58038568	-	GOX0079	-	prolyl-tRNA synthetase
78	 62.33	0	95360..97018	-	552	58038569	-	GOX0080	-	metal-dependent hydrolase
79	 60.39	0	97059..97871	-	270	58038570	-	GOX0081	-	pantothenate kinase
80	 61.48	0	97888..98619	-	243	58038571	-	GOX0082	-	biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase
81	 62.46	0	98789..99073	-	94	58038572	-	GOX0084	-	DNA-binding protein HU
82	 59.34	0	99215..101779	-	854	58038573	-	GOX0085	-	ATP-dependent protease La
83	 59.40	0	101932..103197	-	421	58038574	clpX	GOX0086	-	ATP-dependent protease ATP-binding subunit
84	 59.72	0	103394..104041	-	215	58038575	-	GOX0087	-	ATP-dependent Clp protease proteolytic subunit
85	 60.81	0	104176..105507	-	443	58038576	tig	GOX0088	-	trigger factor
86	 64.73	0	105721..107217	-	498	58038577	-	GOX0090	-	putative sugar kinase
87	 63.58	0	107398..107850	+	150	58038578	-	GOX0091	-	hypothetical protein
88	 63.60	0	107974..110355	+	793	58038579	-	GOX0092	-	ATP-dependent RNA helicase
89	 62.44	0	110348..111673	+	441	58038580	-	GOX0093	-	tRNA (Uracil-5-) -methyltransferase
90	 56.91	-1	111991..112359	-	122	58038581	-	GOX0094	-	phenylacetic acid degradation protein PaaD
91	 60.06	0	112356..113597	-	413	58038582	-	GOX0095	-	NifS-like aminotransferase
92	 60.98	0	113594..114772	-	392	58038583	-	GOX0096	-	ABC transporter permease protein
93	 60.70	0	114787..115557	-	256	58038584	-	GOX0097	-	ABC transporter ATP-binding protein
94	 60.12	0	115559..117040	-	493	58038585	-	GOX0098	-	cysteine desulfurase activator complex subunit SufB
95	 62.11	0	117053..117535	-	160	58038586	-	GOX0099	-	putative transcriptional regulator
96	 62.00	0	117656..117805	-	49	58038587	-	GOX0100	-	putative membrane-spanning protein
97	 63.83	0	117889..118944	-	351	58038588	-	GOX0101	-	putative membrane-spanning protein
98	 64.34	0	119013..121850	+	945	58038589	-	GOX0102	-	putative phosphoenolpyruvate carboxylase
99	 60.54	0	121940..123523	+	527	58038590	-	GOX0103	-	carboxypeptidase-related protein
100	 62.13	0	123582..123956	-	124	58038591	-	GOX0104	-	hypothetical protein
61.46	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.