IslandPath Analysis: Vibrio harveyi ATCC BAA-1116



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.03   STD DEV: 3.78
Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence - 1..2204018
2374 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.78	+1	823..1269	+	148	156975953	-	VIBHAR_04723	-	hypothetical protein
2	 41.83	0	1356..1508	+	50	156975954	-	VIBHAR_04724	-	hypothetical protein
3	 39.76	-1	1457..1876	+	139	156975955	-	VIBHAR_04725	-	hypothetical protein
4	 44.24	0	2403..2567	-	54	156975957	-	VIBHAR_04727	-	hypothetical protein
5	 50.42	+1	2513..3835	+	440	156975956	-	VIBHAR_04726	-	hypothetical protein
6	 51.74	+1	3819..4106	+	95	156975958	-	VIBHAR_04728	-	hypothetical protein
7	 43.23	0	4288..5217	-	309	156975959	-	VIBHAR_04729	-	hypothetical protein
8	 41.46	0	5807..6175	-	122	156975960	-	VIBHAR_04730	-	DNA invertase
9	 39.32	-1	6472..6588	+	38	156975961	-	VIBHAR_04731	-	hypothetical protein
10	 47.38	0	6766..7776	-	336	156975962	-	VIBHAR_04732	-	hypothetical protein
11	 45.43	0	7800..8237	-	145	156975963	-	VIBHAR_04733	-	hypothetical protein
12	 40.54	-1	8409..8963	+	184	156975964	-	VIBHAR_04734	-	transposase
13	 46.15	0	9250..9600	+	116	156975965	-	VIBHAR_04735	-	hypothetical protein
14	 45.76	0	9645..9821	+	58	156975966	-	VIBHAR_04736	-	hypothetical protein
15	 44.11	0	9743..10039	+	98	156975967	-	VIBHAR_04737	-	hypothetical protein
16	 35.37	-2	10173..10760	-	195	156975968	-	VIBHAR_04738	-	cytochrome b561
17	 46.52	0	10870..12333	-	487	156975969	-	VIBHAR_04739	-	N-acetylglucosamine-binding protein A
18	 47.67	0	12545..13465	-	306	156975970	-	VIBHAR_04740	-	hypothetical protein
19	 40.85	-1	13571..13783	+	70	156975971	-	VIBHAR_04741	-	hypothetical protein
20	 37.96	-1	13757..13864	-	35	156975972	-	VIBHAR_04742	-	hypothetical protein
21	 45.76	0	13884..14366	-	160	156975973	-	VIBHAR_04743	-	transcriptional regulator
22	 48.50	0	14487..15086	+	199	156975974	-	VIBHAR_04744	-	putative threonine efflux protein
23	 42.58	0	15225..15992	+	255	156975975	-	VIBHAR_04745	-	transcriptional regulator
24	 46.10	0	15986..16126	+	46	156975976	-	VIBHAR_04746	-	NADPH-quinone reductase
25	 47.05	0	16229..17314	-	361	156975977	-	VIBHAR_04747	-	methyl-accepting chemotaxis protein
26	 46.41	0	17581..18276	-	231	156975978	-	VIBHAR_04748	-	hypothetical protein
27	 44.59	0	18497..19162	-	221	156975979	-	VIBHAR_04749	-	transcriptional regulator
28	 50.06	+1	19538..20446	+	302	156975980	-	VIBHAR_04750	-	3-hydroxyisobutyrate dehydrogenase
29	 49.48	+1	20472..21728	+	418	156975981	-	VIBHAR_04751	-	4-hydroxythreonine-4-phosphate dehydrogenase
30	 49.38	+1	21740..22387	+	215	156975982	-	VIBHAR_04752	-	putative aldolase
31	 48.91	+1	22387..23163	+	258	156975983	-	VIBHAR_04753	-	hydroxypyruvate isomerase
32	 50.27	+1	23277..24734	+	485	156975984	-	VIBHAR_04754	-	H+/gluconate symporter
33	 47.38	0	24843..25262	-	139	156975985	-	VIBHAR_04755	-	lactoylglutathione lyase
34	 44.90	0	25405..25551	+	48	156975986	-	VIBHAR_04756	-	hypothetical protein
35	 43.38	0	25585..25803	-	72	156975987	-	VIBHAR_04757	-	hypothetical protein
36	 47.42	0	25839..26129	-	96	156975988	-	VIBHAR_04758	-	hypothetical protein
37	 47.52	0	27668..27808	+	46	156975989	-	VIBHAR_04759	-	hypothetical protein
38	 45.50	0	27727..27948	+	73	156975990	-	VIBHAR_04760	-	hypothetical protein
39	 47.55	0	27945..29513	-	522	156975991	-	VIBHAR_04761	-	alkyl hydroperoxide reductase, subunit F
40	 45.88	0	29686..30243	-	185	156975992	-	VIBHAR_04762	-	alkyl hydroperoxide reductase c22 protein
41	 48.61	0	30549..30980	-	143	156975993	-	VIBHAR_04763	-	hypothetical protein
42	 49.17	+1	31145..31567	+	140	156975994	-	VIBHAR_04764	-	redox protein, regulator of disulfide bond formation
43	 39.09	-1	31832..32074	+	80	156975995	-	VIBHAR_04765	-	hypothetical protein
44	 38.69	-1	32088..32423	+	111	156975996	-	VIBHAR_04766	-	plasmid stabilization system protein protein
45	 51.91	+1	32477..33574	-	365	156975997	-	VIBHAR_04767	-	hypothetical protein
46	 44.57	0	33917..34183	-	88	156975998	-	VIBHAR_04768	-	hypothetical protein
47	 45.06	0	34484..35839	+	451	156975999	-	VIBHAR_04769	-	hypothetical protein
48	 48.92	+1	35934..37043	-	369	156976000	-	VIBHAR_04770	-	hydrolase
49	 50.38	+1	37043..39553	-	836	156976001	-	VIBHAR_04771	-	peptide ABC transporter permease
50	 49.93	+1	39540..40274	-	244	156976002	-	VIBHAR_04772	-	putative transport protein of outer membrane lipoproteins
51	 47.55	0	40514..41146	+	210	156976003	-	VIBHAR_04773	-	isochorismatase
52	 46.67	0	41135..41269	-	44	156976004	-	VIBHAR_04774	-	hypothetical protein
53	 44.94	0	41250..41585	-	111	156976005	-	VIBHAR_04775	-	glutathione peroxidase
54	 45.79	0	41592..41864	-	90	156976006	-	VIBHAR_04776	-	transcriptional regulator
55	 46.04	0	42119..42787	+	222	156976007	-	VIBHAR_04777	-	NAD(P)H quinone oxidoreductase
56	 42.90	0	42838..43140	+	100	156976008	-	VIBHAR_04778	-	hypothetical protein
57	 37.04	-2	43115..43249	-	44	156976009	-	VIBHAR_04779	-	hypothetical protein
58	 40.74	-1	43385..43762	-	125	156976010	-	VIBHAR_04780	-	hypothetical protein
59	 47.49	0	43814..45805	-	663	156976011	-	VIBHAR_04781	-	peptidase
60	 52.50	+1	45989..46927	-	312	156976012	-	VIBHAR_04782	-	hypothetical protein
61	 45.91	0	47017..47175	+	52	156976013	-	VIBHAR_04783	-	hypothetical protein
62	 49.23	+1	47162..49048	-	628	156976014	-	VIBHAR_04784	-	histidine kinase
63	 47.29	0	49367..52117	+	916	156976015	-	VIBHAR_04785	-	zinc protease
64	 47.40	0	52181..52507	-	108	156976016	-	VIBHAR_04786	-	donor-ubiquinone reductase I
65	 44.76	0	52714..53142	+	142	156976017	-	VIBHAR_04787	-	hypothetical protein
66	 40.17	-1	53163..53279	-	38	156976018	-	VIBHAR_04788	-	hypothetical protein
67	 34.07	-2	53449..53583	-	44	156976019	-	VIBHAR_04789	-	hypothetical protein
68	 44.61	0	53646..54470	+	274	156976020	-	VIBHAR_04790	-	integrase
69	 35.56	-2	54638..54772	-	44	156976021	-	VIBHAR_04791	-	hypothetical protein
70	 46.38	0	54960..55595	+	211	156976022	-	VIBHAR_04792	-	hypothetical protein
71	 47.70	0	55928..56449	+	173	156976023	-	VIBHAR_04793	-	P pilus assembly protein
72	 45.11	0	56518..58980	+	820	156976024	-	VIBHAR_04794	-	porin PapC
73	 45.42	0	59030..59749	+	239	156976025	-	VIBHAR_04795	-	chaperone PapD
74	 47.30	0	59749..60786	+	345	156976026	-	VIBHAR_04796	-	hypothetical protein
75	 46.63	0	60799..61791	+	330	156976027	-	VIBHAR_04797	-	hypothetical protein
76	 46.03	0	61923..62111	-	62	156976028	-	VIBHAR_04798	-	hypothetical protein
77	 51.11	+1	62276..62410	-	44	156976029	-	VIBHAR_04799	-	hypothetical protein
78	 48.18	0	62419..63711	+	430	156976030	-	VIBHAR_04800	-	RNA-directed DNA polymerase
79	 43.15	0	63796..64182	-	128	156976031	-	VIBHAR_04801	-	hypothetical protein
80	 47.01	0	64344..64460	+	38	156976032	-	VIBHAR_04802	-	lactoylglutathione lyase
81	 46.80	0	64534..65454	-	306	156976033	-	VIBHAR_04803	-	hypothetical protein
82	 49.94	+1	65656..66432	+	258	156976034	-	VIBHAR_04804	-	sugar kinase
83	 46.58	0	66637..67761	+	374	156976035	-	VIBHAR_04805	-	hypothetical protein
84	 46.93	0	67842..68150	-	102	156976036	-	VIBHAR_04806	-	cell shape determination protein CcmA
85	 48.64	0	68189..69142	-	317	156976037	-	VIBHAR_04807	-	hypothetical protein
86	 36.11	-2	69243..69422	+	59	156976038	-	VIBHAR_04808	-	hypothetical protein
87	 48.33	0	69545..71338	+	597	156976039	-	VIBHAR_04809	-	hypothetical protein
88	 49.96	+1	71413..72597	-	394	156976040	-	VIBHAR_04810	-	Xaa-His dipeptidase
89	 48.10	0	72594..73223	-	209	156976041	-	VIBHAR_04811	-	DNA invertase
90	 48.02	0	73409..74416	-	335	156976042	-	VIBHAR_04812	-	hypothetical protein
91	 48.91	+1	74672..75769	-	365	156976043	-	VIBHAR_04813	-	hypothetical protein
92	 47.79	0	75935..76951	-	338	156976044	-	VIBHAR_04814	-	hypothetical protein
93	 47.76	0	77053..78348	-	431	156976045	-	VIBHAR_04815	-	permease
94	 45.46	0	78626..80167	+	513	156976046	-	VIBHAR_04816	-	alkaline phosphatase synthesis sensor protein phoR
95	 47.63	0	80179..81549	+	456	156976047	-	VIBHAR_04817	-	L-serine deaminase
96	 43.75	0	81554..81697	-	47	156976048	-	VIBHAR_04818	-	hypothetical protein
97	 45.00	0	81751..81990	-	79	156976049	-	VIBHAR_04819	-	hypothetical protein
98	 47.24	0	82177..84225	-	682	156976050	-	VIBHAR_04820	-	glycogen operon protein GlgX
99	 47.10	0	84580..85923	+	447	156976051	-	VIBHAR_04821	-	maltoporin
100	 43.33	0	86027..86836	+	269	156976052	-	VIBHAR_04822	-	hypothetical protein
45.03	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.