IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.71	0	540..1070	-	176	167626226	-	Fphi_0005	-	shikimate kinase I
2	 34.48	0	1196..2944	-	582	167626227	-	Fphi_0006	-	type IV pili secretin component
3	 28.09	-1	2954..3544	-	196	167626228	-	Fphi_0007	-	type IV pili lipoprotein
4	 29.50	0	3550..4149	-	199	167626229	-	Fphi_0008	-	type IV pili glycosylation protein
5	 30.32	0	4143..4706	-	187	167626230	-	Fphi_0009	-	type IV pili associated protein
6	 29.75	0	4710..5714	-	334	167626231	-	Fphi_0010	-	type IV pili, pilus assembly protein
7	 33.03	0	5841..6491	+	216	167626232	-	Fphi_0011	-	nucleoside-triphosphate--adenylate kinase
8	 31.39	0	6497..9220	-	907	167626233	-	Fphi_0012	-	D-lactate dehydrogenase (cytochrome)
9	 25.66	-2	9282..9698	-	138	167626234	-	Fphi_0013	-	hypothetical protein
10	 30.43	0	9709..10602	-	297	167626235	-	Fphi_0014	-	GTP-binding protein Era
11	 34.42	0	10724..11914	-	396	167626236	-	Fphi_0015	-	aspartate aminotransferase
12	 32.34	0	11924..12730	-	268	167626237	-	Fphi_0016	-	hypothetical protein
13	 33.18	0	12735..13373	-	212	167626238	-	Fphi_0017	-	glycoprotease family protein
14	 33.77	0	13377..14510	-	377	167626239	-	Fphi_0018	-	N-acetylglucosamine-6-phosphate deacetylase
15	 32.76	0	14573..15442	+	289	167626240	-	Fphi_0019	-	GTP-binding protein
16	 30.29	0	15511..17250	+	579	167626241	-	Fphi_0020	-	hypothetical protein
17	 33.50	0	17280..17873	-	197	167626242	-	Fphi_0021	-	thymidine kinase
18	 30.39	0	17876..18520	-	214	167626243	-	Fphi_0022	-	O-methyltransferase family protein
19	 33.26	0	18707..20035	+	442	167626244	-	Fphi_0023	-	2-alkenal reductase
20	 33.33	0	20039..21022	+	327	167626245	-	Fphi_0024	-	PhoH family protein, putative ATPase
21	 32.70	0	21015..21491	+	158	167626246	-	Fphi_0025	-	hypothetical protein
22	 28.94	-1	21493..22335	+	280	167626247	-	Fphi_0026	-	HlyC/CorC family transporter-associated protein
23	 33.13	0	22335..23831	+	498	167626248	-	Fphi_0027	-	apolipoprotein N-acyltransferase
24	 29.74	0	23852..24352	+	166	167626249	-	Fphi_0028	-	hypothetical protein
25	 28.71	-1	24440..25153	-	237	167626250	-	Fphi_0029	-	hypothetical protein
26	 30.80	0	25364..26233	+	289	167626251	-	Fphi_0031	-	Beta-lactamase
27	 31.53	0	26224..27276	-	350	167626252	-	Fphi_0030	-	DNA/RNA endonuclease G
28	 32.72	0	27362..29149	-	595	167626253	-	Fphi_0032	-	M24 family peptidase
29	 32.63	0	29176..29883	-	235	167626254	-	Fphi_0033	-	hypothetical protein
30	 37.73	+1	29898..31103	-	401	167626255	-	Fphi_0034	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
31	 32.53	0	31201..31947	+	248	167626256	-	Fphi_0035	-	hypothetical protein
32	 33.18	0	31957..32610	-	217	167626257	-	Fphi_0036	-	N-acetyl-beta-hexosaminidase-like protein
33	 28.59	-1	32775..34397	-	540	167626258	-	Fphi_0037	-	Beta-N-acetylhexosaminidase
34	 33.62	0	34514..35890	-	458	167626259	-	Fphi_0038	-	2-alkenal reductase
35	 33.24	0	35944..36975	-	343	167626260	-	Fphi_0039	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
36	 33.10	0	37173..38447	+	424	167626261	-	Fphi_0040	-	sodium-dicarboxylate symporter family protein
37	 32.54	0	38471..39862	-	463	167626262	-	Fphi_0041	-	hypothetical protein
38	 31.39	0	39972..40589	+	205	167626263	-	Fphi_0042	-	hypothetical protein
39	 38.60	+1	40677..40847	+	56	167626264	-	Fphi_0043	-	rubredoxin
40	 32.99	0	40856..41728	+	290	167626265	-	Fphi_0044	-	hypothetical protein
41	 27.92	-1	41733..42323	-	196	167626266	-	Fphi_0045	-	hypothetical protein
42	 30.37	0	42529..43473	+	314	167626267	-	Fphi_0047	-	integrase, catalytic region
43	 30.57	0	43470..44336	-	288	167626268	-	Fphi_0046	-	hypothetical protein
44	 36.47	+1	44619..46436	+	605	167626269	-	Fphi_0048	-	GTP binding translational elongation factor Tu and G family protein
45	 35.30	0	46508..47320	+	270	167626270	-	Fphi_0049	-	short chain dehydrogenase/reductase family oxidoreductase
46	 36.03	+1	47346..49091	-	581	167626271	-	Fphi_0050	-	gamma-glutamyltransferase
47	 35.40	0	49212..50129	-	305	167626272	-	Fphi_0051	-	VacJ like lipoprotein
48	 28.93	-1	50208..51410	-	400	167626273	-	Fphi_0052	-	lipoprotein
49	 28.16	-1	51403..51963	-	186	167626274	-	Fphi_0053	-	transposase
50	 33.99	0	51956..52261	-	101	167626275	-	Fphi_0054	-	hypothetical protein
51	 31.94	0	52261..52692	-	143	167626276	-	Fphi_0055	-	oligoketide cyclase/lipid transport protein
52	 39.45	+2	52767..53240	+	157	167626277	-	Fphi_0056	-	SsrA-binding protein
53	 31.00	0	53242..54012	+	256	167626278	-	Fphi_0057	-	hypothetical protein
54	 30.26	0	54433..55377	+	314	167626279	-	Fphi_0058	-	integrase, catalytic region
55	 30.72	0	55382..55534	-	50	167626280	-	Fphi_0059	-	hypothetical protein
56	 36.38	+1	55549..56205	-	218	167626281	-	Fphi_0060	-	hypothetical protein
57	 30.26	0	56240..57184	-	314	167626282	-	Fphi_0061	-	integrase, catalytic region
58	 30.13	0	57293..57916	-	207	167626283	-	Fphi_0062	-	phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase
59	 35.01	0	57925..58698	-	257	167626284	-	Fphi_0063	-	imidazole glycerol phosphate synthase subunit HisF
60	 34.30	0	58692..59417	-	241	167626285	-	Fphi_0064	-	1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamideisomerase
61	 31.32	0	59418..60014	-	198	167626286	-	Fphi_0065	-	imidazole glycerol phosphate synthase subunit HisH
62	 33.43	0	60011..61087	-	358	167626287	-	Fphi_0066	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
63	 30.20	0	61074..62159	-	361	167626288	-	Fphi_0067	-	histidinol-phosphate aminotransferase
64	 34.95	0	62164..63462	-	432	167626289	-	Fphi_0068	-	histidinol dehydrogenase
65	 31.74	0	63472..64473	-	333	167626290	-	Fphi_0069	-	ATP phosphoribosyltransferase
66	 33.49	0	64790..66061	-	423	167626291	-	Fphi_0070	-	metabolite:H+ symporter (MHS) family protein
67	 29.10	-1	66093..67226	+	377	167626292	-	Fphi_0071	-	hypothetical protein
68	 29.33	-1	67301..68374	+	357	167626293	-	Fphi_0073	-	hypothetical protein
69	 31.37	0	68371..68574	-	67	167626294	-	Fphi_0072	-	hypothetical protein
70	 31.17	0	68558..69943	-	461	167626295	-	Fphi_0074	-	exodeoxyribonuclease VII large subunit
71	 31.22	0	70044..71273	-	409	167626296	-	Fphi_0075	-	hypothetical protein
72	 34.44	0	71388..72563	+	391	167626297	-	Fphi_0076	-	hippurate hydrolase
73	 31.84	0	72560..73096	+	178	167626298	-	Fphi_0077	-	hypothetical protein
74	 32.53	0	73103..74854	-	583	167626299	-	Fphi_0078	-	transglutaminase-like superfamily protein
75	 31.10	0	74877..75860	-	327	167626300	-	Fphi_0079	-	hypothetical protein
76	 34.85	0	75864..77312	-	482	167626301	-	Fphi_0080	-	hypothetical protein
77	 26.77	-1	77493..78710	-	405	167626302	-	Fphi_0081	-	hypothetical protein
78	 26.70	-1	78747..79937	-	396	167626303	-	Fphi_0082	-	hypothetical protein
79	 29.07	-1	80040..81281	-	413	167626304	-	Fphi_0083	-	major facilitator transporter
80	 33.41	0	81294..82571	-	425	167626305	-	Fphi_0084	-	metabolite:H+ symporter (MHS) family protein
81	 30.26	0	82743..83687	+	314	167626306	-	Fphi_0085	-	integrase, catalytic region
82	 30.82	0	83708..84463	-	251	167626307	-	Fphi_0086	-	UBA/ThiF-type NAD/FAD binding fold
83	 31.00	0	84464..85921	-	485	167626308	-	Fphi_0087	-	thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase
84	 35.13	0	85933..86712	-	259	167626309	-	Fphi_0088	-	ThiG protein thiamine biosynthesis
85	 26.87	-1	86716..86916	-	66	167626310	-	Fphi_1923	-	hypothetical protein
86	 32.00	0	86919..87971	-	350	167626311	-	Fphi_0089	-	thiamine biosynthesis protein ThiO
87	 34.12	0	87964..89742	-	592	167626312	-	Fphi_0090	-	thiamin biosynthesis protein
88	 32.71	0	89995..90792	-	265	167626313	-	Fphi_0091	-	glutamate racemase
89	 29.70	0	90792..91589	-	265	167626314	-	Fphi_0092	-	membrane protein of unknown function
90	 35.18	0	91623..93629	-	668	167626315	-	Fphi_0093	-	excinuclease ABC subunit B
91	 31.61	0	93630..95078	-	482	167626316	-	Fphi_0094	-	exodeoxyribonuclease I
92	 34.30	0	95228..95950	-	240	167626317	-	Fphi_0095	-	oxidoreductase, short-chain dehydrogenase family protein
93	 31.24	0	96066..96974	+	302	167626318	-	Fphi_0096	-	LysR family transcriptional regulator
94	 27.85	-1	96976..97869	-	297	167626319	-	Fphi_0097	-	hypothetical protein
95	 27.87	-1	97856..98935	-	359	167626320	-	Fphi_0098	-	hypothetical protein
96	 36.46	+1	99079..100962	+	627	167626321	-	Fphi_0099	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
97	 34.36	0	100975..101364	+	129	167626322	-	Fphi_0100	-	lipoprotein
98	 27.57	-1	101384..102754	+	456	167626323	-	Fphi_0101	-	hypothetical protein
99	 31.11	0	102756..103430	+	224	167626324	-	Fphi_0102	-	ribose-5-phosphate isomerase A
100	 30.79	0	103439..104302	-	287	167626325	-	Fphi_0103	-	pirin-related protein
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.