IslandPath Analysis: Streptococcus mutans UA159



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.10   STD DEV: 3.90
Streptococcus mutans UA159, complete genome - 1..2030921
1960 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.48	0	194..1552	+	452	24378533	dnaA	SMU.01	-	chromosomal replication initiation protein
2	 32.81	-1	1708..2844	+	378	24378534	dnaN	SMU.02	-	DNA polymerase III subunit beta
3	 39.58	0	3106..3297	+	63	24378535	-	SMU.05	-	hypothetical protein
4	 36.92	0	3461..4576	+	371	24378536	-	SMU.06	-	translation-associated GTPase
5	 30.70	-1	4663..5232	+	189	24378537	pth	SMU.07	-	peptidyl-tRNA hydrolase
6	 31.81	-1	5234..8722	+	1162	24378538	trcF	SMU.08	-	putative transcription-repair coupling factor
7	 30.40	-1	8852..9124	+	90	24378539	-	SMU.09	-	hypothetical protein
8	 27.42	-2	9111..9482	+	123	24378540	-	SMU.10	-	hypothetical protein
9	 24.17	-2	9482..9601	+	39	24378541	-	SMU.11	-	hypothetical protein
10	 31.69	-1	9632..10846	+	404	24378542	-	SMU.12	-	hypothetical protein
11	 30.42	-1	10843..12114	+	423	24378543	-	SMU.13	-	putative cell-cycle protein
12	 33.70	0	12118..12660	+	180	24378544	hprT	SMU.14	-	hypoxanthine-guanine phosphoribosyltransferase
13	 38.15	0	12682..14652	+	656	24378545	ftsH	SMU.15	-	putative cell division protein FtsH
14	 33.12	-1	15140..16555	+	471	24378546	-	SMU.16	-	putative amino acid permease
15	 38.41	0	16624..16761	+	45	24378547	-	SMU.18	-	hypothetical protein
16	 31.73	-1	23655..24464	+	269	24378548	mreC	SMU.20	-	putative cell shape-determining protein MreC
17	 25.44	-2	24466..24972	+	168	24378549	mreD	SMU.21	-	putative cell shape-determining protein MreD
18	 41.44	+1	25082..26377	+	431	24378550	gbpB	SMU.22	-	putative secreted antigen GbpB/SagA; putative peptidoglycan hydrolase
19	 36.33	0	26502..27470	+	322	24378551	prs	SMU.23	-	ribose-phosphate pyrophosphokinase
20	 36.90	0	27559..28734	+	391	24378552	-	SMU.24	-	aromatic amino acid aminotransferase
21	 32.01	-1	28724..29479	+	251	24378553	recO	SMU.25	-	DNA repair protein RecO
22	 38.44	0	29687..30685	+	332	24378554	plsX	SMU.26	-	putative glycerol-3-phosphate acyltransferase PlsX
23	 34.14	0	30687..30935	+	82	24378555	acpP	SMU.27	-	acyl carrier protein
24	 37.97	0	31163..31744	+	193	24378556	-	SMU.28	-	putative ATP-binding protein
25	 34.60	0	31867..32574	+	235	24378557	-	SMU.29	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
26	 43.64	+1	32584..36309	+	1241	24378558	purL	SMU.30	-	putative phosphoribosylformylglycinamidine synthase, (FGAM synthase)
27	 30.60	-1	36331..36951	+	206	24378559	-	SMU.31	-	hypothetical protein
28	 45.28	+2	36977..38416	+	479	24378560	purF	SMU.32	-	amidophosphoribosyltransferase
29	 32.98	-1	38633..38914	+	93	24378561	-	SMU.33	-	hypothetical protein
30	 47.41	+2	38960..39982	+	340	24378562	purM	SMU.34	-	phosphoribosylaminoimidazole synthetase
31	 44.50	+1	39982..40536	+	184	24378563	purN	SMU.35	-	phosphoribosylglycinamide formyltransferase
32	 37.43	0	40643..41350	+	235	24378564	-	SMU.36	-	hypothetical protein
33	 46.51	+2	41377..42939	+	520	24378565	purH	SMU.37	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
34	 37.75	0	43122..43664	-	180	24378566	-	SMU.38c	-	putative transcriptional regulator
35	 35.10	0	43832..44341	+	169	24378567	-	SMU.39	-	hypothetical protein
36	 40.12	0	44518..44679	+	53	24378568	-	SMU.40	-	hypothetical protein
37	 34.31	0	44663..44764	+	33	24378569	-	SMU.41	-	hypothetical protein
38	 33.22	0	44831..45709	+	292	24378570	-	SMU.42	-	hypothetical protein
39	 29.06	-2	45781..47160	+	459	24378571	-	SMU.43	-	putative site-specific DNA-methyltransferase restriction-modification protein
40	 32.35	-1	47171..47782	+	203	24378572	-	SMU.44	-	DNA mismatch repair protein
41	 28.84	-2	47969..49570	+	533	24378573	-	SMU.45	-	hypothetical protein
42	 27.20	-2	49572..50207	+	211	24378574	-	SMU.46	-	hypothetical protein
43	 27.59	-2	50207..50815	+	202	24378575	-	SMU.47	-	hypothetical protein
44	 51.11	+2	51039..52298	+	419	24378576	purD	SMU.48	-	phosphoribosylamine--glycine ligase
45	 39.93	0	52358..53539	+	393	24378577	-	SMU.49	-	hypothetical protein
46	 52.15	+2	53862..54350	+	162	24378578	purE	SMU.50	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
47	 51.37	+2	54337..55428	+	363	24378579	purK	SMU.51	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
48	 31.23	-1	55428..56093	+	221	24378580	-	SMU.52	-	hypothetical protein
49	 42.59	+1	56109..56324	+	71	24378581	-	SMU.53	-	hypothetical protein
50	 46.32	+2	56331..57023	+	230	24378582	-	SMU.54	-	putative amino acid recemase
51	 37.12	0	57125..57388	+	87	24378583	-	SMU.55	-	hypothetical protein
52	 34.11	0	57408..57536	+	42	24378584	-	SMU.56	-	hypothetical protein
53	 28.24	-2	57639..58934	+	431	24378585	-	SMU.58	-	hypothetical protein
54	 49.04	+2	59244..60542	+	432	24378586	purB	SMU.59	-	adenylosuccinate lyase
55	 41.48	+1	60562..61248	+	228	24378587	-	SMU.60	-	DNA alkylation repair enzyme
56	 33.22	0	61631..62545	+	304	24378588	-	SMU.61	-	putative transcriptional regulator
57	 39.63	0	63079..64920	-	613	24378589	-	SMU.63c	-	hypothetical protein
58	 41.55	+1	65217..66251	+	344	24378590	ruvB	SMU.64	-	Holliday junction DNA helicase B
59	 38.97	0	66289..66714	+	141	24378591	-	SMU.65	-	putative protein tyrosine-phosphatase
60	 36.20	0	66779..67162	+	127	24378592	-	SMU.66	-	hypothetical protein
61	 37.74	0	67159..68949	+	596	24378593	-	SMU.67	-	putative acyltransferase
62	 41.03	+1	69215..69292	+	25	24378594	-	SMU.68	-	hypothetical protein
63	 38.92	0	69631..71115	+	494	24378595	thrC	SMU.70	-	threonine synthase
64	 38.00	0	71523..72872	+	449	24378596	-	SMU.71	-	putative cation efflux pump (multidrug resistance protein)
65	 36.33	0	73231..73497	+	88	161486825	-	SMU.72	-	hypothetical protein
66	 43.65	+1	73517..74854	+	445	24378598	-	SMU.73	-	hypothetical protein
67	 40.51	0	74927..75637	+	236	24378599	-	SMU.74	-	hypothetical protein
68	 38.13	0	75621..76370	+	249	24378600	-	SMU.75	-	putative D-alanyl-D-alanine carboxypeptidase
69	 36.73	0	76374..76961	+	195	24378601	-	SMU.76	-	putative N-acetyl-muramidase
70	 39.40	0	77576..81847	+	1423	24378602	fruA	SMU.78	-	fructan hydrolase; exo-beta-D-fructosidase; fructanase, FruA
71	 36.92	0	81918..83477	+	519	24378603	fruB	SMU.79	-	fructan hydrolase; exo-beta-D-fructosidase; FruB
72	 36.81	0	83652..84686	+	344	24378604	hrcA	SMU.80	-	heat-inducible transcription repressor
73	 40.74	0	84729..85268	+	179	24378605	grpE	SMU.81	-	heat shock protein GrpE (HSP-70 cofactor)
74	 40.62	0	85642..87480	+	612	24378606	dnaK	SMU.82	-	molecular chaperone DnaK
75	 41.89	+1	88008..89141	+	377	24378607	dnaJ	SMU.83	-	heat shock protein DnaJ (HSP-40)
76	 40.93	0	89443..90192	+	249	24378608	truA	SMU.84	-	tRNA pseudouridine synthase A
77	 38.41	0	90182..90949	+	255	24378609	thiD	SMU.85	-	phosphomethylpyrimidine kinase
78	 37.20	0	90936..91400	+	154	24378610	-	SMU.86	-	hypothetical protein
79	 42.73	+1	91445..92008	+	187	24378611	-	SMU.87	-	hypothetical protein
80	 36.83	0	92179..93036	-	285	24378612	-	SMU.88c	-	mechanosensitive ion channel
81	 37.04	0	93254..94063	-	269	24378613	-	SMU.89c	-	putative nitrite transporter
82	 38.24	0	94301..95584	+	427	24378614	tig	SMU.91	-	trigger factor
83	 39.13	0	95724..95861	-	45	24378615	-	SMU.92c	-	putative putative transposase
84	 43.24	+1	95980..96090	-	36	24378616	-	SMU.93c	-	putative putative transposase
85	 38.60	0	96291..96461	-	56	24378617	-	SMU.94c	-	putative putative transposase
86	 36.75	0	97086..97670	+	194	161486824	rpoE	SMU.96	-	DNA-directed RNA polymerase subunit delta
87	 39.11	0	97804..99414	+	536	24378619	pyrG	SMU.97	-	CTP synthetase
88	 40.36	0	100574..101455	+	293	24378620	fbaA	SMU.99	-	fructose-bisphosphate aldolase
89	 32.11	-1	101780..102271	+	163	24378621	-	SMU.100	-	putative sorbose PTS system, IIB component
90	 33.96	0	102284..103081	+	265	24378622	-	SMU.101	-	putative sorbose PTS system, IIC component
91	 34.55	0	103071..103892	+	273	24378623	-	SMU.102	-	putative PTS system, IID component
92	 33.57	0	103889..104305	+	138	24378624	-	SMU.103	-	putative PTS system, IIA component
93	 34.65	0	104305..106500	+	731	24378625	-	SMU.104	-	putative alpha-glucosidase; glycosyl hydrolase
94	 34.23	0	106501..107499	+	332	24378626	-	SMU.105	-	putative transcriptional regulator; repressor of sugar transport operon
95	 45.57	+2	107734..107970	-	78	24378627	-	SMU.106c	-	putative putative transposase
96	 21.64	-2	109108..109278	+	56	24378628	-	SMU.107	-	hypothetical protein
97	 28.99	-2	109280..109417	+	45	24378629	-	SMU.108	-	hypothetical protein
98	 32.43	-1	109582..110682	+	366	24378630	-	SMU.109	-	permease (efflux protein)
99	 29.62	-1	110824..111684	-	286	24378631	mutR	SMU.110	-	putative transcriptional regulator MutR
100	 34.80	0	111945..112694	-	249	24378632	-	SMU.112c	-	putative transcriptional regulator
37.10	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.