IslandPath Analysis: Trichodesmium erythraeum IMS101



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.03   STD DEV: 4.32
Trichodesmium erythraeum IMS101, complete genome - 1..7750108
4451 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.55	0	27..1397	+	456	113473943	dnaA	Tery_0001	-	chromosomal replication initiation protein
2	 26.37	-2	1489..1689	-	66	113473944	-	Tery_0002	-	IS630 family transposase
3	 40.14	0	9478..9756	-	92	113473945	-	Tery_0006	-	hypothetical protein
4	 34.66	0	10371..10973	+	200	113473946	-	Tery_0008	-	DNA polymerase III, beta subunit
5	 33.93	0	11838..12341	-	167	113473947	-	Tery_0010	-	putative transposase
6	 28.23	-1	12895..15912	+	1005	113473948	-	Tery_0011	-	hypothetical protein
7	 29.09	-1	17126..20872	+	1248	113473949	-	Tery_0012	-	helicase-like
8	 38.05	0	21246..22433	-	395	113473950	-	Tery_0013	-	arsenite-activated ATPase ArsA
9	 35.62	0	22680..23072	-	130	113473951	-	Tery_0014	-	hypothetical protein
10	 29.00	-1	23799..24329	-	176	113473952	-	Tery_0015	-	pentapeptide repeat-containing protein
11	 33.71	0	24984..25247	-	87	113473953	-	Tery_0017	-	hypothetical protein
12	 42.53	+1	25441..27636	-	731	113473954	-	Tery_0018	-	Rho termination factor-like
13	 39.98	0	28954..30639	+	561	113473955	-	Tery_0019	-	dihydroxy-acid dehydratase
14	 30.83	-1	31434..32471	-	345	113473956	-	Tery_0020	-	transposase
15	 36.17	0	33065..35353	+	762	113473957	-	Tery_0021	-	FHA modulated glycosyl transferase/transpeptidase
16	 28.37	-1	36830..38158	+	442	113473958	-	Tery_0022	-	tetratricopeptide TPR_2
17	 29.73	-1	39907..40488	+	193	113473959	-	Tery_0023	-	tetratricopeptide TPR_2
18	 31.60	-1	40836..41411	+	191	113473960	-	Tery_0024	-	hypothetical protein
19	 31.46	-1	41475..41900	+	141	113473961	-	Tery_0025	-	hypothetical protein
20	 41.33	+1	45501..48125	-	874	113473962	-	Tery_0027	-	DNA topoisomerase I
21	 40.12	0	48918..49433	+	171	113473963	-	Tery_0028	-	hypothetical protein
22	 33.93	0	54556..55059	+	167	113473964	-	Tery_0031	-	putative transposase
23	 34.57	0	55816..56544	+	242	113473965	-	Tery_0033	-	hypothetical protein
24	 33.59	0	56599..56982	-	127	113473966	-	Tery_0034	-	hypothetical protein
25	 31.92	0	57894..58106	-	70	113473967	-	Tery_0035	-	hypothetical protein
26	 34.78	0	59088..59294	+	68	113473968	-	Tery_0037	-	IS630 family transposase
27	 33.93	0	59829..60332	-	167	113473969	-	Tery_0039	-	putative transposase
28	 35.00	0	63117..63416	-	99	113473970	-	Tery_0040	-	hypothetical protein
29	 33.33	0	64428..64763	+	111	113473971	-	Tery_0041	-	hypothetical protein
30	 41.71	+1	66565..67806	-	413	113473972	argJ	Tery_0043	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
31	 40.72	+1	68747..70330	-	527	113473973	-	Tery_0045	-	glycoside hydrolase family protein
32	 37.09	0	71135..71347	+	70	113473974	-	Tery_0046	-	hypothetical protein
33	 36.94	0	71367..72836	+	489	113473975	-	Tery_0047	-	hypothetical protein
34	 27.61	-1	73445..73846	-	133	113473976	-	Tery_0049	-	hypothetical protein
35	 36.14	0	73849..74169	+	106	113473977	-	Tery_0050	-	hypothetical protein
36	 26.67	-2	74354..74533	+	59	113473978	-	Tery_0051	-	hypothetical protein
37	 33.93	0	75227..75730	-	167	113473979	-	Tery_0053	-	putative transposase
38	 32.15	0	76285..76875	+	196	113473980	-	Tery_0054	-	signal transduction protein
39	 32.75	0	77526..78212	+	228	113473981	-	Tery_0056	-	hypothetical protein
40	 30.60	-1	78349..81126	+	925	113473982	-	Tery_0057	-	heat domain-containing protein
41	 33.01	0	81365..81982	-	205	113473983	-	Tery_0058	-	pentapeptide repeat-containing protein
42	 38.77	0	82492..84570	-	692	113473984	-	Tery_0059	-	WD-40 repeat-containing serine/threonin protein kinase
43	 34.64	0	84932..85924	+	330	113473985	-	Tery_0060	-	putative sulfite oxidase subunit YedY
44	 24.09	-2	90562..90864	-	100	113473986	-	Tery_0064	-	hypothetical protein
45	 33.86	0	92566..92754	-	62	113473987	-	Tery_0065	-	transposase
46	 27.14	-2	92879..93088	-	69	113473988	-	Tery_0066	-	hypothetical protein
47	 40.48	+1	94221..94430	+	69	113473989	-	Tery_0068	-	hypothetical protein
48	 39.77	0	94683..96173	+	496	113473990	-	Tery_0069	-	leucyl aminopeptidase
49	 41.55	+1	96964..97182	-	72	113473991	-	Tery_0070	-	hypothetical protein
50	 38.48	0	98280..99698	+	472	113473992	-	Tery_0071	-	isocitrate dehydrogenase
51	 31.30	-1	100518..101846	+	442	113473993	-	Tery_0072	-	HEAT repeat-containing PBS lyase
52	 40.10	0	102724..103299	-	191	113473994	-	Tery_0073	-	hypothetical protein
53	 32.97	0	105037..105312	-	91	113473995	-	Tery_0075	-	hypothetical protein
54	 29.22	-1	105879..106097	-	72	113473996	-	Tery_0076	-	hypothetical protein
55	 30.14	-1	106852..107070	-	72	113473997	-	Tery_0077	-	hypothetical protein
56	 30.14	-1	107825..108043	-	72	113473998	-	Tery_0078	-	hypothetical protein
57	 30.14	-1	108798..109016	-	72	113473999	-	Tery_0079	-	hypothetical protein
58	 34.29	0	109771..110394	-	207	113474000	-	Tery_0080	-	hypothetical protein
59	 31.73	0	110607..111539	-	310	113474001	-	Tery_0081	-	putative lipid kinase
60	 31.94	0	113289..115082	-	597	113474002	-	Tery_0082	-	metallophosphoesterase
61	 30.30	-1	115731..115994	-	87	113474003	-	Tery_0084	-	hypothetical protein
62	 30.67	-1	116114..116977	+	287	113474004	-	Tery_0085	-	sulfotransferase
63	 43.86	+1	119376..121190	+	604	113474005	-	Tery_0087	-	aspartate kinase
64	 30.44	-1	122033..123379	-	448	113474006	-	Tery_0088	-	serine/threonine kinase protein
65	 32.72	0	124516..125490	+	324	113474007	-	Tery_0089	-	hypothetical protein
66	 34.07	0	125895..127244	+	449	113474008	-	Tery_0090	-	hypothetical protein
67	 27.85	-1	127898..128116	+	72	113474009	-	Tery_0091	-	hypothetical protein
68	 27.92	-1	129597..129836	+	79	113474010	-	Tery_0093	-	hypothetical protein
69	 35.13	0	130201..130701	+	166	113474011	-	Tery_0094	-	hypothetical protein
70	 31.22	-1	131093..131992	+	299	113474012	-	Tery_0096	-	methyltransferase type 12
71	 38.79	0	132007..133308	-	433	113474013	-	Tery_0097	-	amino acid permease-associated region
72	 32.15	0	135778..138564	+	928	113474014	-	Tery_0100	-	Na-Ca exchanger/integrin-beta4
73	 41.27	+1	139424..139738	-	104	113474015	-	Tery_0102	-	hypothetical protein
74	 35.77	0	140161..140898	-	245	113474016	-	Tery_0103	-	Pirin-like
75	 39.07	0	141415..142320	-	301	113474017	-	Tery_0104	-	vitamin K epoxide reductase
76	 33.71	0	146668..146931	+	87	113474018	-	Tery_0107	-	hypothetical protein
77	 37.27	0	147658..148572	+	304	113474019	-	Tery_0108	-	Ap4A phosphorylase II
78	 38.79	0	149231..150202	-	323	113474020	-	Tery_0109	-	protochlorophyllide oxidoreductase
79	 34.81	0	151332..151466	-	44	113474021	-	Tery_0111	-	hypothetical protein
80	 26.67	-2	151879..152058	-	59	113474022	-	Tery_0112	-	hypothetical protein
81	 32.66	0	154460..154756	-	98	113474023	-	Tery_0114	-	hypothetical protein
82	 33.86	0	155085..157763	-	892	113474024	-	Tery_0115	-	glycosyl transferase family protein
83	 40.00	0	158094..158963	-	289	113474025	-	Tery_0116	-	TPR repeat-containing protein
84	 41.29	+1	159122..163132	-	1336	113474026	-	Tery_0117	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
85	 34.47	0	163385..163648	+	87	113474027	-	Tery_0118	-	hypothetical protein
86	 33.93	0	164262..164930	-	222	113474028	-	Tery_0119	-	hypothetical protein
87	 30.14	-1	165274..166119	-	281	113474029	-	Tery_0120	-	sulfotransferase
88	 30.01	-1	166446..167438	-	330	113474030	-	Tery_0121	-	methyltransferase type 12
89	 33.35	0	167483..177388	-	3301	113474031	-	Tery_0122	-	glycosyl transferase, group 1
90	 37.90	0	178603..180135	-	510	113474032	-	Tery_0124	-	hypothetical protein
91	 34.40	0	180459..181211	-	250	113474033	-	Tery_0125	-	ABC transporter related
92	 32.43	0	181654..182427	-	257	113474034	-	Tery_0127	-	ABC transporter related
93	 32.15	0	182421..183602	-	393	113474035	-	Tery_0128	-	inner-membrane translocator
94	 30.84	-1	184247..185407	-	386	113474036	-	Tery_0129	-	inner-membrane translocator
95	 35.06	0	186490..187761	-	423	113474037	-	Tery_0130	-	extracellular ligand-binding receptor
96	 41.40	+1	188512..188796	-	94	113474038	-	Tery_0131	-	hypothetical protein
97	 34.48	0	189570..193661	-	1363	113474039	cobN	Tery_0132	-	cobaltochelatase
98	 31.57	-1	194505..195692	-	395	113474040	-	Tery_0133	-	hypothetical protein
99	 29.79	-1	196262..197389	+	375	113474041	-	Tery_0134	-	hypothetical protein
100	 30.93	-1	197382..197672	+	96	113474042	-	Tery_0135	-	hypothetical protein
36.03	MEAN

4.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.