IslandPath Analysis: Legionella pneumophila str. Corby



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.58   STD DEV: 3.46
Legionella pneumophila str. Corby, complete genome - 1..3576470
3206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.53	0	655..2013	+	452	148358140	dnaA	LPC_0001	-	chromosomal replication initiator protein DnaA
2	 35.60	0	2027..3130	+	367	148358141	dnaN	LPC_0002	-	DNA polymerase III beta chain
3	 35.31	0	3127..4188	+	353	148358142	recF	LPC_0003	-	DNA recombination and repair protein ATPase RecF
4	 39.33	0	4485..6902	+	805	148358143	gyrB	LPC_0004	-	DNA gyrase, subunit B
5	 38.78	0	7266..8312	-	348	148358144	-	LPC_0005	-	peptidylarginine deiminase
6	 39.25	0	8309..10201	-	630	148358145	speA	LPC_0006	-	arginine decarboxylase
7	 43.03	+1	10221..11066	-	281	148358146	-	LPC_0007	-	amidohydrolase
8	 36.78	0	11535..11621	+	28	148358147	-	LPC_0008	-	hypothetical protein
9	 39.68	0	11607..12866	-	419	148358148	-	LPC_0009	-	hypothetical protein
10	 38.37	0	13054..13311	+	85	148358149	hfq	LPC_0010	-	host factor-I protein for bacteriophage Q beta replication
11	 43.53	+1	13339..14583	+	414	148358150	hflX	LPC_0011	-	GTP binding protein HflX
12	 37.37	0	14688..15158	-	156	148358151	resA	LPC_0012	-	thiol-disulfide oxidoreductase ResA
13	 41.57	0	15327..16904	-	525	148358152	-	LPC_0013	-	hypothetical protein
14	 41.19	0	17050..17889	+	279	148358153	-	LPC_0014	-	pirin-like protein
15	 40.84	0	18326..19537	+	403	148358154	-	LPC_0015	-	alpha-beta hydrolase superfamily esterase
16	 35.85	0	19639..20712	+	357	148358155	-	LPC_0016	-	multidrug resistance protein
17	 34.83	-1	20687..21619	+	310	148358156	-	LPC_0017	-	hypothetical protein
18	 38.85	0	21604..22509	+	301	148358157	-	LPC_0018	-	hypothetical protein
19	 37.53	0	22493..23899	+	468	148358158	-	LPC_0019	-	outer membrane efflux protein
20	 37.98	0	24125..25801	+	558	148358159	-	LPC_0020	-	hemagglutinin/protease, zinc metalloprotease
21	 38.60	0	26021..26932	+	303	148358160	-	LPC_0021	-	integral membrane protein
22	 38.12	0	27124..27603	+	159	148358161	-	LPC_0022	-	hypothetical protein
23	 38.98	0	27600..29723	+	707	148358162	-	LPC_0023	-	23S rRNA m(2)G2445 methyltransferase
24	 38.12	0	29793..30335	-	180	148358163	-	LPC_0024	-	hypothetical protein
25	 40.61	0	30482..30907	-	141	148358164	-	LPC_0025	-	hypothetical protein
26	 43.28	+1	31047..31619	-	190	148358165	-	LPC_0026	-	palmitoyl transferase for Lipid A
27	 39.87	0	31779..33170	+	463	148358166	-	LPC_0027	-	amino acid transporter
28	 42.47	+1	33180..34175	-	331	148358167	pit	LPC_0028	-	low affinity inorganic phosphate transporter
29	 42.68	+1	34192..34833	-	213	148358168	-	LPC_0029	-	ubiquinone biosynthesis protein COQ7
30	 36.55	0	35068..37986	+	972	148358169	rre41	LPC_0030	-	sensory box regulatory protein
31	 39.06	0	38086..38976	-	296	148358170	-	LPC_0031	-	hypothetical protein
32	 38.94	0	39035..40228	-	397	148358171	-	LPC_0032	-	leucine aminopeptidase
33	 41.03	0	40290..41315	-	341	148358172	-	LPC_0033	-	hypothetical protein
34	 37.12	0	41681..42340	+	219	148358173	-	LPC_0034	-	hypothetical protein
35	 31.43	-2	42324..42428	-	34	148358174	-	LPC_0035	-	hypothetical protein
36	 35.01	-1	42586..42942	+	118	148358175	-	LPC_0036	-	hypothetical protein
37	 37.90	0	43005..43727	-	240	148358176	-	LPC_0037	-	hypothetical protein
38	 34.27	-1	43941..44684	-	247	148358177	artJ	LPC_0038	-	arginine 3rd transport system periplasmic binding protein
39	 39.13	0	44846..46363	-	505	148358178	-	LPC_0039	-	hypothetical protein
40	 31.47	-2	46626..47108	+	160	148358179	-	LPC_0040	-	hypothetical protein
41	 39.36	0	47130..48125	-	331	148358180	-	LPC_0041	-	integral membrane protein
42	 40.15	0	48359..50545	+	728	148358181	-	LPC_0042	-	hypothetical protein
43	 36.47	0	50558..51259	+	233	148358182	-	LPC_0043	-	hypothetical protein
44	 42.19	+1	51328..51519	-	63	148358183	-	LPC_0044	-	hypothetical protein
45	 36.35	0	51574..52434	-	286	148358184	-	LPC_0045	-	hypothetical protein
46	 44.73	+1	52611..52847	-	78	148358185	-	LPC_0046	-	hypothetical protein
47	 33.80	-1	53050..53262	-	70	148358186	-	LPC_0047	-	hypothetical protein
48	 35.09	-1	53472..53870	+	132	148358187	-	LPC_0048	-	hypothetical protein
49	 34.07	-1	53905..54039	+	44	148358188	-	LPC_0049	-	hypothetical protein
50	 38.91	0	54069..54731	+	220	148358189	-	LPC_0050	-	chloramphenicol acetyltransferase
51	 40.50	0	54728..55606	+	292	148358190	-	LPC_0051	-	acetyltransferase
52	 42.67	+1	55659..56954	+	431	148358191	-	LPC_0052	-	amino acid transporter, permease
53	 34.23	-1	57022..57132	+	36	148358192	-	LPC_0053	-	hypothetical protein
54	 35.95	0	57171..57323	-	50	148358193	-	LPC_0054	-	hypothetical protein
55	 35.82	0	57598..58080	-	160	148358194	-	LPC_0055	-	hypothetical protein
56	 25.71	-2	58111..58215	-	34	148358195	-	LPC_0056	-	hypothetical protein
57	 42.95	+1	58293..59186	-	297	148358196	prpB	LPC_0057	-	2-methylisocitrate lyase
58	 32.82	-1	59300..59494	-	64	148358197	-	LPC_0058	-	hypothetical protein
59	 38.91	0	59495..60229	-	244	148358198	-	LPC_0059	-	transferase enzyme
60	 37.87	0	60219..60923	-	234	148358199	-	LPC_0060	-	hypothetical protein
61	 38.83	0	61029..61937	+	302	148358200	-	LPC_0061	-	LysR family transcriptional regulator
62	 41.73	0	62082..62819	+	245	148358201	-	LPC_0062	-	hypothetical protein
63	 35.04	-1	62956..63954	+	332	148358202	-	LPC_0063	-	hypothetical protein
64	 42.75	+1	64230..64505	+	91	148358203	-	LPC_0064	-	hypothetical protein
65	 39.98	0	64639..65886	+	415	148358204	-	LPC_0065	-	SdbB protein
66	 34.81	-1	66192..66596	-	134	148358205	-	LPC_0066	-	putative regulator
67	 39.11	0	66666..67409	+	247	148358206	-	LPC_0067	-	hypothetical protein
68	 43.57	+1	67713..68699	+	328	148358207	-	LPC_0068	-	hypothetical protein
69	 39.16	0	68705..69013	-	102	148358208	-	LPC_0069	-	hypothetical protein
70	 34.75	-1	69153..69647	+	164	148358209	-	LPC_0070	-	hypothetical protein
71	 31.48	-2	69739..69900	+	53	148358210	-	LPC_0071	-	hypothetical protein
72	 35.93	0	69902..71443	+	513	148358211	-	LPC_0072	-	signaling protein
73	 39.18	0	71496..71957	+	153	148358212	-	LPC_0073	-	hypothetical protein
74	 32.24	-1	72300..72482	+	60	148358213	-	LPC_0074	-	hypothetical protein
75	 33.33	-1	72590..73261	+	223	148358214	-	LPC_0075	-	methylase
76	 32.49	-1	73291..74469	+	392	148358215	-	LPC_0076	-	multidrug resistance protein
77	 33.57	-1	74470..75741	-	423	148358216	-	LPC_0077	-	hypothetical protein
78	 35.60	0	75983..77173	+	396	148358217	aroH	LPC_0078	-	phospho-2-dehydro-3-deoxyheptonate aldolase
79	 33.44	-1	77278..78204	+	308	148358218	-	LPC_0079	-	hypothetical protein
80	 36.30	0	78222..79031	+	269	148358219	-	LPC_0080	-	hypothetical protein
81	 35.71	0	79048..80352	+	434	148358220	-	LPC_0081	-	phosphoribosylglycinamide synthetase ATP-grasp domain-containing protein
82	 34.69	-1	80373..80963	+	196	148358221	-	LPC_0082	-	hypothetical protein
83	 34.49	-1	80947..81894	+	315	148358222	-	LPC_0083	-	transmembrane protein
84	 37.57	0	81994..82371	+	125	148358223	-	LPC_0084	-	transposase (IS652)
85	 40.85	0	82602..83825	+	407	148358224	-	LPC_0085	-	integrase, phage related
86	 39.51	0	83909..84232	+	107	148358225	-	LPC_0086	-	hypothetical protein
87	 36.84	0	84229..84513	+	94	148358226	-	LPC_0087	-	hypothetical protein
88	 39.71	0	84695..85510	+	271	148358227	-	LPC_0088	-	LvrA
89	 43.86	+1	85642..85812	-	56	148358228	-	LPC_0089	-	hypothetical protein
90	 37.65	0	86285..87697	-	470	148358229	-	LPC_0090	-	hypothetical protein
91	 30.54	-2	87728..88336	-	202	148358230	-	LPC_0091	-	hypothetical protein
92	 46.06	+2	88581..89759	-	392	148358231	aatA	LPC_0093	-	aspartate aminotransferase A
93	 42.97	+1	89806..91797	+	663	148358232	uvrB	LPC_0094	-	excinuclease ABC subunit B
94	 36.49	0	92152..93765	+	537	148358233	-	LPC_0095	-	diguanylate cyclase/phosphodiesterase
95	 40.14	0	93856..95427	-	523	148358234	-	LPC_0096	-	glutamate synthase
96	 30.48	-2	95505..95819	-	104	148358235	-	LPC_0097	-	hypothetical protein
97	 41.58	0	95975..96556	+	193	148358236	-	LPC_0098	-	hypothetical protein
98	 42.94	+1	96661..97971	+	436	148358237	-	LPC_0099	-	hypothetical protein
99	 42.56	+1	97961..99163	+	400	148358238	ubiH	LPC_0100	-	2-octaprenyl-6-methoxyphenol hydroxylase
100	 42.25	+1	99160..100326	+	388	148358239	-	LPC_0101	-	2-polyprenyl-6-methoxyphenol hydroxylase
38.58	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.