IslandPath Analysis: Mycobacterium vanbaalenii PYR-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.94   STD DEV: 3.09
Mycobacterium vanbaalenii PYR-1, complete genome - 1..6491865
5979 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.65	-1	249..1733	+	494	120401029	dnaA	Mvan_0001	-	chromosomal replication initiation protein
2	 66.83	0	2309..3505	+	398	120401030	-	Mvan_0002	-	DNA polymerase III subunit beta
3	 64.88	0	3537..4430	+	297	120401031	-	Mvan_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 66.32	0	4444..5604	+	386	120401032	recF	Mvan_0004	-	recombination protein F
5	 72.76	+1	5601..6158	+	185	120401033	-	Mvan_0005	-	hypothetical protein
6	 64.20	-1	6390..8417	+	675	120401034	gyrB	Mvan_0006	-	DNA gyrase subunit B
7	 64.40	-1	8449..12237	+	1262	120401035	-	Mvan_0007	-	DNA gyrase, A subunit
8	 72.19	+1	12238..13143	+	301	120401036	-	Mvan_0008	-	hypothetical protein
9	 69.23	0	13523..13717	-	64	120401037	-	Mvan_0009	-	hypothetical protein
10	 69.38	0	13823..14485	-	220	120401038	-	Mvan_0010	-	two component LuxR family transcriptional regulator
11	 69.91	0	14567..15862	+	431	120401039	-	Mvan_0011	-	integral membrane sensor signal transduction histidine kinase
12	 66.98	0	16015..17283	+	422	120401040	-	Mvan_0012	-	cytochrome P450
13	 67.83	0	17306..18424	+	372	120401041	-	Mvan_0013	-	alcohol dehydrogenase
14	 68.58	0	18488..20005	+	505	120401042	-	Mvan_0014	-	betaine-aldehyde dehydrogenase
15	 66.54	0	20015..21550	+	511	120401043	-	Mvan_0015	-	acyl-CoA synthetase
16	 71.72	+1	21673..22107	-	144	120401044	-	Mvan_0016	-	hypothetical protein
17	 64.18	-1	22179..22742	+	187	120401045	-	Mvan_0017	-	peptidylprolyl isomerase
18	 66.67	0	22791..23213	-	140	120401046	-	Mvan_0018	-	hypothetical protein
19	 59.93	-2	23369..23650	-	93	120401047	-	Mvan_0019	-	putative septation inhibitor protein
20	 69.11	0	23716..24534	+	272	120401048	-	Mvan_0020	-	hypothetical protein
21	 69.99	0	24746..25918	+	390	120401049	-	Mvan_0021	-	hypothetical protein
22	 67.11	0	25953..26627	+	224	120401050	-	Mvan_0022	-	para-aminobenzoate synthase component II
23	 69.38	0	26605..28482	-	625	120401051	-	Mvan_0023	-	protein kinase
24	 70.61	0	28479..29771	-	430	120401052	-	Mvan_0024	-	protein kinase
25	 68.56	0	29875..31350	-	491	120401053	-	Mvan_0025	-	penicillin-binding protein, transpeptidase
26	 65.04	0	31347..32759	-	470	120401054	-	Mvan_0026	-	cell cycle protein
27	 70.27	0	32756..34309	-	517	120401055	-	Mvan_0027	-	protein phosphatase 2C domain-containing protein
28	 66.07	0	34306..34812	-	168	120401056	-	Mvan_0028	-	FHA domain-containing protein
29	 69.71	0	34934..36346	-	470	120401057	-	Mvan_0029	-	FHA domain-containing protein
30	 62.90	-1	36837..37739	-	300	120401058	-	Mvan_0030	-	hypothetical protein
31	 62.89	-1	37736..38185	-	149	120401059	-	Mvan_0031	-	hypothetical protein
32	 64.84	-1	38210..39631	-	473	120401060	-	Mvan_0032	-	Fis family transcriptional regulator
33	 68.01	0	39801..41663	+	620	120401061	-	Mvan_0033	-	hypothetical protein
34	 63.55	-1	41676..43310	+	544	120401062	-	Mvan_0034	-	N-6 DNA methylase
35	 58.60	-2	43303..44505	+	400	120401063	-	Mvan_0035	-	hypothetical protein
36	 65.84	0	44554..45648	+	364	120401064	-	Mvan_0036	-	hypothetical protein
37	 63.59	-1	45645..48830	+	1061	120401065	-	Mvan_0037	-	HsdR family type I site-specific deoxyribonuclease
38	 60.98	-2	49139..49930	-	263	120401066	-	Mvan_0038	-	excinuclease ABC subunit C
39	 62.72	-1	50159..50842	-	227	120401067	-	Mvan_0039	-	hypothetical protein
40	 68.65	0	51521..52831	+	436	120401068	-	Mvan_0040	-	hypothetical protein
41	 66.53	0	52968..54452	-	494	120401069	-	Mvan_0041	-	hypothetical protein
42	 69.71	0	54714..56093	-	459	120401070	-	Mvan_0042	-	purine catabolism PurC domain-containing protein
43	 67.42	0	56236..57687	+	483	120401071	-	Mvan_0043	-	amino acid permease-associated region
44	 71.28	+1	57680..58372	+	230	120401072	-	Mvan_0044	-	short-chain dehydrogenase/reductase SDR
45	 69.80	0	58369..59133	+	254	120401073	-	Mvan_0045	-	short-chain dehydrogenase/reductase SDR
46	 69.88	0	59149..60114	+	321	120401074	-	Mvan_0046	-	putative agmatinase
47	 68.51	0	60111..60977	+	288	120401075	-	Mvan_0047	-	polysaccharide deacetylase
48	 68.32	0	60981..61526	-	181	120401076	-	Mvan_0048	-	hypothetical protein
49	 69.32	0	61510..63393	-	627	120401077	-	Mvan_0049	-	hypothetical protein
50	 68.44	0	63451..63675	-	74	120401078	-	Mvan_0050	-	hypothetical protein
51	 69.06	0	63824..65200	-	458	120401079	-	Mvan_0051	-	magnesium transporter
52	 68.80	0	65387..66511	+	374	120401080	-	Mvan_0052	-	hypothetical protein
53	 70.29	0	66641..67330	-	229	120401081	-	Mvan_0053	-	hydrolase
54	 71.33	+1	67327..68442	-	371	120401082	-	Mvan_0054	-	FAD dependent oxidoreductase
55	 70.33	0	68533..69078	+	181	120401083	-	Mvan_0055	-	HD phosphohydrolase-like
56	 67.67	0	69075..69773	+	232	120401084	-	Mvan_0056	-	UbiC transcription regulator-associated domain-containing protein
57	 72.11	+1	69811..70416	+	201	120401085	-	Mvan_0057	-	hypothetical protein
58	 66.67	0	70432..70644	-	70	120401086	-	Mvan_0058	-	hypothetical protein
59	 64.66	-1	70740..71237	+	165	120401087	-	Mvan_0059	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
60	 71.75	+1	71234..72040	-	268	120401088	-	Mvan_0060	-	hypothetical protein
61	 65.79	0	72059..72400	-	113	120401089	-	Mvan_0061	-	hypothetical protein
62	 71.12	+1	72409..73374	-	321	120401090	-	Mvan_0062	-	pirin domain-containing protein
63	 75.97	+2	73415..73801	-	128	120401091	-	Mvan_0063	-	hypothetical protein
64	 64.84	-1	73869..74306	-	145	120401092	-	Mvan_0064	-	hypothetical protein
65	 67.41	0	74390..74659	+	89	120401093	-	Mvan_0065	-	hypothetical protein
66	 71.92	+1	74652..76211	+	519	120401094	-	Mvan_0066	-	propionyl-CoA carboxylase
67	 68.71	0	76386..76679	-	97	120401095	-	Mvan_0067	-	transcription factor WhiB
68	 72.20	+1	77024..77764	+	246	120401096	-	Mvan_0068	-	hypothetical protein
69	 70.08	0	77748..78920	-	390	120401097	-	Mvan_0069	-	hypothetical protein
70	 68.08	0	79338..80189	+	283	120401098	-	Mvan_0070	-	hypothetical protein
71	 67.46	0	80207..80713	+	168	120401099	-	Mvan_0071	-	hypothetical protein
72	 67.36	0	80710..82434	+	574	120401100	-	Mvan_0072	-	ATPase central domain-containing protein
73	 68.68	0	82438..83925	+	495	120401101	-	Mvan_0073	-	hypothetical protein
74	 67.16	0	83922..86144	+	740	120401102	-	Mvan_0074	-	cell divisionFtsK/SpoIIIE
75	 67.23	0	86144..87904	+	586	120401103	-	Mvan_0075	-	cell divisionFtsK/SpoIIIE
76	 69.02	0	88073..88369	+	98	120401104	-	Mvan_0076	-	PE-like protein
77	 68.18	0	88399..89718	+	439	120401105	-	Mvan_0077	-	PPE protein
78	 64.38	-1	89821..90126	+	101	120401106	-	Mvan_0078	-	10 kDa culture filtrate antigen LHP (CFP10)
79	 63.12	-1	90169..90450	+	93	120401107	-	Mvan_0079	-	6 kDa early secretory antigenic target EsaT6 (EsaT-6)
80	 67.91	0	90551..91918	+	455	120401108	-	Mvan_0080	-	hypothetical protein
81	 66.80	0	91915..93441	+	508	120401109	-	Mvan_0081	-	hypothetical protein
82	 68.19	0	93451..94170	+	239	120401110	-	Mvan_0082	-	hypothetical protein
83	 68.91	0	94167..94478	+	103	120401111	-	Mvan_0083	-	hypothetical protein
84	 69.65	0	94479..95549	-	356	120401112	-	Mvan_0084	-	hypothetical protein
85	 66.62	0	95565..97766	-	733	120401113	-	Mvan_0085	-	hypothetical protein
86	 59.46	-2	97769..98962	-	397	120401114	-	Mvan_0086	-	hypothetical protein
87	 61.20	-2	99179..99544	-	121	120401115	-	Mvan_0087	-	hypothetical protein
88	 62.56	-1	99755..101167	-	470	120401116	-	Mvan_0088	-	hypothetical protein
89	 64.64	-1	101172..101516	-	114	120401117	-	Mvan_0089	-	hypothetical protein
90	 71.96	+1	101516..103141	-	541	120401118	-	Mvan_0090	-	hypothetical protein
91	 68.31	0	103173..104570	-	465	120401119	-	Mvan_0091	-	hypothetical protein
92	 69.41	0	104567..105913	-	448	120401120	-	Mvan_0092	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
93	 70.16	0	106149..106406	-	85	120401121	-	Mvan_0093	-	phosphotransferase system, phosphocarrier protein HPr
94	 70.02	0	106439..108409	-	656	120401122	-	Mvan_0094	-	PTS system, fructose subfamily, IIC subunit
95	 72.49	+1	108433..109410	-	325	120401123	-	Mvan_0095	-	ribokinase-like domain-containing protein
96	 70.26	0	109407..110186	-	259	120401124	-	Mvan_0096	-	DeoR family transcriptional regulator
97	 71.13	+1	110199..111989	+	596	120401125	-	Mvan_0097	-	phosphoenolpyruvate-protein phosphotransferase
98	 70.42	0	111986..112225	-	79	120401126	-	Mvan_0098	-	hypothetical protein
99	 69.54	0	112316..113290	+	324	120401127	-	Mvan_0099	-	pirin domain-containing protein
100	 72.30	+1	113294..115441	-	715	120401128	-	Mvan_0100	-	membrane protein-like protein
67.94	MEAN

3.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.