IslandPathversion 1.0

IslandPath Analysis: Bacillus thuringiensis serovar konkukian str. 97-27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.52 STD DEV: 3.51
Bacillus thuringiensis serovar konkukian str. 97-27, complete genome - 1..5237682
5117 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.42	0	409..1749	+	446	49479264	dnaA	BT9727_0001	-	chromosomal replication initiation protein
2	 32.28	0	1928..3067	+	379	49476685	dnaN	BT9727_0002	-	DNA polymerase III subunit beta
3	 35.11	0	3183..3407	+	74	49479933	-	BT9727_0003	-	hypothetical protein
4	 34.49	0	3420..4547	+	375	49477032	recF	BT9727_0004	-	recombination protein F
5	 37.03	0	4586..6508	+	640	49476686	gyrB	BT9727_0005	-	DNA gyrase subunit B
6	 36.53	0	6597..9068	+	823	49476687	gyrA	BT9727_0006	-	DNA gyrase subunit A
7	 34.33	0	14358..15359	-	333	49476688	-	BT9727_0008	-	hypothetical protein
8	 39.00	0	15475..16938	+	487	49476689	guaB	BT9727_0009	-	inositol-5-monophosphate dehydrogenase
9	 35.46	0	17043..18359	+	438	49478184	dacA	BT9727_0010	-	serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine carboxypeptidase)
10	 42.91	+2	18521..19408	+	295	49476690	pdx1	BT9727_0011	-	pyridoxine biosynthesis protein
11	 40.44	+1	19427..20017	+	196	49479020	guaA	BT9727_0012	-	glutamine amidotransferase subunit PdxT
12	 38.43	0	20345..21619	+	424	49478185	serS	BT9727_0013	-	seryl-tRNA synthetase
13	 34.42	0	21876..22427	+	183	49476691	-	BT9727_0014	-	hypothetical protein
14	 36.02	0	22463..23131	-	222	49476692	dck	BT9727_0015	-	deoxynucleoside kinase
15	 34.59	0	23134..23769	-	211	49476693	dgk	BT9727_0016	-	deoxyguanosine kinase
16	 30.93	-1	23895..24434	-	179	49479021	pncA	BT9727_0017	-	nicotinamidase (pyrazinamidase)
17	 36.93	0	24542..25042	+	166	49481561	-	BT9727_0018	-	cytidine/deoxycytidylate deaminase family protein
18	 39.31	+1	25519..27207	+	562	49476694	dnaX	BT9727_0019	-	DNA polymerase III subunits gamma and tau
19	 36.97	0	27230..27559	+	109	49476695	-	BT9727_0020	-	hypothetical protein
20	 39.36	+1	27574..28170	+	198	49478186	recR	BT9727_0021	-	recombination protein RecR
21	 32.88	0	28185..28406	+	73	49476696	-	BT9727_0022	-	hypothetical protein
22	 31.48	-1	28622..28891	+	89	49479331	bofA	BT9727_0023	-	sigma-K factor processing regulatory protein
23	 34.88	0	34566..35987	+	473	49480016	cad	BT9727_0025	-	lysine decarboxylase
24	 36.20	0	35989..36615	+	208	49480017	tdk	BT9727_0026	-	thymidylate kinase
25	 37.09	0	36651..37634	+	327	49480023	holB	BT9727_0027	-	DNA polymerase III subunit delta'
26	 36.32	0	37631..38467	+	278	49481560	-	BT9727_0028	-	signal peptidase-like protein
27	 33.06	0	38467..38832	+	121	49479031	-	BT9727_0029	-	DNA replication intiation control protein YabA
28	 34.28	0	38953..39693	+	246	49479032	-	BT9727_0030	-	methyltransferase
29	 34.36	0	39680..39970	+	96	49476697	-	BT9727_0031	-	GIY-YIG nuclease superfamily protein
30	 34.82	0	39939..40814	+	291	49481556	-	BT9727_0032	-	uroporphyrin-III C-methyltransferase
31	 34.04	0	40835..41119	-	94	49479324	-	BT9727_0033	-	transition state transcriptional regulatory protein
32	 36.21	0	41610..43592	+	660	49477589	metG	BT9727_0034	-	methionyl-tRNA synthetase
33	 37.63	0	43758..44525	+	255	49477127	tatD	BT9727_0035	-	TatD related DNase
34	 37.63	0	44740..45297	+	185	49479932	rnmV	BT9727_0036	-	ribonuclease M5
35	 36.06	0	45294..46172	+	292	49477600	ksgA	BT9727_0037	-	dimethyladenosine transferase
36	 37.38	0	46283..47146	+	287	49480336	-	BT9727_0038	-	sporulation-specific protease
37	 36.78	0	47385..47645	+	86	49478532	veg	BT9727_0039	-	veg protein
38	 38.34	0	48104..48982	+	292	49479996	ispE	BT9727_0040	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
39	 37.22	0	49037..49885	+	282	49479993	purR	BT9727_0041	-	purine operon repressor
40	 35.20	0	50008..50382	+	124	49479991	purR	BT9727_0042	-	pur operon repressor
41	 40.48	+1	50535..50828	+	97	161761261	spoVG	BT9727_0043	-	regulatory protein SpoVG
42	 38.26	0	51153..52532	+	459	49476699	gcaD	BT9727_0044	-	UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase)
43	 37.11	0	52551..53504	+	317	49477325	prs	BT9727_0045	-	ribose-phosphate pyrophosphokinase
44	 34.76	0	53577..54137	+	186	49481760	spoVC	BT9727_0046	-	peptidyl-tRNA hydrolase
45	 32.89	0	54208..54432	+	74	49476700	-	BT9727_0047	-	hypothetical protein
46	 35.62	0	54532..58068	+	1178	49479988	mfd	BT9727_0048	-	transcription-repair coupling factor
47	 36.13	0	58205..58741	+	178	49476701	spoVT	BT9727_0049	-	stage V sporulation protein T
48	 34.83	0	58972..60573	+	533	49479931	-	BT9727_0050	-	integral membrane protein; stage V sporulation protein B
49	 37.30	0	60586..62046	+	486	49480333	-	BT9727_0051	-	fused tetrapyrrole methylase domain/nucleotide pyrophosphohydrolase domain-containing protein
50	 32.61	0	62061..62336	+	91	49479938	hslR	BT9727_0052	-	heat shock protein 15
51	 34.25	0	62377..62703	+	108	49476702	-	BT9727_0053	-	hypothetical protein
52	 32.42	0	62700..63353	+	217	49480881	-	BT9727_0054	-	hypothetical protein
53	 33.61	0	63350..63709	+	119	49479326	divIC	BT9727_0055	-	cell division protein DIVIC
54	 42.44	+1	63797..64279	+	160	49479983	-	BT9727_0056	-	hypothetical protein
55	 36.92	0	64903..67329	+	808	49481740	spoIIE	BT9727_0057	-	serine/threonine specific protein phosphatase; stage II sporulation protein E
56	 36.41	0	67563..68993	+	476	49476703	mesJ	BT9727_0058	-	cell cycle protein
57	 34.81	0	68990..69532	+	180	49479325	hprT	BT9727_0059	-	hypoxanthine-guanine phosphoribosyltransferase
58	 40.12	+1	69618..71519	+	633	49476704	ftsH	BT9727_0060	-	cell division protein
59	 38.28	0	71744..72532	+	262	49479330	-	BT9727_0061	-	pantothenate kinase
60	 39.73	+1	72539..73414	+	291	49479980	hslO	BT9727_0062	-	Hsp33-like chaperonin
61	 39.83	+1	73519..74442	+	307	49479972	cysK	BT9727_0063	-	cysteine synthase
62	 38.13	0	74663..76060	+	465	49479971	pabB	BT9727_0064	-	para-aminobenzoate synthase component I
63	 40.31	+1	76066..76653	+	195	49479967	pabA	BT9727_0065	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
64	 35.40	0	76647..77519	+	290	49479966	pabC	BT9727_0066	-	4-amino-4-deoxychorismate lyase
65	 39.15	+1	77512..78354	+	280	49479965	sul	BT9727_0067	-	dihydropteroate synthase (DHPS) (dihydropteroate pyrophosphorylase)
66	 36.36	0	78355..78717	+	120	49479958	folB	BT9727_0068	-	dihydroneopterin aldolase
67	 34.11	0	78714..79229	+	171	49478206	folK	BT9727_0069	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro-6-hydroxymethylpterin)
68	 39.22	+1	79181..79384	+	67	49479321	-	BT9727_0070	-	transcriptional regulator
69	 39.24	+1	79408..80406	+	332	49481554	-	BT9727_0071	-	NifR3 family TIM-barrel protein
70	 36.80	0	80566..82065	+	499	49481679	lysS	BT9727_0072	-	lysyl-tRNA synthetase
71	 33.12	0	93143..93604	+	153	49479948	ctsR	BT9727_0075	-	transcriptional regulator
72	 35.88	0	93778..94326	+	182	49481553	-	BT9727_0076	-	UvrB/UvrC protein
73	 34.74	0	94331..95395	+	354	49479316	karG	BT9727_0077	-	ATP:guanido phosphotransferase
74	 39.16	+1	95418..97853	+	811	49481552	clpC	BT9727_0078	-	negative regulator of genetic competence clpC/mecB (ATP-dependent Clp protease)
75	 39.58	+1	97950..99326	+	458	49479310	radA	BT9727_0079	-	DNA repair protein RadA
76	 37.43	0	99330..100403	+	357	49476705	-	BT9727_0080	-	DNA integrity scanning protein DisA
77	 35.23	0	100564..101673	+	369	49479305	-	BT9727_0081	-	hypothetical protein
78	 39.21	+1	101690..102370	+	226	49479302	ispD	BT9727_0082	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
79	 37.74	0	102485..102961	+	158	49479298	ispF	BT9727_0083	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
80	 36.97	0	103051..104508	+	485	49476707	gltX	BT9727_0084	-	glutamyl-tRNA synthetase
81	 37.39	0	104941..105606	+	221	49476708	cysE	BT9727_0085	-	serine O-acetyltransferase
82	 36.70	0	105587..106984	+	465	49481691	cysS	BT9727_0086	-	cysteinyl-tRNA synthetase
83	 38.24	0	106987..107394	+	135	49479930	-	BT9727_0087	-	hypothetical protein
84	 37.50	0	107391..108134	+	247	49476710	-	BT9727_0088	-	tRNA/rRNA methyltransferase SpoU
85	 37.62	0	108138..108650	+	170	49479929	-	BT9727_0089	-	hypothetical protein
86	 36.07	0	108718..109374	+	218	49476711	spo0H	BT9727_0090	-	RNA polymerase factor sigma-70
87	 38.54	0	109688..109879	+	63	49476712	secE	BT9727_0091	-	preprotein translocase subunit SecE
88	 37.64	0	109998..110531	+	177	49476713	nusG	BT9727_0092	-	transcription antitermination protein NusG
89	 42.96	+2	110699..111124	+	141	49479292	rplK	BT9727_0093	-	50S ribosomal protein L11
90	 40.84	+1	111301..111993	+	230	49479291	rplA	BT9727_0094	-	50S ribosomal protein L1
91	 40.92	+1	112226..112726	+	166	49479290	rplJ	BT9727_0095	-	50S ribosomal protein L10
92	 39.17	+1	112794..113153	+	119	49479289	rplL	BT9727_0096	-	50S ribosomal protein L7/L12
93	 38.67	0	113230..113829	+	199	49476714	-	BT9727_0097	-	methyltransferase
94	 41.77	+1	114123..117656	+	1177	49479286	rpoB	BT9727_0098	-	DNA-directed RNA polymerase subunit beta
95	 40.39	+1	117694..121305	+	1203	49479285	rpoC	BT9727_0099	-	DNA-directed RNA polymerase subunit beta'
96	 36.88	0	121386..121667	+	93	49476715	-	BT9727_0100	-	hypothetical protein
97	 40.43	+1	121782..122204	+	140	49476716	rpsL	BT9727_0101	-	30S ribosomal protein S12
98	 42.46	+1	122234..122704	+	156	49479282	rpsG	BT9727_0102	-	30S ribosomal protein S7
99	 42.47	+1	122912..124990	+	692	49478969	fusA	BT9727_0103	-	elongation factor G
100	 43.86	+2	125108..126295	+	395	49479276	tuf	BT9727_0104	-	elongation factor Tu
35.52	MEAN

3.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.