IslandPath Analysis: Clavibacter michiganensis subsp. sepedonicus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.30   STD DEV: 4.16
Clavibacter michiganensis subsp. sepedonicus, complete genome - 1..3258645
2941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.13	-1	1..1431	+	476	170780463	dnaA	CMS_0001	-	chromosomal replication initiator protein DnaA
2	 68.18	0	1939..3129	+	396	170780464	dnaN	CMS_0002	-	DNA polymerase III, beta chain
3	 69.57	0	3140..4102	-	320	170780465	-	CMS_0003	-	putative insertion element IS1121 transposase
4	 69.03	0	4224..5111	+	295	170780466	-	CMS_0004	-	putative 6-phosphogluconate dehydrogenase
5	 72.13	0	5119..6345	+	408	170780467	-	CMS_0005	-	DNA replication protein
6	 72.12	0	6342..6854	+	170	170780468	-	CMS_0006	-	hypothetical protein
7	 67.12	-1	7095..9089	+	664	170780469	-	CMS_0007	-	DNA gyrase subunit B
8	 68.77	0	9172..11832	+	886	170780470	-	CMS_0008	-	DNA gyrase subunit A
9	 63.73	-2	11825..12232	+	135	170780471	-	CMS_0009	-	putative integral membrane protein
10	 71.05	0	12684..13322	-	212	170780472	-	CMS_0010	-	putative integral membrane protein
11	 66.67	-1	13432..13971	+	179	170780473	cypB	CMS_0011	-	putative peptidyl-prolyl cis-trans isomerase
12	 70.49	0	13971..14834	+	287	170780474	yggP	CMS_0012	-	rhomboid family membrane protein
13	 64.58	-1	15229..15468	-	79	170780475	-	CMS_0013	-	putative integral membrane protein
14	 70.91	0	15550..16374	+	274	170780476	srtA	CMS_0014	-	sortase
15	 65.41	-1	16377..16535	+	52	170780477	-	CMS_0015	-	hypothetical protein
16	 70.27	0	16532..17170	+	212	170780478	-	CMS_0016	-	putative glutamine amidotransferase
17	 72.21	0	17264..19012	-	582	170780479	-	CMS_0017	-	putative serine/threonine protein kinase
18	 73.41	0	19147..21045	-	632	170780480	pknA	CMS_0018	-	serine/threonine kinase
19	 69.63	0	21042..22493	-	483	170780481	-	CMS_0019	-	putative secreted penicillin-binding protein
20	 69.38	0	22490..23815	-	441	170780482	-	CMS_0020	-	FtsW/RodA/SpoVE family cell cycle protein
21	 73.00	0	23880..25142	-	420	170780483	-	CMS_0021	-	putative protein phosphatase
22	 72.16	0	25147..25728	-	193	170780484	-	CMS_0022	-	putative secreted protein
23	 72.81	0	25725..26456	-	243	170780485	-	CMS_0023	-	hypothetical protein
24	 69.26	0	29064..30026	-	320	170780486	-	CMS_0025	-	putative insertion element IS1121 transposase
25	 75.25	0	30197..30883	+	228	170780487	-	CMS_0026	-	putative two-component system response regulator
26	 77.09	+1	30897..32057	+	386	170780488	-	CMS_0027	-	putative two-component system sensor kinase
27	 75.77	0	32088..32669	-	193	170780489	-	CMS_0028	-	putative integral membrane protein
28	 65.85	-1	32763..32885	-	40	170780490	-	CMS_0029	-	putative ribosomal protein L36
29	 77.87	+1	32960..34003	+	347	170780491	-	CMS_0030	-	hypothetical protein
30	 75.04	0	34092..35954	+	620	170780492	recQ	CMS_0031	-	ATP-dependent DNA helicase RecQ
31	 73.15	0	36065..37267	-	400	170780493	-	CMS_0032	-	putative serine protease
32	 66.96	-1	37602..41009	+	1135	170780494	-	CMS_0033	-	putative sortase-processed secreted protein
33	 54.90	-2	41006..41209	+	67	170780495	-	CMS_0034	-	putative integral membrane protein
34	 52.27	-2	41571..41702	-	43	170780496	-	CMS_0035	-	putative integral membrane protein
35	 73.61	0	42106..42321	+	71	170780497	-	CMS_0036	-	putative integral membrane protein
36	 69.26	0	42745..43707	-	320	170780498	-	CMS_0038	-	putative insertion element IS1121 transposase
37	 68.12	-1	43805..44287	-	160	170780499	mscL	CMS_0039	-	putative mechanosensitive channel
38	 72.22	0	44284..44643	-	119	170780500	-	CMS_0040	-	putative integral mebrane protein
39	 69.97	0	44742..45317	-	191	170780501	-	CMS_0041	-	putative 5-formyltetrahydrofolate cyclo-ligase-related protein
40	 69.34	0	45358..46254	+	298	170780502	galU	CMS_0042	-	UTP-glucose-1-phosphate uridylyltransferase
41	 70.55	0	46312..46980	+	222	170780503	-	CMS_0043	-	putative GCN5-related N-acetyltransferase
42	 76.37	0	47079..48047	+	322	170780504	-	CMS_0044	-	putative integral membrane protein
43	 76.54	+1	50014..51633	+	539	170780505	-	CMS_0047	-	hypothetical protein
44	 75.96	0	51727..52038	+	103	170780506	-	CMS_0048	-	transmembrane protein
45	 71.69	0	52058..52495	-	145	170780507	-	CMS_0049	-	hypothetical protein
46	 73.55	0	52615..53616	+	333	170780508	-	CMS_0050	-	LacI family transcriptional regulator
47	 70.00	0	53732..55081	+	449	170780509	-	CMS_0051	-	putative extracellular solute-binding protein
48	 67.72	-1	55177..56121	+	314	170780510	-	CMS_0052	-	putative integral membrane binding-protein-dependent transport protein
49	 68.08	-1	56118..57038	+	306	170780511	-	CMS_0053	-	putative integral membrane binding-protein-dependent transport protein
50	 71.15	0	57121..58659	+	512	170780512	abfA	CMS_0054	-	alpha-L-arabinofuranosidase
51	 67.44	-1	58824..60116	+	430	170780513	-	CMS_0055	-	putative insertion element ISCmi3 transposase
52	 72.38	0	60153..62114	+	653	170780514	-	CMS_0056	-	putative helicase
53	 75.12	0	62529..64538	+	669	170780515	-	CMS_0057	-	hypothetical protein
54	 68.27	0	64811..66367	+	518	170780516	-	CMS_0058	-	putative extracellular solute-binding protein
55	 72.27	0	66371..67333	+	320	170780517	-	CMS_0059	-	oligopeptide transport integral membrane protein
56	 69.69	0	67330..68322	+	330	170780518	-	CMS_0060	-	oligopeptide transport system integral membrane protein
57	 71.51	0	68319..69185	+	288	170780519	-	CMS_0061	-	putative ABC transporter ATP-binding subunit
58	 74.25	0	69182..70117	+	311	170780520	-	CMS_0062	-	putative ABC transporter ATP-binding protein
59	 74.31	0	70114..71421	+	435	170780521	pip	CMS_0063	-	putative prolyl aminopeptidase
60	 75.91	0	71418..72878	+	486	170780522	-	CMS_0064	-	putative Xaa-Pro aminopeptidase II
61	 75.70	0	72898..74955	+	685	170780523	-	CMS_0065	-	GntR family transcriptional regulator
62	 80.17	+1	75098..76978	+	626	170780524	-	CMS_0066	-	putative secreted oxidase
63	 72.00	0	76975..77892	+	305	170780525	-	CMS_0067	-	putative dihydropicolinate synthase
64	 71.96	0	77900..78901	+	333	170780526	-	CMS_0068	-	putative proline racemase
65	 78.37	+1	78928..80439	+	503	170780527	-	CMS_0069	-	putative aldehyde dehydrogenase
66	 73.52	0	80666..82897	+	743	170780528	-	CMS_0070	-	putative acyl CoA oxidase
67	 64.71	-1	82980..83849	-	289	170780529	-	CMS_0071	-	putative peptidase
68	 75.71	0	84014..84544	-	176	170780530	-	CMS_0072	-	hypothetical protein
69	 68.97	0	84650..84997	-	115	170780531	-	CMS_0073	-	putative PemK-like protein
70	 67.46	-1	84991..85242	-	83	170780532	-	CMS_0074	-	putative DNA-binding protein
71	 73.89	0	85313..86101	-	262	170780533	-	CMS_0075	-	hypothetical protein
72	 73.13	0	86215..87189	+	324	170780534	-	CMS_0076	-	putative proline iminopeptidase
73	 70.48	0	87259..87756	-	165	170780535	gct	CMS_0077	-	putative glycerol-3-phosphate cytidyltransferase
74	 74.30	0	88135..90780	+	881	170780536	-	CMS_0078	-	putative sortase-sorted surface protein
75	 75.93	0	91133..93754	+	873	170780537	-	CMS_0079	-	putative sortase-sorted surface protein
76	 72.91	0	94101..95654	+	517	170780538	-	CMS_0080	-	putative glycosyl transferase
77	 72.05	0	95654..96898	+	414	170780539	-	CMS_0081	-	putative glycosyl transferase
78	 72.82	0	96895..97707	+	270	170780540	-	CMS_0082	-	putative glycosyl transferase
79	 76.73	+1	97704..98945	+	413	170780541	-	CMS_0083	-	putative glycosyl transferase
80	 69.06	0	104728..105690	+	320	170780542	-	CMS_0086	-	putative insertion element IS1121 transposase
81	 74.25	0	105701..107005	-	434	170780543	-	CMS_0087	-	putative sugar hydrolase
82	 73.94	0	107245..108303	+	352	170780544	-	CMS_0088	-	putative lipoprotein
83	 74.07	0	108350..109159	-	269	170780545	-	CMS_0089	-	putative integral membrane protein
84	 78.79	+1	109249..109776	+	175	170780546	-	CMS_0090	-	MarR family transcriptional regulator
85	 75.84	0	109773..110513	+	246	170780547	-	CMS_0091	-	hypothetical protein
86	 72.88	0	110574..112409	-	611	170780548	-	CMS_0092	-	putative glycosyl hydrolase
87	 76.59	+1	112656..113189	+	177	170780549	-	CMS_0093	-	hypothetical protein
88	 70.86	0	114004..115314	+	436	170780550	-	CMS_0094	-	putative secreted peptidase
89	 73.70	0	115316..116722	+	468	170780551	-	CMS_0095	-	putative secreted peptidase
90	 68.18	0	116846..117373	-	175	170780552	-	CMS_0096	-	putative inorganic pyrophosphatase
91	 78.27	+1	117428..118453	+	341	170780553	-	CMS_0097	-	hypothetical protein
92	 68.66	0	118455..119006	+	183	170780554	-	CMS_0098	-	putative hypoxanthine phosphoribosyltransferase
93	 69.62	0	119164..121164	+	666	170780555	-	CMS_0099	-	cell division protein ftsH-like protein
94	 77.33	+1	121170..121760	+	196	170780556	-	CMS_0100	-	putative GTP cyclohydrolase I
95	 76.48	+1	121757..122632	+	291	170780557	-	CMS_0101	-	putative dihydropteroate synthase
96	 76.23	0	122637..123347	+	236	170780558	-	CMS_0102	-	hypothetical protein
97	 77.06	+1	123341..124264	+	307	170780559	-	CMS_0103	-	bifunctional folate synthesis protein
98	 76.40	0	124261..124743	+	160	170780560	-	CMS_0104	-	putative integral membrane protein
99	 75.05	0	124794..125282	+	162	170780561	-	CMS_0105	-	putative integral membrane protein
100	 76.47	+1	125279..127144	+	621	170780562	-	CMS_0106	-	putative integral membrane protein
72.30	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.