IslandPath Analysis: Clostridium kluyveri DSM 555



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.50   STD DEV: 5.18
Clostridium kluyveri DSM 555, complete genome - 1..3964618
3838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.79	0	1..1356	+	451	153952671	dnaA	CKL_0001	-	chromosomal replication initiation protein
2	 26.27	-1	1615..2718	+	367	153952672	dnaN	CKL_0002	-	DNA polymerase III subunit beta
3	 28.99	0	2746..2952	+	68	153952673	-	CKL_0003	-	hypothetical protein
4	 23.01	-1	3033..4127	+	364	153952674	recF	CKL_0004	-	recombination protein F
5	 26.52	-1	4147..4410	+	87	153952675	-	CKL_0005	-	hypothetical protein
6	 32.18	0	4432..6345	+	637	153952676	gyrB1	CKL_0006	-	DNA gyrase subunit B
7	 31.19	0	6362..8782	+	806	153952677	gyrA1	CKL_0007	-	DNA gyrase subunit A
8	 21.26	-2	14825..15238	+	137	153952678	-	CKL_0013	-	hypothetical protein
9	 27.33	0	15394..15909	+	171	153952679	-	CKL_0014	-	transcriptional regulator
10	 26.45	-1	15946..18660	+	904	153952680	-	CKL_0015	-	hypothetical protein
11	 26.16	-1	18709..20103	+	464	153952681	-	CKL_0016	-	hypothetical protein
12	 25.86	-1	20121..20468	+	115	153952682	-	CKL_0017	-	hypothetical protein
13	 31.30	0	20840..22120	+	426	153952683	serS	CKL_0018	-	seryl-tRNA synthetase
14	 34.87	0	22722..22916	-	64	153952684	-	CKL_0021	-	recombinase-related protein
15	 39.63	+1	23060..23758	+	232	153952685	vanR	CKL_0022	-	VanR
16	 37.58	0	23748..24902	+	384	153952686	vanS	CKL_0023	-	VanS
17	 32.48	0	24959..25663	-	234	153952687	-	CKL_0024	-	VanZ-related protein
18	 37.19	0	25943..26875	+	310	153952688	-	CKL_0025	-	D-alanyl-D-alanine carboxypeptidase precursor
19	 23.56	-1	27197..27370	+	57	153952689	-	CKL_0026	-	hypothetical protein
20	 35.56	0	27578..28027	+	149	153952690	-	CKL_0027	-	hypothetical protein
21	 34.78	0	28448..29626	-	392	153952691	-	CKL_0028	-	transposase
22	 32.90	0	29947..30411	+	154	153952692	-	CKL_0029	-	hypothetical protein
23	 30.09	0	30542..31405	-	287	153952693	-	CKL_0030	-	hydrolase
24	 21.64	-2	31565..31735	-	56	153952694	-	CKL_0031	-	transposase
25	 32.41	0	32455..33747	+	430	153952695	-	CKL_0032	-	hypothetical protein
26	 27.81	0	33889..34359	-	156	153952696	-	CKL_0033	-	hypothetical protein
27	 29.76	0	35287..36546	+	419	153952697	-	CKL_0035	-	hypothetical protein
28	 28.51	0	36738..37463	+	241	153952698	-	CKL_0036	-	ABC transporter
29	 25.23	-1	37450..38202	+	250	153952699	-	CKL_0037	-	hypothetical protein
30	 25.26	-1	38216..39652	+	478	153952700	-	CKL_0038	-	sensory transduction histidine kinase
31	 30.58	0	39739..40428	+	229	153952701	-	CKL_0039	-	transcriptional regulator
32	 27.40	0	40564..41625	+	353	153952702	-	CKL_0040	-	hypothetical protein
33	 30.57	0	41741..42607	-	288	153952703	-	CKL_0041	-	hypothetical protein
34	 21.19	-2	42644..43030	-	128	153952704	-	CKL_0042	-	hypothetical protein
35	 29.91	0	43845..44750	+	301	153952705	-	CKL_0043	-	transcriptional regulator
36	 32.37	0	45186..46535	-	449	153952706	-	CKL_0044	-	methylcitrate synthase
37	 30.59	0	46916..47644	-	242	153952707	-	CKL_0045	-	hypothetical protein
38	 28.98	0	47710..48306	-	198	153952708	-	CKL_0046	-	hypothetical protein
39	 33.94	0	48796..50457	+	553	153952709	leuA1	CKL_0047	-	2-isopropylmalate synthase
40	 29.17	0	50554..51057	-	167	153952710	-	CKL_0048	-	acetyltransferase
41	 26.49	-1	51097..51987	-	296	153952711	psd	CKL_0049	-	phosphatidylserine decarboxylase
42	 29.14	0	52191..52763	+	190	153952712	-	CKL_0050	-	transcriptional regulator
43	 25.03	-1	52775..54376	-	533	153952713	-	CKL_0051	-	hypothetical protein
44	 26.73	-1	54407..54709	-	100	153952714	-	CKL_0052	-	hypothetical protein
45	 31.74	0	55121..55558	+	145	153952715	tadA	CKL_0054	-	hypothetical protein
46	 29.52	0	56146..56565	-	139	153952716	-	CKL_0056	-	hypothetical protein
47	 28.79	0	56569..56766	-	65	153952717	-	CKL_0057	-	transcriptional regulator
48	 30.95	0	57973..58518	+	181	153952718	-	CKL_0058	-	hypothetical protein
49	 29.11	0	58618..58854	+	78	153952719	-	CKL_0059	-	hypothetical protein
50	 34.22	0	59148..59711	+	187	153952720	flr	CKL_0060	-	Flr
51	 30.00	0	60074..60253	+	59	153952721	-	CKL_0061	-	hypothetical protein
52	 31.69	0	60371..60553	+	60	153952722	-	CKL_0062	-	hypothetical protein
53	 29.92	0	60906..61169	-	87	153952723	-	CKL_0063	-	hypothetical protein
54	 45.40	+2	61365..61712	-	115	153952724	-	CKL_0064	-	hypothetical protein
55	 41.09	+1	61766..62281	-	171	153952725	-	CKL_0065	-	hypothetical protein
56	 50.19	+2	62299..64932	-	877	153952726	ppsA	CKL_0066	-	phosphoenolpyruvate synthase
57	 31.08	0	65006..65626	-	206	153952727	-	CKL_0067	-	hypothetical protein
58	 35.44	0	65837..66073	-	78	153952728	-	CKL_0068	-	hypothetical protein
59	 39.04	+1	66089..66421	-	110	153952729	-	CKL_0069	-	hypothetical protein
60	 36.27	0	66418..66894	-	158	153952730	-	CKL_0070	-	sigma factor
61	 42.22	+1	66940..67119	-	59	153952731	-	CKL_0071	-	transposase
62	 39.33	+1	67437..69188	-	583	153952732	-	CKL_0072	-	transport protein
63	 38.43	+1	69181..71004	-	607	153952733	-	CKL_0073	-	transport protein
64	 33.51	0	71755..72333	+	192	153952734	-	CKL_0074	-	transposase
65	 32.88	0	72415..72633	+	72	153952735	-	CKL_0075	-	hypothetical protein
66	 31.86	0	72725..73198	+	157	153952736	-	CKL_0076	-	hypothetical protein
67	 35.16	0	73213..73431	+	72	153952737	-	CKL_0077	-	transcriptional regulator
68	 33.33	0	73847..74674	+	275	153952738	-	CKL_0078	-	polyketide methyltransferase
69	 31.69	0	74719..75510	+	263	153952739	-	CKL_0079	-	polyketide methyltransferase
70	 34.71	0	75725..76159	-	144	153952740	-	CKL_0080	-	transcriptional regulator
71	 38.71	+1	76184..77893	-	569	153952741	-	CKL_0081	-	transport protein
72	 34.24	0	78123..79556	-	477	153952742	-	CKL_0082	-	cation transporting ATPase
73	 34.47	0	79652..80002	-	116	153952743	-	CKL_0083	-	cation transporting ATPase
74	 33.69	0	80012..80293	-	93	153952744	-	CKL_0084	-	hypothetical protein
75	 32.57	0	80422..81726	-	434	153952745	apeB	CKL_0085	-	putative aminopeptidase 2
76	 31.98	0	82236..83639	+	467	153952746	-	CKL_0086	-	hypothetical protein
77	 34.89	0	83715..85001	+	428	153952747	purA	CKL_0087	-	adenylosuccinate synthetase
78	 29.20	0	85129..85878	+	249	153952748	-	CKL_0088	-	acyl-acyl carrier protein thioesterase
79	 31.30	0	85892..87121	-	409	153952749	-	CKL_0089	-	flavoprotein
80	 33.33	0	87267..87638	+	123	153952750	-	CKL_0090	-	hypothetical protein
81	 24.52	-1	88574..89560	-	328	153952751	-	CKL_0098	-	DNA replication protein DnaC
82	 27.39	0	89553..90545	-	330	153952752	-	CKL_0099	-	DnaD-related protein
83	 34.27	0	90760..91824	+	354	153952753	-	CKL_0100	-	hypothetical protein
84	 28.51	0	91866..92342	+	158	153952754	-	CKL_0101	-	transcriptional regulator
85	 33.02	0	92335..93306	+	323	153952755	fabH1	CKL_0102	-	FabH1
86	 22.81	-1	93331..93558	+	75	153952756	acp1	CKL_0103	-	Acp1
87	 38.62	+1	93571..94515	+	314	153952757	fabI	CKL_0104	-	FabI
88	 34.61	0	94531..95469	+	312	153952758	fabD	CKL_0105	-	hypothetical protein
89	 33.87	0	95480..96226	+	248	153952759	fabG1	CKL_0106	-	FabG1
90	 37.53	0	96251..97489	+	412	153952760	fabF	CKL_0107	-	3-oxoacyl-(acyl carrier protein) synthase II
91	 29.24	0	97491..98003	+	170	153952761	accB	CKL_0108	-	hypothetical protein
92	 32.89	0	98023..98475	+	150	153952762	fabZ	CKL_0109	-	(3R)-hydroxymyristoyl-ACP dehydratase
93	 34.75	0	98500..99843	+	447	153952763	accC	CKL_0110	-	biotin carboxylase
94	 32.76	0	99964..100839	+	291	153952764	accD	CKL_0111	-	hypothetical protein
95	 34.28	0	100908..101753	+	281	153952765	accA	CKL_0112	-	hypothetical protein
96	 32.94	0	101841..102350	-	169	153952766	ftn	CKL_0113	-	hypothetical protein
97	 33.17	0	102519..103718	-	399	153952767	-	CKL_0114	-	subtilisin related protease
98	 31.25	0	103819..104250	-	143	153952768	-	CKL_0115	-	hypothetical protein
99	 25.00	-1	104386..104865	-	159	153952769	-	CKL_0116	-	hypothetical protein
100	 28.86	0	105174..105419	-	81	153952770	-	CKL_0117	-	hypothetical protein
32.50	MEAN

5.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.