IslandPath Analysis: Wolbachia endosymbiont of Drosophila melanogaster



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.43   STD DEV: 3.58
Wolbachia endosymbiont of Drosophila melanogaster, complete genome - 1..1267782
1195 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.42	0	153..1535	+	460	42519921	dnaA	WD0001	-	chromosomal replication initiation protein
2	 33.52	0	3145..4227	+	360	42519922	ribA	WD0003	-	GTP cyclohydrolase II
3	 30.10	-1	4300..4980	+	226	42519923	-	WD0004	-	type IV secretion system protein VirB8
4	 30.06	-1	4973..5767	+	264	42519924	-	WD0005	-	type IV secretion system protein VirB9
5	 37.03	0	5784..7244	+	486	42519925	-	WD0006	-	type IV secretion system protein VirB10
6	 37.97	0	7246..8238	+	330	42519926	-	WD0007	-	type IV secretion system protein VirB11
7	 36.26	0	8269..10215	+	648	42519927	-	WD0008	-	type IV secretion system protein VirD4
8	 36.87	0	10337..11185	+	282	42519928	-	WD0009	-	surface antigen Wsp paralog
9	 34.88	0	11350..12189	-	279	42519929	-	WD0010	-	HemK family modification methylase
10	 41.48	+1	12529..12663	-	44	42519930	-	WD0012	-	hypothetical protein
11	 36.30	0	12642..12776	+	44	42519931	-	WD0013	-	hypothetical protein
12	 41.07	+1	13302..13676	+	124	42519932	rpsL	WD0014	-	30S ribosomal protein S12
13	 37.92	0	13682..14161	+	159	42519933	rpsG	WD0015	-	30S ribosomal protein S7
14	 36.71	0	14183..16258	+	691	42519934	fusA	WD0016	-	elongation factor G
15	 43.14	+2	16270..17442	+	390	42519935	tuf	WD0017	-	elongation factor Tu
16	 30.48	-1	17539..17748	+	69	42519936	secE	WD0018	-	preprotein translocase subunit SecE
17	 30.12	-1	17984..18574	+	196	42519937	-	WD0019	-	transcription antitermination protein NusG, putative
18	 37.87	0	18577..19017	+	146	42519938	rplK	WD0020	-	50S ribosomal protein L11
19	 32.26	0	19022..19675	+	217	42519939	rplA	WD0021	-	50S ribosomal protein L1
20	 31.98	0	19688..20206	+	172	42519940	rplJ	WD0022	-	50S ribosomal protein L10
21	 35.82	0	20233..20634	+	133	42519941	rplL	WD0023	-	50S ribosomal protein L7/L12
22	 35.76	0	20693..29206	+	2837	42519942	rpoBC	WD0024	-	DNA-directed RNA polymerase, beta/beta' subunits
23	 40.60	+1	29213..30175	-	320	42519943	-	WD0025	-	NifR3 family protein
24	 32.91	0	30201..30677	-	158	42519944	-	WD0026	-	hypothetical protein
25	 36.27	0	30692..31168	-	158	42519945	-	WD0027	-	hypothetical protein
26	 37.56	0	31467..32744	+	425	42519946	serS	WD0028	-	seryl-tRNA synthetase
27	 37.19	0	32779..34050	+	423	42519947	purD	WD0029	-	phosphoribosylamine--glycine ligase
28	 27.78	-2	34458..34565	-	35	42519948	-	WD0031	-	hypothetical protein
29	 33.33	0	34679..34954	-	91	42519949	-	WD0032	-	hypothetical protein
30	 33.10	0	35323..36585	-	420	42519950	-	WD0033	-	hypothetical protein
31	 31.35	-1	36604..37257	-	217	42519951	-	WD0034	-	hypothetical protein
32	 35.99	0	37671..38537	+	288	42519952	-	WD0035	-	ankyrin repeat-containing protein
33	 35.60	0	38841..39767	+	308	42519953	prsA	WD0036	-	ribose-phosphate pyrophosphokinase
34	 33.62	0	39757..40110	+	117	42519954	-	WD0037	-	glutamyl-tRNA(Gln) amidotransferase, C subunit, putative
35	 33.81	0	40152..41414	-	420	42519955	tolB	WD0038	-	translocation protein TolB
36	 37.06	0	41420..43054	-	544	42519956	-	WD0039	-	metallo-beta-lactamase family protein
37	 37.53	0	43264..44382	-	372	42519957	dnaJ	WD0040	-	dnaJ protein
38	 38.36	0	44606..45241	-	211	42519958	-	WD0041	-	hypothetical protein
39	 38.44	0	45767..46177	-	136	42519959	-	WD0042	-	hypothetical protein
40	 33.48	0	46174..46860	-	228	42519960	-	WD0043	-	reverse transcriptase, interruption-C
41	 36.26	0	46857..47198	-	113	42519961	-	WD0044	-	IS5 family transposase OrfB
42	 36.75	0	47309..47689	-	126	42519962	-	WD0045	-	IS5 family transposase OrfA
43	 36.03	0	49261..49668	-	135	42519963	-	WD0047	-	hypothetical protein
44	 34.58	0	51062..51301	-	79	42519964	-	WD0049	-	hypothetical protein
45	 37.98	0	51258..51515	-	85	42519965	-	WD0050	-	transposase, degenerate
46	 32.16	0	51493..51834	+	113	42519966	-	WD0051	-	hypothetical protein
47	 36.87	0	51846..52043	-	65	42519967	-	WD0052	-	hypothetical protein
48	 35.51	0	52111..52752	+	213	42519968	-	WD0053	-	dioxygenase, putative
49	 37.19	0	52849..54351	+	500	42519969	pepA	WD0054	-	leucyl aminopeptidase
50	 35.44	0	55045..56232	+	395	42519970	-	WD0056	-	major facilitator family transporter
51	 31.70	-1	56293..56598	+	101	42519971	-	WD0057	-	HU family DNA-binding protein
52	 33.33	0	56598..56924	+	108	42519972	-	WD0058	-	hypothetical protein
53	 36.30	0	56994..57566	+	190	42519973	nlpD	WD0059	-	M24/M37 family peptidase
54	 37.98	0	57579..60095	+	838	42519974	leuS	WD0060	-	leucyl-tRNA synthetase
55	 38.21	0	60224..60859	+	211	42519975	-	WD0061	-	hypothetical protein
56	 35.29	0	61230..61331	+	33	42519976	-	WD0062	-	hypothetical protein
57	 36.58	0	62503..63210	+	235	42519977	pdxJ	WD0064	-	pyridoxal phosphate biosynthetic protein PdxJ
58	 32.05	0	63203..63514	-	103	42519978	-	WD0065	-	HU family DNA-binding protein
59	 36.40	0	63661..64116	-	151	42519979	rpsI	WD0066	-	30S ribosomal protein S9
60	 35.95	0	64127..64585	-	152	42519980	rplM	WD0067	-	50S ribosomal protein L13
61	 34.15	0	64715..65938	+	407	42519981	-	WD0068	-	outer membrane protein TolC, putative
62	 31.60	-1	65958..66533	+	191	42519982	-	WD0069	-	hypothetical protein
63	 33.51	0	66610..67188	+	192	42519983	-	WD0070	-	ribosomal RNA large subunit methyltransferase J, putative
64	 26.85	-2	67587..67694	-	35	42519984	-	WD0072	-	hypothetical protein
65	 34.71	0	68396..70798	+	800	42519985	-	WD0073	-	ankyrin repeat-containing protein
66	 27.83	-2	70932..71258	+	108	42519986	-	WD0074	-	hypothetical protein
67	 40.86	+1	71248..71340	-	30	42519987	-	WD0075	-	hypothetical protein
68	 35.61	0	71395..71877	+	160	42519988	-	WD0076	-	uncharacterized phage protein, putative
69	 29.93	-1	72249..72659	+	136	42519989	-	WD0077	-	hypothetical protein
70	 30.26	-1	72634..73023	+	129	42519990	-	WD0078	-	hypothetical protein
71	 37.50	0	73059..73874	+	271	42519991	-	WD0079	-	hypothetical protein
72	 42.86	+2	74176..74280	+	34	42519992	-	WD0080	-	hypothetical protein
73	 34.31	0	75578..76705	-	375	42519993	-	WD0082	-	hypothetical protein
74	 31.13	-1	76813..77628	-	271	42519994	-	WD0083	-	hypothetical protein
75	 27.62	-2	77726..77830	+	34	42519995	-	WD0084	-	hypothetical protein
76	 36.39	0	77862..78647	+	261	42519996	fabI	WD0085	-	enoyl-(acyl-carrier-protein) reductase
77	 35.39	0	78664..80169	-	501	42519997	secD	WD0086	-	preprotein translocase subunit SecD
78	 38.45	0	81378..82862	-	494	42519998	guaB	WD0089	-	inosine-5'-monophosphate dehydrogenase
79	 32.29	0	82988..83848	-	286	42519999	ksgA	WD0090	-	dimethyladenosine transferase
80	 33.06	0	83976..84704	+	242	42520000	tpiA	WD0091	-	triosephosphate isomerase
81	 36.36	0	84779..85867	-	362	42520001	dprA	WD0092	-	DNA processing chain A
82	 34.67	0	85929..86303	+	124	42520002	-	WD0093	-	ferredoxin, 4Fe-4S
83	 33.33	0	86633..87280	+	215	42520003	-	WD0094	-	hypothetical protein
84	 33.33	0	87366..88313	+	315	42520004	-	WD0095	-	D-alanine--D-alanine ligase
85	 33.73	0	88294..89052	+	252	42520005	-	WD0096	-	cell division protein FtsQ, putative
86	 34.87	0	90714..91820	+	368	42520006	-	WD0098	-	D-alanyl-D-alanine carboxypeptidase
87	 33.97	0	91920..92234	+	104	42520007	-	WD0099	-	multidrug resistance protein
88	 34.20	0	92251..92595	+	114	42520008	sugE	WD0100	-	sugE protein
89	 40.35	+1	93139..93423	+	94	42520009	-	WD0102	-	hypothetical protein
90	 36.84	0	94147..97287	-	1046	42520010	putA	WD0103	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
91	 37.74	0	97422..100007	-	861	42520011	acnA	WD0105	-	aconitate hydratase
92	 33.33	0	100022..100525	-	167	42520012	secB	WD0106	-	preprotein translocase subunit SecB
93	 29.65	-1	100690..101340	+	216	42520013	-	WD0107	-	hypothetical protein
94	 35.49	0	101358..102053	+	231	42520014	dnaQ	WD0108	-	DNA polymerase III, epsilon subunit
95	 34.81	0	102098..102706	+	202	42520015	-	WD0109	-	SCO1/SenC family protein
96	 43.30	+2	102737..102997	+	86	42520016	-	WD0110	-	hypothetical protein
97	 34.96	0	103297..103419	+	40	42520017	-	WD0111	-	hypothetical protein
98	 34.55	0	103515..105902	+	795	42520018	gyrB	WD0112	-	DNA gyrase, B subunit
99	 50.78	+2	105996..106253	+	85	42520019	-	WD0113	-	hypothetical protein
100	 30.62	-1	107885..109213	+	442	42520020	-	WD0115	-	IS4 family transposase
35.43	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.