IslandPathversion 1.0

IslandPath Analysis: Bacillus weihenstephanensis KBAB4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.66 STD DEV: 3.54
Bacillus weihenstephanensis KBAB4, complete genome - 1..5262775
5155 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.23	0	106..1446	+	446	163938014	-	BcerKBAB4_0001	-	chromosomal replication initiation protein
2	 32.90	0	1629..2774	+	381	163938015	-	BcerKBAB4_0002	-	DNA polymerase III subunit beta
3	 33.80	0	2903..3115	+	70	163938016	-	BcerKBAB4_0003	-	S4 region YaaA family protein
4	 34.40	0	3128..4255	+	375	163938017	-	BcerKBAB4_0004	-	recombination protein F
5	 37.49	0	4294..6216	+	640	163938018	-	BcerKBAB4_0005	-	DNA gyrase subunit B
6	 36.93	0	6305..8776	+	823	163938019	-	BcerKBAB4_0006	-	DNA gyrase subunit A
7	 32.04	-1	14068..15069	-	333	163938020	-	BcerKBAB4_0007	-	hypothetical protein
8	 38.80	0	15185..16648	+	487	163938021	-	BcerKBAB4_0008	-	inositol-5-monophosphate dehydrogenase
9	 35.63	0	16762..18069	+	435	163938022	-	BcerKBAB4_0009	-	Serine-type D-Ala-D-Ala carboxypeptidase
10	 43.36	+2	18229..19116	+	295	163938023	-	BcerKBAB4_0010	-	pyridoxine biosynthesis protein
11	 41.29	+1	19135..19725	+	196	163938024	-	BcerKBAB4_0011	-	glutamine amidotransferase subunit PdxT
12	 38.35	0	20052..21326	+	424	163938025	-	BcerKBAB4_0012	-	seryl-tRNA synthetase
13	 33.80	0	21707..22135	+	142	163938026	-	BcerKBAB4_0013	-	group-specific protein
14	 34.38	0	22171..22839	-	222	163938027	-	BcerKBAB4_0014	-	deoxynucleoside kinase
15	 33.96	0	22842..23477	-	211	163938028	-	BcerKBAB4_0015	-	deoxynucleoside kinase
16	 32.22	0	23601..24140	-	179	163938029	-	BcerKBAB4_0016	-	isochorismatase hydrolase
17	 39.60	+1	24247..24741	+	164	163938030	-	BcerKBAB4_0017	-	CMP/dCMP deaminase zinc-binding
18	 39.25	+1	25217..26905	+	562	163938031	-	BcerKBAB4_0018	-	DNA polymerase III subunits gamma and tau
19	 38.48	0	26928..27257	+	109	163938032	-	BcerKBAB4_0019	-	hypothetical protein
20	 40.37	+1	27272..27868	+	198	163938033	-	BcerKBAB4_0020	-	recombination protein RecR
21	 33.78	0	27883..28104	+	73	163938034	-	BcerKBAB4_0021	-	hypothetical protein
22	 32.59	0	28365..28634	+	89	163938035	-	BcerKBAB4_0022	-	sigmaK-factor processing regulatory BofA
23	 29.44	-1	34065..34244	+	59	163938036	-	BcerKBAB4_0023	-	CsfB protein
24	 36.71	0	34324..35745	+	473	163938037	-	BcerKBAB4_0024	-	Orn/Lys/Arg decarboxylase major region
25	 35.41	0	35747..36373	+	208	163938038	-	BcerKBAB4_0025	-	thymidylate kinase
26	 36.08	0	36409..37392	+	327	163938039	-	BcerKBAB4_0026	-	DNA polymerase III subunit delta'
27	 36.11	0	37398..38225	+	275	163938040	-	BcerKBAB4_0027	-	PSP1 domain-containing protein
28	 32.76	0	38240..38590	+	116	163938041	-	BcerKBAB4_0028	-	DNA replication intiation control protein YabA
29	 34.01	0	38711..39451	+	246	163938042	-	BcerKBAB4_0029	-	methyltransferase
30	 37.11	0	39438..39728	+	96	163938043	-	BcerKBAB4_0030	-	GIY-YIG nuclease superfamily protein
31	 35.62	0	39697..40572	+	291	163938044	-	BcerKBAB4_0031	-	uroporphyrin-III C/tetrapyrrole methyltransferase
32	 33.68	0	40593..40877	-	94	163938045	-	BcerKBAB4_0032	-	AbrB family transcriptional regulator
33	 36.66	0	41399..43381	+	660	163938046	-	BcerKBAB4_0033	-	methionyl-tRNA synthetase
34	 36.59	0	43547..44314	+	255	163938047	-	BcerKBAB4_0034	-	TatD family hydrolase
35	 38.17	0	44575..45132	+	185	163938048	-	BcerKBAB4_0035	-	primase/topoisomerase like protein
36	 35.49	0	45129..46007	+	292	163938049	-	BcerKBAB4_0036	-	dimethyladenosine transferase
37	 36.69	0	46125..46988	+	287	163938050	-	BcerKBAB4_0037	-	peptidase U57 YabG
38	 34.47	0	47227..47490	+	87	163938051	-	BcerKBAB4_0038	-	hypothetical protein
39	 38.89	0	47582..47761	+	59	163938052	-	BcerKBAB4_0039	-	SspF protein
40	 39.66	+1	47958..48827	+	289	163938053	-	BcerKBAB4_0040	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
41	 38.52	0	48882..49730	+	282	163938054	-	BcerKBAB4_0041	-	purine operon repressor
42	 35.73	0	49854..50228	+	124	163938055	-	BcerKBAB4_0042	-	putative endoribonuclease L-PSP
43	 39.80	+1	50381..50674	+	97	163938056	-	BcerKBAB4_0043	-	regulatory protein SpoVG
44	 38.48	0	51001..52380	+	459	163938057	-	BcerKBAB4_0044	-	UDP-N-acetylglucosamine pyrophosphorylase
45	 37.11	0	52399..53352	+	317	163938058	-	BcerKBAB4_0045	-	ribose-phosphate pyrophosphokinase
46	 35.58	0	53362..53985	+	207	163938059	-	BcerKBAB4_0046	-	peptidyl-tRNA hydrolase
47	 32.44	0	54056..54280	+	74	163938060	-	BcerKBAB4_0047	-	hypothetical protein
48	 35.57	0	54386..57916	+	1176	163938061	-	BcerKBAB4_0048	-	transcription-repair coupling factor
49	 36.13	0	58052..58588	+	178	163938062	-	BcerKBAB4_0049	-	AbrB family transcriptional regulator
50	 34.27	0	58820..60421	+	533	163938063	-	BcerKBAB4_0050	-	polysaccharide biosynthesis protein
51	 36.76	0	60434..61894	+	486	163938064	-	BcerKBAB4_0051	-	MazG family protein
52	 34.78	0	61909..62184	+	91	163938065	-	BcerKBAB4_0052	-	RNA-binding S4 domain-containing protein
53	 34.95	0	62243..62551	+	102	163938066	-	BcerKBAB4_0053	-	YabP family protein
54	 33.18	0	62548..63201	+	217	163938067	-	BcerKBAB4_0054	-	spore cortex biosynthesis protein YabQ
55	 33.61	0	63198..63557	+	119	163938068	-	BcerKBAB4_0055	-	septum formation initiator
56	 41.36	+1	63645..64130	+	161	163938069	-	BcerKBAB4_0056	-	hypothetical protein
57	 37.34	0	64710..67181	+	823	163938070	-	BcerKBAB4_0057	-	stage II sporulation protein E, protein serine/threonine phosphatase
58	 35.36	0	67385..68815	+	476	163938071	-	BcerKBAB4_0058	-	tRNA(Ile)-lysidine synthetase
59	 33.89	0	68812..69354	+	180	163938072	-	BcerKBAB4_0059	-	hypoxanthine phosphoribosyltransferase
60	 40.48	+1	69440..71341	+	633	163938073	-	BcerKBAB4_0060	-	ATP-dependent metalloprotease FtsH
61	 37.90	0	71540..72328	+	262	163938074	-	BcerKBAB4_0061	-	pantothenate kinase
62	 40.41	+1	72335..73210	+	291	163938075	-	BcerKBAB4_0062	-	Hsp33-like chaperonin
63	 41.13	+1	73328..74251	+	307	163938076	-	BcerKBAB4_0063	-	cysteine synthase A
64	 38.05	0	74475..75872	+	465	163938077	-	BcerKBAB4_0064	-	anthranilate synthase
65	 38.27	0	75878..76465	+	195	163938078	-	BcerKBAB4_0065	-	para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
66	 36.31	0	76459..77331	+	290	163938079	-	BcerKBAB4_0066	-	4-amino-4-deoxychorismate lyase
67	 40.42	+1	77306..78166	+	286	163938080	-	BcerKBAB4_0067	-	dihydropteroate synthase
68	 37.19	0	78167..78529	+	120	163938081	-	BcerKBAB4_0068	-	dihydroneopterin aldolase
69	 35.66	0	78526..79041	+	171	163938082	-	BcerKBAB4_0069	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
70	 40.20	+1	78993..79196	+	67	163938083	-	BcerKBAB4_0070	-	XRE family transcriptional regulator
71	 39.34	+1	79220..80218	+	332	163938084	-	BcerKBAB4_0071	-	nifR3 family TIM-barrel protein
72	 37.93	0	80379..81878	+	499	163938085	-	BcerKBAB4_0072	-	lysyl-tRNA synthetase
73	 33.77	0	92991..93452	+	153	163938086	-	BcerKBAB4_0073	-	transcriptional repressor, CtsR
74	 36.61	0	93622..94170	+	182	163938087	-	BcerKBAB4_0074	-	UvrB/UvrC protein
75	 35.77	0	94175..95239	+	354	163938088	-	BcerKBAB4_0075	-	ATP:guanido phosphotransferase
76	 37.40	0	95262..97697	+	811	163938089	-	BcerKBAB4_0076	-	ATPase
77	 40.31	+1	97792..99168	+	458	163938090	-	BcerKBAB4_0077	-	DNA repair protein RadA
78	 37.43	0	99172..100245	+	357	163938091	-	BcerKBAB4_0078	-	DNA integrity scanning protein DisA
79	 35.60	0	100406..101509	+	367	163938092	-	BcerKBAB4_0079	-	PilT domain-containing protein
80	 40.97	+1	101526..102206	+	226	163938093	-	BcerKBAB4_0080	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
81	 37.74	0	102320..102796	+	158	163938094	-	BcerKBAB4_0081	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
82	 37.86	0	102886..104343	+	485	163938095	-	BcerKBAB4_0082	-	glutamyl-tRNA synthetase
83	 36.94	0	104774..105439	+	221	163938096	-	BcerKBAB4_0083	-	serine O-acetyltransferase
84	 36.27	0	105420..106817	+	465	163938097	-	BcerKBAB4_0084	-	cysteinyl-tRNA synthetase
85	 40.20	+1	106820..107227	+	135	163938098	-	BcerKBAB4_0085	-	ribonuclease III
86	 38.04	0	107224..107967	+	247	163938099	-	BcerKBAB4_0086	-	RNA methyltransferase
87	 37.43	0	107971..108483	+	170	163938100	-	BcerKBAB4_0087	-	hypothetical protein
88	 35.61	0	108551..109210	+	219	163938101	-	BcerKBAB4_0088	-	RNA polymerase factor sigma-70
89	 33.33	0	109339..109485	+	48	163938102	-	BcerKBAB4_0089	-	50S ribosomal protein L33
90	 38.33	0	109518..109697	+	59	163938103	-	BcerKBAB4_0090	-	preprotein translocase subunit SecE
91	 37.08	0	109829..110362	+	177	163938104	-	BcerKBAB4_0091	-	transcription antitermination protein NusG
92	 43.66	+2	110531..110956	+	141	163938105	-	BcerKBAB4_0092	-	50S ribosomal protein L11
93	 41.13	+1	111137..111829	+	230	163938106	-	BcerKBAB4_0093	-	50S ribosomal protein L1
94	 40.32	+1	112064..112564	+	166	163938107	-	BcerKBAB4_0094	-	50S ribosomal protein L10
95	 40.28	+1	112632..112991	+	119	163938108	-	BcerKBAB4_0095	-	50S ribosomal protein L7/L12
96	 36.67	0	113068..113667	+	199	163938109	-	BcerKBAB4_0096	-	methyltransferase small
97	 41.99	+1	113959..117492	+	1177	163938110	-	BcerKBAB4_0097	-	DNA-directed RNA polymerase subunit beta
98	 40.64	+1	117530..121141	+	1203	163938111	-	BcerKBAB4_0098	-	DNA-directed RNA polymerase subunit beta'
99	 37.35	0	121255..121503	+	82	163938112	-	BcerKBAB4_0099	-	hypothetical protein
100	 39.95	+1	121618..122040	+	140	163938113	-	BcerKBAB4_0100	-	30S ribosomal protein S12
35.66	MEAN

3.54	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.