IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.95	0	185..829	-	214	15601866	sodA	PM0001	-	hypothetical protein
2	 43.39	0	983..3259	-	758	15601867	mdh_1	PM0002	-	malic enzyme
3	 41.34	0	3461..4159	+	232	15601868	rsuA_1	PM0003	-	hypothetical protein
4	 41.77	0	4170..5366	+	398	15601869	bcr_1	PM0004	-	bicyclomycin/multidrug efflux system
5	 42.68	0	5567..6208	+	213	15601870	ccmA	PM0005	-	cytochrome c biogenesis protein CcmA
6	 42.79	0	6236..6901	+	221	15601871	ccmB	PM0006	-	CcmB
7	 43.86	0	6914..7654	+	246	15601872	ccmC	PM0007	-	CcmC
8	 40.69	0	7672..7875	+	67	15601873	ccmD	PM0008	-	CcmD
9	 40.93	0	7872..8411	+	179	15601874	ccmE	PM0009	-	cytochrome c-type biogenesis protein CcmE
10	 44.12	+1	8408..10363	+	651	15601875	ccmF	PM0010	-	CcmF
11	 37.18	-1	10360..10905	+	181	15601876	dsbE_1	PM0011	-	DsbE
12	 41.29	0	10905..11369	+	154	15601877	ccmH_1	PM0012	-	CcmH
13	 39.34	0	11366..12280	+	304	15601878	ccmH_2	PM0013	-	CcmH
14	 36.30	-1	12413..12817	+	134	15601879	-	PM0014	-	hypothetical protein
15	 36.06	-1	12829..13452	+	207	15601880	-	PM0015	-	hypothetical protein
16	 36.30	-1	13476..13778	+	100	15601881	-	PM0016	-	hypothetical protein
17	 35.69	-1	13833..14597	-	254	15601882	-	PM0017	-	DNA replication initiation factor
18	 43.30	0	14619..15872	-	417	15601883	uraA	PM0018	-	hypothetical protein
19	 42.42	0	15992..16618	-	208	15601884	upp	PM0019	-	uracil phosphoribosyltransferase
20	 42.83	0	16766..17407	-	213	15601885	purN	PM0020	-	phosphoribosylglycinamide formyltransferase
21	 42.10	0	17407..18444	-	345	15601886	purM	PM0021	-	phosphoribosylaminoimidazole synthetase
22	 40.04	0	18687..19163	+	158	15601887	-	PM0022	-	hypothetical protein
23	 44.03	0	19571..21103	+	510	15601888	nrfA	PM0023	-	cytochrome c nitrite reductase
24	 42.10	0	21141..21836	+	231	15601889	nrfB	PM0024	-	cytochrome c-type protein NrfB
25	 45.23	+1	21833..22513	+	226	15601890	nrfC	PM0025	-	NrfC
26	 41.56	0	22510..23469	+	319	15601891	nrfD	PM0026	-	hypothetical protein
27	 42.58	0	23544..25469	+	641	15601892	nrfE	PM0027	-	NrfE
28	 42.50	0	25486..26052	+	188	15601893	dsbE_2	PM0028	-	DsbE
29	 44.24	+1	26036..26521	+	161	15601894	nrfF_1	PM0029	-	NrfF
30	 41.94	0	26518..27354	+	278	15601895	nrfF_2	PM0030	-	NrfF
31	 43.30	0	27427..28650	+	407	15601896	-	PM0031	-	hypothetical protein
32	 43.71	0	29585..31039	+	484	15601897	hktE	PM0032	-	HktE
33	 37.80	0	31088..31624	-	178	15601898	-	PM0033	-	hypothetical protein
34	 43.02	0	31764..35243	+	1159	15601899	dnaE	PM0034	-	DNA polymerase III subunit alpha
35	 39.86	0	35240..35806	+	188	15601900	-	PM0035	-	hypothetical protein
36	 43.13	0	35843..37210	-	455	15601901	sdaA	PM0036	-	hypothetical protein
37	 39.13	0	37268..38509	-	413	15601902	sdaC	PM0037	-	SdaC
38	 41.30	0	38776..39603	-	275	15601903	-	PM0038	-	hypothetical protein
39	 42.17	0	39720..40703	-	327	15601904	ars	PM0039	-	Ars
40	 42.58	0	40842..43025	-	727	15601905	pfhR	PM0040	-	PfhR
41	 36.34	-1	43166..44860	-	564	15601906	-	PM0041	-	hypothetical protein
42	 41.08	0	45038..45592	+	184	15601907	-	PM0042	-	hypothetical protein
43	 44.81	+1	45666..47015	-	449	15601908	gdhA	PM0043	-	glutamate dehydrogenase
44	 37.48	0	47349..47975	-	208	15601909	-	PM0044	-	hypothetical protein
45	 40.87	0	48229..49647	+	472	15601910	-	PM0045	-	hypothetical protein
46	 42.83	0	49859..50395	-	178	15601911	dsbB	PM0046	-	disulfide bond formation protein B
47	 40.40	0	50417..51958	-	513	15601912	nhaB	PM0047	-	sodium/proton antiporter
48	 39.94	0	52112..52837	+	241	15601913	fadR	PM0048	-	fatty acid metabolism regulator
49	 39.98	0	52929..53966	-	345	15601914	fbpC	PM0049	-	FbpC
50	 40.87	0	53969..55627	-	552	15601915	fbpB	PM0050	-	FbpB
51	 40.36	0	55706..56773	-	355	15601916	fbpA	PM0051	-	FbpA
52	 42.39	0	56904..58118	-	404	15601917	-	PM0052	-	aminotransferase AlaT
53	 42.59	0	58288..59583	+	431	15601918	menF	PM0053	-	menaquinone-specific isochorismate synthase
54	 42.41	0	59596..61302	+	568	15601919	menD	PM0054	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
55	 40.19	0	61344..62087	+	247	15601920	-	PM0055	-	acyl-CoA thioester hydrolase YfbB
56	 39.39	0	62686..64137	+	483	15601921	lspB_1	PM0056	-	LspB
57	 40.81	0	64167..72014	+	2615	15601922	pfhB1	PM0057	-	PfhB1
58	 36.25	-1	73336..74742	+	468	15601923	lspB_2	PM0058	-	LspB
59	 39.94	0	74772..86531	+	3919	15601924	pfhB2	PM0059	-	PfhB2
60	 40.93	0	86700..87620	-	306	15601925	era	PM0060	-	GTP-binding protein Era
61	 44.10	+1	87617..88294	-	225	15601926	rnc	PM0061	-	ribonuclease III
62	 40.96	0	88301..89323	-	340	15601927	lepB	PM0062	-	hypothetical protein
63	 42.90	0	89342..91138	-	598	15601928	lepA	PM0063	-	GTP-binding protein LepA
64	 38.02	0	91370..91753	-	127	15601929	-	PM0064	-	autonomous glycyl radical cofactor GrcA
65	 42.30	0	92029..92697	+	222	15601930	ung	PM0065	-	uracil-DNA glycosylase
66	 40.15	0	92725..93501	+	258	15601931	-	PM0066	-	hypothetical protein
67	 38.14	0	93488..94069	+	193	15601932	-	PM0067	-	hypothetical protein
68	 40.33	0	94070..94984	+	304	15601933	-	PM0068	-	hypothetical protein
69	 42.65	0	95079..96044	+	321	15601934	pfkA	PM0069	-	6-phosphofructokinase
70	 42.27	0	96137..97300	-	387	161723317	rumB	PM0070	-	23S rRNA methyluridine methyltransferase
71	 44.03	0	97334..98389	-	351	15601936	-	PM0071	-	beta-hexosaminidase
72	 41.31	0	98398..98748	-	116	15601937	-	PM0072	-	hypothetical protein
73	 41.60	0	98748..99098	-	116	15601938	-	PM0073	-	hypothetical protein
74	 42.96	0	99486..100337	+	283	15601939	-	PM0074	-	hypothetical protein
75	 41.83	0	100417..102747	+	776	15601940	pflB	PM0075	-	PflB
76	 42.25	0	102920..104959	+	679	15601941	est	PM0076	-	Est
77	 39.54	0	105123..105863	+	246	15601942	pflA	PM0077	-	pyruvate formate lyase-activating enzyme 1
78	 45.11	+1	106080..106580	-	166	15601943	-	PM0078	-	hypothetical protein
79	 44.84	+1	106595..107446	-	283	15601944	thyA	PM0079	-	thymidylate synthase
80	 42.68	0	107443..108255	-	270	15601945	lgt	PM0080	-	prolipoprotein diacylglyceryl transferase
81	 42.26	0	108265..109059	-	264	15601946	-	PM0081	-	hypothetical protein
82	 37.86	0	109062..109658	-	198	15601947	-	PM0082	-	dinucleoside polyphosphate hydrolase
83	 39.15	0	110243..110809	-	188	15601948	ampD	PM0083	-	N-acetyl-anhydromuranmyl-L-alanine amidase
84	 38.85	0	110969..111403	+	144	15601949	-	PM0084	-	hypothetical protein
85	 40.91	0	111403..112788	+	461	15601950	hofB	PM0085	-	HofB
86	 38.23	0	112857..113999	+	380	15601951	hofC	PM0086	-	HofC
87	 39.56	0	113999..114721	+	240	15601952	hopD	PM0087	-	HopD
88	 40.42	0	114736..115356	+	206	15601953	coaE	PM0088	-	dephospho-CoA kinase
89	 44.14	+1	115349..115570	+	73	15601954	-	PM0089	-	zinc-binding protein
90	 35.56	-1	115570..115839	+	89	15601955	-	PM0090	-	hypothetical protein
91	 42.50	0	116288..117661	+	457	15601956	-	PM0091	-	hypothetical protein
92	 38.05	0	117906..118223	+	105	15601957	-	PM0092	-	hypothetical protein
93	 40.27	0	118281..119174	-	297	15601958	xerD	PM0093	-	site-specific tyrosine recombinase XerD
94	 41.80	0	119177..120334	-	385	15601959	-	PM0094	-	putative 3-phenylpropionic acid transporter
95	 43.96	0	120334..121161	-	275	15601960	proC	PM0095	-	pyrroline-5-carboxylate reductase
96	 38.28	0	121255..122163	+	302	15601961	rdgC	PM0096	-	recombination associated protein
97	 42.74	0	122316..123059	+	247	15601962	-	PM0097	-	hypothetical protein
98	 42.59	0	123125..124291	-	388	15601963	oapA	PM0098	-	OapA
99	 40.04	0	124385..125398	-	337	15601964	-	PM0099	-	hypothetical protein
100	 40.92	0	125434..126000	+	188	15601965	efp	PM0100	-	elongation factor P
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.