IslandPath Analysis: Burkholderia cenocepacia J2315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.83   STD DEV: 4.26
Burkholderia cenocepacia J2315 chromosome 3, complete genome - 1..875977
752 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.97	-1	1..1317	+	438	191639870	-	BCAS0001	-	hypothetical protein
2	 63.57	0	1413..2444	-	343	197294854	-	BCAS0002	-	putative chromosome partitioning protein
3	 57.04	-2	2437..3132	-	231	197294855	-	BCAS0003	-	ParA protein
4	 60.25	-1	4783..5748	-	321	197294856	-	BCAS0004	-	putative transposase
5	 62.93	0	6086..7102	-	338	197294857	-	BCAS0005	-	AraC family regulatory protein
6	 66.22	0	7234..8358	-	374	197294858	-	BCAS0006	-	hypothetical protein
7	 66.97	0	8442..9095	+	217	197294859	-	BCAS0007	-	TetR family regulatory protein
8	 66.06	0	9291..9782	+	163	197294860	-	BCAS0008	-	putative NADPH-dependent FMN reductase
9	 64.10	0	9888..10472	-	194	197294861	-	BCAS0009	-	hypothetical protein
10	 70.68	0	11113..11784	+	223	197294862	-	BCAS0010	-	putative activator of osmoprotectant transporter
11	 68.08	0	12269..13330	+	353	197294863	-	BCAS0011	-	hypothetical protein
12	 68.19	0	13637..14227	-	196	197294864	-	BCAS0012	-	putative NifQ protein
13	 68.08	0	14303..14728	-	141	197294865	-	BCAS0013	-	putative molybdenum transport protein
14	 72.92	+1	14897..16384	-	495	197294866	-	BCAS0014	-	outer membrane efflux protein
15	 70.25	0	16381..17358	-	325	197294867	-	BCAS0015	-	efflux system transport protein
16	 60.56	-1	17360..17572	-	70	197294868	-	BCAS0016	-	hypothetical protein
17	 71.00	0	17607..19730	-	707	197294869	-	BCAS0017	-	putative fusaric acid resistance transporter protein
18	 72.92	+1	19727..20206	-	159	197294870	-	BCAS0018	-	MarR family regulatory protein
19	 71.31	+1	20532..21392	+	286	197294871	-	BCAS0019	-	hypothetical protein
20	 66.07	0	21431..22594	+	387	197294872	-	BCAS0020	-	putative acyl-CoA dehydrogenase
21	 69.64	0	22607..23785	+	392	197294873	-	BCAS0021	-	putative CoA-transferase
22	 72.46	+1	23805..25202	+	465	197294874	-	BCAS0022	-	putative MmgE/Prp family protein
23	 72.26	+1	25199..26002	+	267	197294875	-	BCAS0023	-	HpcH/HpaI aldolase/citrate lyase family protein
24	 68.79	0	26181..27593	+	470	197294876	-	BCAS0024	-	GntR family regulatory protein
25	 72.68	+1	27692..28672	+	326	197294877	-	BCAS0025	-	putative threonine dehydratase
26	 72.14	+1	28674..29678	+	334	197294878	-	BCAS0026	-	putative ornithine cyclodeaminase
27	 67.82	0	29689..30897	+	402	197294879	-	BCAS0027	-	putative metallopeptidase
28	 69.69	0	30902..31927	+	341	197294880	-	BCAS0028	-	succinylglutamate desuccinylase/aspartoacylase family protein
29	 66.45	0	31941..32411	+	156	197294881	-	BCAS0029	-	putative transcriptional regulator, LRP family
30	 69.71	0	32533..34011	+	492	197294882	-	BCAS0030	-	putative succinate-semialdehyde dehydrogenase (NADP+)
31	 67.10	0	34032..35426	+	464	197294883	-	BCAS0031	-	putative aminotransferase
32	 58.86	-1	35528..36052	+	174	197294884	-	BCAS0032	-	putative transposase
33	 56.75	-2	36052..36888	+	278	197294885	-	BCAS0033	-	putative transposase
34	 64.74	0	37017..37949	-	310	197294886	-	BCAS0034	-	metallo-beta-lactamase superfamily protein
35	 67.68	0	38251..39636	-	461	197294887	-	BCAS0035	-	putative proline/betaine transporter
36	 71.46	+1	39786..40682	-	298	197294888	-	BCAS0036	-	LysR family regulatory protein
37	 70.60	0	40831..42102	+	423	197294889	-	BCAS0037	-	Major Facilitator Superfamily protein
38	 70.37	0	42175..43065	+	296	197294890	-	BCAS0038	-	putative aminohydrolase
39	 69.82	0	43074..43961	+	295	197294891	-	BCAS0039	-	putative carboxyvinyl-carboxyphosphonate phosphorylmutase
40	 69.53	0	44026..45354	+	442	197294892	-	BCAS0040	-	alpha-ketoglutarate permease
41	 68.52	0	45529..46929	+	466	197294893	-	BCAS0041	-	radical SAM superfamily protein
42	 75.31	+1	46926..48071	+	381	197294894	-	BCAS0042	-	putative FAD-dependent oxidoreductase
43	 69.69	0	48068..49423	+	451	197294895	-	BCAS0043	-	putative L-lysine 6-monooxygenase
44	 69.35	0	49439..50704	+	421	197294896	-	BCAS0044	-	putative phosphoribosylglycinamide synthetase protein
45	 70.99	0	50718..52313	+	531	197294897	-	BCAS0045	-	putative methionyl-tRNA synthetase
46	 70.56	0	52310..53491	+	393	197294898	-	BCAS0046	-	putative CoA-transferase
47	 68.38	0	53478..53828	+	116	197294899	-	BCAS0047	-	hypothetical protein
48	 75.22	+1	53818..54975	+	385	197294900	-	BCAS0048	-	putative prephenate dehydrogenase
49	 68.40	0	54927..55850	+	307	197294901	-	BCAS0049	-	putative auxin efflux carrier family protein
50	 70.07	0	55921..56832	+	303	197294902	-	BCAS0050	-	putative amidohydrolase
51	 73.96	+1	57024..58724	-	566	197294903	-	BCAS0051	-	putative glycerol utilisation-related protein
52	 70.04	0	58983..60020	-	345	197294904	sfnR	BCAS0052	-	sigma-54 dependent transcriptional regulator
53	 70.41	0	60588..61148	+	186	197294905	msuE	BCAS0053	-	FMN reductase
54	 65.31	0	61186..62289	+	367	197294906	-	BCAS0054	-	putative luciferase-like monooxygenase
55	 67.44	0	62359..63006	-	215	197294907	-	BCAS0055	-	putative transporter-LysE family
56	 68.79	0	63118..63966	+	282	197294908	-	BCAS0056	-	LysR family regulatory protein
57	 68.80	0	63987..64877	-	296	197294909	-	BCAS0057	-	LysR family regulatory protein
58	 68.31	0	65031..68078	+	1015	197294910	-	BCAS0058	-	putative oxidoreductase
59	 62.71	0	68165..68467	-	100	197294911	-	BCAS0059	-	putative DNA-binding protein
60	 66.40	0	68555..69688	-	377	197294912	-	BCAS0060	-	extracellular amino acid-binding protein
61	 71.44	+1	70362..71261	-	299	197294913	-	BCAS0061	-	hypothetical protein
62	 68.92	0	71409..72296	+	295	197294914	-	BCAS0062	-	LysR family regulatory protein
63	 64.26	0	72518..73183	+	221	197294915	-	BCAS0063	-	hypothetical protein
64	 66.67	0	73241..73708	+	155	197294916	-	BCAS0064	-	hypothetical protein
65	 68.06	0	73826..74470	-	214	197294917	-	BCAS0065	-	putative glutathione S-transferase
66	 67.35	0	74573..75745	-	390	197294918	-	BCAS0066	-	putative porin
67	 64.05	0	76231..77184	+	317	197294919	-	BCAS0067	-	AraC family regulatory protein
68	 60.25	-1	77201..78166	-	321	197294920	-	BCAS0068	-	putative transposase
69	 63.52	0	78847..79482	+	211	197294921	-	BCAS0069	-	two-component regulatory system, response regulator protein
70	 67.11	0	79501..80850	-	449	197294922	-	BCAS0070	-	two-component regulatory system, response regulator protein
71	 70.89	0	81108..81533	+	141	197294923	-	BCAS0071	-	hypothetical protein
72	 65.85	0	81672..82040	+	122	197294924	-	BCAS0072	-	two-component regulatory system, response regulator protein
73	 67.60	0	82146..83000	+	284	197294925	-	BCAS0073	-	putative hydrolase
74	 64.44	0	83072..83791	+	239	197294926	-	BCAS0074	-	hypothetical protein
75	 69.72	0	83802..84848	+	348	197294927	-	BCAS0075	-	putative alcohol dehydrogenase
76	 66.81	0	84845..85564	+	239	197294928	-	BCAS0076	-	hypothetical protein
77	 67.72	0	85610..86464	+	284	197294929	-	BCAS0077	-	putative hydrolase
78	 68.15	0	86496..87503	+	335	197294930	-	BCAS0078	-	putative dehydrogenase, zinc-containing
79	 64.96	0	87536..88357	+	273	197294931	cpoF	BCAS0079	-	non-heme chloroperoxidase
80	 67.40	0	88417..89781	+	454	197294932	-	BCAS0080	-	putative pyridine nucleotide-disulphide oxidoreductase family protein
81	 67.96	0	89870..91723	-	617	197294933	-	BCAS0081	-	ABC transporter ATP-binding membrane protein
82	 70.80	0	91817..92881	-	354	197294934	-	BCAS0082	-	serine peptidase, family S33
83	 66.00	0	92985..93581	+	198	197294935	-	BCAS0083	-	TetR family regulatory protein
84	 65.08	0	93708..94274	+	188	197294936	-	BCAS0084	-	TetR family regulatory protein
85	 68.08	0	94498..94923	+	141	197294937	ohR	BCAS0085	-	organic hydroperoxide resistance protein
86	 67.73	0	94981..96015	+	344	197294938	-	BCAS0086	-	putative exported lipase
87	 70.97	0	96271..96642	+	123	197294939	-	BCAS0087	-	LrgA family membrane protein
88	 68.98	0	96639..97373	+	244	197294940	-	BCAS0088	-	LrgB family membrane protein
89	 70.26	0	97603..97908	+	101	197294941	-	BCAS0089	-	hypothetical protein
90	 66.67	0	98014..98616	-	200	197294942	wrbA	BCAS0090	-	flavoprotein
91	 64.88	0	98678..99403	-	241	197294943	-	BCAS0091	-	putative pirin family protein
92	 69.58	0	99521..100447	+	308	197294944	-	BCAS0092	-	LysR family regulatory protein
93	 68.71	0	100538..101662	+	374	197294945	-	BCAS0093	-	putative Fic family protein
94	 64.14	0	101895..102092	+	65	197294946	-	BCAS0094	-	hypothetical protein
95	 65.88	0	102175..103569	+	464	197294947	-	BCAS0095	-	putative sodium:solute symporter family protein
96	 69.30	0	103591..105258	+	555	197294948	-	BCAS0096	-	amidohydrolase family protein
97	 69.96	0	105282..106283	+	333	197294949	-	BCAS0097	-	putative cobalamin synthesis protein
98	 66.76	0	106439..107485	+	348	197294950	-	BCAS0098	-	hypothetical protein
99	 70.97	0	107501..108592	-	363	197294951	-	BCAS0099	-	LacI family regulatory protein
100	 72.78	+1	108827..109759	+	310	197294952	-	BCAS0100	-	putative ribokinase
66.83	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.