IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.47   STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.06	0	50..1432	+	460	158520018	-	Dole_0001	-	chromosomal replication initiator protein DnaA
2	 62.71	+1	1624..3012	+	462	158520019	-	Dole_0002	-	FAD linked oxidase domain-containing protein
3	 55.09	0	3019..3234	-	71	158520020	-	Dole_0003	-	hypothetical protein
4	 61.17	0	3231..4013	-	260	158520021	-	Dole_0004	-	inositol-phosphate phosphatase
5	 65.43	+1	4067..5764	-	565	158520022	-	Dole_0005	-	GTP-binding protein HSR1-related
6	 61.37	0	5815..7230	-	471	158520023	-	Dole_0006	-	replicative DNA helicase
7	 61.18	0	7279..7734	-	151	158520024	-	Dole_0007	-	ribosomal protein L9
8	 63.31	+1	7957..8940	-	327	158520025	-	Dole_0008	-	hypothetical protein
9	 53.97	0	8962..9213	-	83	158520026	-	Dole_0009	-	ribosomal protein S18
10	 62.72	+1	9267..9773	-	168	158520027	-	Dole_0010	-	ribosomal protein S6
11	 55.20	0	10367..11674	-	435	158520028	-	Dole_0011	-	hypothetical protein
12	 63.72	+1	11993..13690	-	565	158520029	-	Dole_0012	-	integrin-like repeat-containing protein
13	 60.73	0	13760..15190	-	476	158520030	-	Dole_0013	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
14	 59.87	0	15398..16750	+	450	158520031	-	Dole_0014	-	putative ribonuclease BN
15	 59.20	0	17136..17657	-	173	158520032	-	Dole_0015	-	carboxymuconolactone decarboxylase
16	 57.07	0	17995..18588	-	197	158520033	-	Dole_0016	-	hypothetical protein
17	 66.16	+1	18772..19362	-	196	158520034	-	Dole_0017	-	hypothetical protein
18	 60.75	0	19366..20346	-	326	158520035	-	Dole_0018	-	hypothetical protein
19	 62.05	0	20373..20849	-	158	158520036	-	Dole_0019	-	hypothetical protein
20	 61.21	0	20846..22312	-	488	158520037	-	Dole_0020	-	hypothetical protein
21	 58.75	0	22361..23017	-	218	158520038	-	Dole_0021	-	hydrolase
22	 56.55	0	23014..23517	-	167	158520039	-	Dole_0022	-	hypothetical protein
23	 60.44	0	23527..23751	-	74	158520040	-	Dole_0023	-	hypothetical protein
24	 56.30	0	23770..24261	-	163	158520041	-	Dole_0024	-	phosphodiesterase
25	 64.36	+1	25106..27145	-	679	158520042	-	Dole_0025	-	primosomal protein N'
26	 57.14	0	27261..28541	-	426	158520043	-	Dole_0026	-	citrate synthase I
27	 56.03	0	28802..29572	+	256	158520044	-	Dole_0027	-	hypothetical protein
28	 61.99	0	29588..30250	+	220	158520045	-	Dole_0028	-	beta-lactamase domain-containing protein
29	 61.09	0	30274..30918	-	214	158520046	-	Dole_0029	-	two component LuxR family transcriptional regulator
30	 61.90	0	30896..36115	-	1739	158520047	-	Dole_0030	-	ATPase domain-containing protein
31	 55.66	0	36230..37147	-	305	158520048	-	Dole_0031	-	hypothetical protein
32	 58.05	0	37152..37847	-	231	158520049	-	Dole_0032	-	hypothetical protein
33	 55.73	0	37857..38633	-	258	158520050	-	Dole_0033	-	hypothetical protein
34	 58.98	0	38838..41114	+	758	158520051	-	Dole_0034	-	TPR repeat-containing adenylate/guanylate cyclase
35	 62.67	+1	41182..42708	+	508	158520052	-	Dole_0035	-	SpoIID/LytB domain-containing protein
36	 60.75	0	42966..43844	+	292	158520053	-	Dole_0036	-	hypothetical protein
37	 58.85	0	43905..45068	+	387	158520054	-	Dole_0037	-	TPR repeat-containing protein
38	 65.41	+1	45095..45967	+	290	158520055	-	Dole_0038	-	putative periplasmic protein
39	 59.08	0	46138..46875	+	245	158520056	-	Dole_0039	-	nitroreductase
40	 59.71	0	46877..49003	+	708	158520057	-	Dole_0040	-	AMP-dependent synthetase and ligase
41	 60.89	0	49047..50552	+	501	158520058	-	Dole_0041	-	acyl-CoA dehydrogenase domain-containing protein
42	 59.25	0	50587..51408	-	273	158520059	-	Dole_0042	-	pantoate--beta-alanine ligase
43	 55.04	0	51701..54091	+	796	158520060	-	Dole_0043	-	LVIVD repeat-containing protein
44	 61.84	0	54260..54673	+	137	158520061	-	Dole_0044	-	single-strand binding protein
45	 51.08	0	54839..55024	-	61	158520062	-	Dole_0045	-	twin arginine-targeting protein translocase
46	 61.53	0	55182..56252	+	356	158520063	-	Dole_0046	-	hypothetical protein
47	 56.86	0	56392..57237	+	281	158520064	-	Dole_0047	-	ATPase central domain-containing protein
48	 59.24	0	57271..58482	+	403	158520065	-	Dole_0048	-	hypothetical protein
49	 51.84	0	58501..59181	+	226	158520066	-	Dole_0049	-	response regulator receiver protein
50	 45.87	-1	59332..59658	+	108	158520067	-	Dole_0050	-	addiction module killer protein
51	 44.80	-1	59661..59939	+	92	158520068	-	Dole_0051	-	putative transcriptional regulator
52	 55.44	0	60037..60615	+	192	158520069	-	Dole_0052	-	hypothetical protein
53	 44.71	-1	60688..60942	+	84	158520070	-	Dole_0053	-	hypothetical protein
54	 61.15	0	60975..62369	-	464	158520071	-	Dole_0054	-	DEAD/DEAH box helicase domain-containing protein
55	 63.90	+1	62536..63330	+	264	158520072	-	Dole_0055	-	hypothetical protein
56	 51.44	0	63436..63921	+	161	158520073	-	Dole_0056	-	hypothetical protein
57	 64.02	+1	64046..65218	-	390	158520074	-	Dole_0057	-	alanine racemase
58	 61.16	0	65215..65940	-	241	158520075	-	Dole_0058	-	pseudouridine synthase
59	 64.13	+1	65937..67118	-	393	158520076	-	Dole_0059	-	arginine biosynthesis bifunctional protein ArgJ
60	 62.69	+1	67250..67978	-	242	158520077	-	Dole_0060	-	vitamin B12 dependent methionine synthase activation region
61	 60.40	0	67985..68638	-	217	158520078	-	Dole_0061	-	cobalamin B12-binding domain-containing protein
62	 59.86	0	68641..69801	-	386	158520079	-	Dole_0062	-	uroporphyrinogen decarboxylase
63	 61.06	0	69963..71192	+	409	158520080	-	Dole_0063	-	molybdenum cofactor synthesis domain-containing protein
64	 48.72	-1	72123..72590	+	155	158520081	-	Dole_0064	-	hypothetical protein
65	 44.97	-1	72623..73765	-	380	158520082	-	Dole_0065	-	hypothetical protein
66	 47.66	-1	73762..74082	-	106	158520083	-	Dole_0066	-	hypothetical protein
67	 52.16	0	75364..75825	-	153	158520084	-	Dole_0067	-	cyclic nucleotide-binding protein
68	 63.13	+1	75864..77306	-	480	158520085	-	Dole_0068	-	tRNA(Ile)-lysidine synthetase
69	 55.66	0	77706..78359	+	217	158520086	-	Dole_0069	-	GrpE protein
70	 58.63	0	78419..80347	+	642	158520087	-	Dole_0070	-	chaperone protein DnaK
71	 59.79	0	80417..80896	+	159	158520088	-	Dole_0071	-	NADPH-dependent FMN reductase
72	 53.64	0	80934..81455	-	173	158520089	-	Dole_0072	-	hypothetical protein
73	 64.71	+1	81514..82383	-	289	158520090	-	Dole_0073	-	succinyl-CoA synthetase, alpha subunit
74	 60.33	0	82431..83597	-	388	158520091	-	Dole_0074	-	succinyl-CoA synthetase, beta subunit
75	 60.26	0	83597..85642	-	681	158520092	-	Dole_0075	-	hypothetical protein
76	 58.87	0	85681..85911	-	76	158520093	-	Dole_0076	-	hypothetical protein
77	 59.52	0	85930..87483	-	517	158520094	-	Dole_0077	-	carboxyl transferase
78	 62.95	+1	87606..88601	-	331	158520095	-	Dole_0078	-	LAO/AO transport system ATPase
79	 61.81	0	88777..90897	-	706	158520096	-	Dole_0079	-	methylmalonyl-CoA mutase
80	 55.39	0	90941..91348	-	135	158520097	-	Dole_0080	-	glyoxalase/bleomycin resistance protein/dioxygenase
81	 60.10	0	91385..92572	-	395	158520098	-	Dole_0081	-	aspartate aminotransferase
82	 56.45	0	92860..93045	+	61	158520099	-	Dole_0082	-	hypothetical protein
83	 63.71	+1	93215..94264	+	349	158520100	-	Dole_0083	-	queuosine biosynthesis protein
84	 63.46	+1	94358..95512	+	384	158520101	-	Dole_0084	-	queuine tRNA-ribosyltransferase
85	 56.16	0	95607..95825	+	72	158520102	-	Dole_0085	-	NifU domain-containing protein
86	 53.33	0	95992..96306	+	104	158520103	-	Dole_0086	-	ribosomal protein L21
87	 60.32	0	96368..96619	+	83	158520104	-	Dole_0087	-	50S ribosomal protein L27
88	 61.18	0	96616..97617	+	333	158520105	-	Dole_0088	-	GTP-binding protein Obg/CgtA
89	 60.48	0	97607..98737	+	376	158520106	-	Dole_0089	-	glutamate 5-kinase
90	 61.97	0	98775..100031	+	418	158520107	-	Dole_0090	-	gamma-glutamyl phosphate reductase
91	 53.51	0	100059..100727	+	222	158520108	-	Dole_0091	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
92	 54.78	0	100724..101068	+	114	158520109	-	Dole_0092	-	iojap-like protein
93	 51.56	0	101094..102629	+	511	158520110	-	Dole_0093	-	phosphoglyceromutase
94	 37.83	-2	103072..104205	+	377	158520111	-	Dole_0094	-	DNA polymerase III, beta subunit
95	 47.57	-1	104210..106654	+	814	158520112	-	Dole_0095	-	DNA gyrase, B subunit
96	 56.20	0	106651..107988	-	445	158520113	-	Dole_0096	-	asparaginyl-tRNA synthetase
97	 60.35	0	108032..110485	+	817	158520114	-	Dole_0097	-	radical SAM domain-containing protein
98	 57.21	0	110589..112142	+	517	158520115	-	Dole_0098	-	ribonuclease
99	 51.11	0	112349..112483	+	44	158520116	-	Dole_0099	-	ribosomal protein L34
100	 47.54	-1	112621..112986	+	121	158520117	-	Dole_0100	-	ribonuclease P protein component
56.47	MEAN

5.93	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.