IslandPath Analysis: Burkholderia pseudomallei 1710b



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.98   STD DEV: 4.40
Burkholderia pseudomallei 1710b chromosome I, complete sequence - 1..4126292
3736 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.11	0	6370..7647	-	425	76811136	-	BURPS1710b_0006	-	lipase/acylhydrolase, putative
2	 65.77	0	8346..9344	+	332	76810093	paaG	BURPS1710b_0007	-	phenylacetate-CoA oxygenase subunit PaaA
3	 65.82	0	8747..9691	+	314	76809044	paaB	BURPS1710b_0008	-	phenylacetic acid degradation protein PaaB
4	 68.16	0	9702..10505	+	267	76811396	paaI	BURPS1710b_0009	-	phenylacetate-CoA oxygenase, PaaI subunit
5	 73.59	+1	10541..11161	+	206	76810812	paaD	BURPS1710b_0010	-	phenylacetic acid degradation protein PaaD
6	 67.68	0	11163..12251	+	362	76809324	paaK	BURPS1710b_0011	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
7	 70.64	0	12373..13203	+	276	76808748	-	BURPS1710b_0012	-	hypothetical protein
8	 65.00	0	13230..13829	+	199	76811058	paaR	BURPS1710b_0013	-	TetR family transcriptional regulator
9	 64.19	0	13951..14718	+	255	76810005	-	BURPS1710b_0014	-	acetyltransferase
10	 65.31	0	14837..15352	-	171	76809132	lrp	BURPS1710b_0015	-	transcriptional regulator
11	 63.21	-1	15504..16601	+	365	76811849	hppD	BURPS1710b_0016	-	4-hydroxyphenylpyruvate dioxygenase
12	 67.68	0	16837..17034	-	65	76809859	-	BURPS1710b_0017	-	putative outer membrane protein
13	 68.29	0	17354..20935	+	1193	76808786	-	BURPS1710b_0018	-	indolepyruvate ferredoxin oxidoreductase
14	 66.62	0	21504..23825	-	773	76808552	maeB-2	BURPS1710b_0019	-	malic enzyme
15	 64.19	0	24303..24989	+	228	162210031	pyrE	BURPS1710b_0020	-	orotate phosphoribosyltransferase
16	 71.86	0	25291..25887	+	198	76811198	-	BURPS1710b_0021	-	phosphatidylethanolamine-binding protein
17	 68.18	0	26055..26849	+	264	76809600	wrbA	BURPS1710b_0022	-	flavodoxin domain-containing protein
18	 68.36	0	27002..27946	+	314	76809969	argC	BURPS1710b_0023	-	N-acetyl-gamma-glutamyl-phosphate reductase
19	 69.29	0	28421..29794	+	457	76809135	-	BURPS1710b_0024	-	putative lipoprotein
20	 67.31	0	29921..31171	+	416	76810854	-	BURPS1710b_0025	-	putative lipoprotein
21	 65.94	0	31191..32021	+	276	76811687	ompW	BURPS1710b_0026	-	OmpW family outer membrane protein
22	 72.10	0	32208..33146	-	312	76809113	-	BURPS1710b_0027	-	transcriptional regulatory protein
23	 76.28	+1	33242..34510	+	422	76810021	-	BURPS1710b_0028	-	MFS permease
24	 68.46	0	34601..35269	-	222	76811302	-	BURPS1710b_0029	-	amino acid transporter LysE
25	 69.48	0	35368..37179	-	603	76810559	-	BURPS1710b_0030	-	dehydrogenase
26	 69.05	0	36364..37119	+	251	76811351	-	BURPS1710b_0031	-	hypothetical protein
27	 59.88	-1	37713..38390	-	225	76808984	-	BURPS1710b_0032	-	hypothetical protein
28	 61.57	-1	38158..38373	+	71	76809790	-	BURPS1710b_0033	-	hypothetical protein
29	 68.87	0	38545..38952	+	135	76811066	-	BURPS1710b_0034	-	hypothetical protein
30	 65.72	0	40161..40478	-	105	76809984	-	BURPS1710b_0035	-	hypothetical protein
31	 64.11	0	40993..42399	+	468	76811254	-	BURPS1710b_0036	-	amino acid permease
32	 71.18	0	42713..43399	-	228	76812061	-	BURPS1710b_0038	-	cytochrome c family protein
33	 69.29	0	43075..43875	-	266	76809830	-	BURPS1710b_0039	-	phospholipid-binding domain-containing protein
34	 69.26	0	43894..44472	-	192	76810400	gmhA	BURPS1710b_0040	-	phosphoheptose isomerase
35	 73.50	+1	44595..45077	-	160	76811551	hemU-1	BURPS1710b_0041	-	hypothetical protein
36	 70.83	0	45076..45963	+	295	76809308	-	BURPS1710b_0042	-	hypothetical protein
37	 65.88	0	46058..46693	-	211	76810357	-	BURPS1710b_0043	-	rare lipoprotein A family protein
38	 67.91	0	47294..47938	+	214	76810998	glob1	BURPS1710b_0044	-	metallo-beta-lactamase superfamily protein
39	 66.09	0	48132..49508	+	458	76811959	-	BURPS1710b_0045	-	hypothetical protein
40	 63.18	-1	48682..49140	+	152	76808805	lrp	BURPS1710b_0046	-	AsnC family transcriptional regulator
41	 66.08	0	49319..50509	-	396	76809238	-	BURPS1710b_0047	-	cation efflux family protein
42	 57.41	-2	50749..51126	-	125	76810880	bprA	BURPS1710b_0048	-	H-NS histone family protein
43	 71.16	0	51427..52293	-	288	76809682	-	BURPS1710b_0049	-	pyridoxamine 5'-phosphate oxidase family protein
44	 72.48	+1	52510..53628	+	372	76811966	-	BURPS1710b_0050	-	amino acid ABC transporter, permease protein, putative
45	 64.65	0	53819..54961	-	380	76811569	-	BURPS1710b_0051	-	outative extracellular ligand binding protein
46	 72.66	+1	55417..56517	-	366	76810776	fabK	BURPS1710b_0052	-	2-nitropropane dioxygenase family oxidoreductase
47	 69.26	0	56844..57536	+	230	76809351	-	BURPS1710b_0053	-	dienelactone hydrolase
48	 72.64	+1	57631..59121	+	496	76811561	nylA	BURPS1710b_0054	-	6-aminohexanoate-cyclic-dimer hydrolase
49	 67.15	0	59305..60135	-	276	76811025	metF	BURPS1710b_0055	-	5,10-methylenetetrahydrofolate reductase
50	 60.17	-1	60153..60506	-	117	76808931	-	BURPS1710b_0056	-	YvlD
51	 64.14	0	60670..62091	-	473	76808996	ahcY	BURPS1710b_0057	-	S-adenosyl-L-homocysteine hydrolase
52	 66.94	0	62445..63176	-	243	76811948	fliA	BURPS1710b_0058	-	flagellar biosynthesis sigma factor
53	 69.99	0	62511..64133	+	540	76808973	-	BURPS1710b_0059	-	hypothetical protein
54	 73.68	+1	63201..64013	-	270	76811149	flhG	BURPS1710b_0060	-	flagellar biosynthesis protein FlhG
55	 71.69	0	64006..65757	-	583	76810293	flhF	BURPS1710b_0061	-	flagellar biosynthesis regulator FlhF
56	 67.00	0	65754..67856	-	700	76811462	flhA	BURPS1710b_0062	-	flagellar biosynthesis protein FlhA
57	 68.97	0	67853..69070	-	405	162210026	flhB	BURPS1710b_0063	-	flagellar biosynthesis protein FlhB
58	 67.66	0	69766..70266	-	166	76809805	-	BURPS1710b_0064	-	DNA binding protein
59	 68.85	0	70304..71680	-	458	76810205	-	BURPS1710b_0065	-	hypothetical protein
60	 69.20	0	70453..71757	-	434	76811034	-	BURPS1710b_0066	-	putative lipoprotein
61	 71.12	0	70687..72237	+	516	76809321	-	BURPS1710b_0067	-	hypothetical protein
62	 73.02	+1	71780..72283	-	167	76812246	-	BURPS1710b_0068	-	hypothetical protein
63	 67.08	0	72481..73209	-	242	76810692	cheZ	BURPS1710b_0069	-	chemotaxis regulator CheZ
64	 64.55	0	73211..73777	-	188	76808541	cheY	BURPS1710b_0070	-	chemotaxis protein CheY
65	 68.68	0	73955..75049	-	364	76809552	cheB	BURPS1710b_0071	-	chemotaxis-specific methylesterase
66	 68.94	0	75055..75759	-	234	76810599	cheD	BURPS1710b_0072	-	chemoreceptor glutamine deamidase CheD
67	 67.62	0	75756..76700	-	314	76812213	cheR	BURPS1710b_0073	-	chemotaxis protein methyltransferase
68	 71.91	0	76707..78728	-	673	76812166	tsr	BURPS1710b_0074	-	methyl-accepting chemotaxis protein I
69	 69.41	0	78745..81768	+	1007	76811308	-	BURPS1710b_0076	-	hypothetical protein
70	 63.83	0	78769..79296	-	175	76809021	cheW-2	BURPS1710b_0075	-	chemotaxis protein CheW
71	 70.97	0	79327..81624	-	765	76809103	cheA	BURPS1710b_0077	-	chemotaxis protein CheA
72	 66.67	0	81656..82036	-	126	76811622	cheY1	BURPS1710b_0078	-	chemotaxis two-component response regulator CheY1
73	 67.45	0	82067..83089	-	340	76809964	motB	BURPS1710b_0079	-	flagellar motor protein MotB
74	 65.27	0	83106..83966	-	286	76810929	motA	BURPS1710b_0080	-	flagellar motor protein MotA
75	 63.77	0	84160..84711	-	183	76810308	flhC	BURPS1710b_0081	-	transcriptional activator FlhC
76	 60.84	-1	84805..85473	-	222	76809263	flhD	BURPS1710b_0082	-	transcriptional activator FlhD
77	 66.08	0	85581..86783	+	400	76808646	-	BURPS1710b_0083	-	glycosyl transferase, group 1 family protein
78	 65.32	0	86887..87183	-	98	76811775	bprA	BURPS1710b_0084	-	H-NS histone family protein
79	 68.65	0	87489..88193	+	234	76810515	aqpZ	BURPS1710b_0085	-	aquaporin Z
80	 64.89	0	88382..89224	-	280	76809761	cof	BURPS1710b_0086	-	Cof-like hydrolase
81	 75.76	+1	89321..90211	-	296	76808943	-	BURPS1710b_0087	-	BadF/BadG/BcrA/BcrD family ATPase
82	 65.52	0	90362..90970	+	202	76811427	tag	BURPS1710b_0088	-	DNA-3-methyladenine glycosylase I
83	 62.44	-1	91357..91569	-	70	162210083	-	BURPS1710b_0089	-	30S ribosomal protein S21
84	 65.47	0	92127..93293	+	388	162210084	fliC	BURPS1710b_0090	-	flagellin
85	 66.67	0	93337..95010	+	557	76811804	-	BURPS1710b_0091	-	hypothetical protein
86	 67.26	0	93443..94963	+	506	76808625	fliD	BURPS1710b_0092	-	flagellar hook-associated protein
87	 64.76	0	94977..95291	+	104	76810077	-	BURPS1710b_0093	-	hypothetical protein
88	 68.53	0	95379..97844	+	821	76812180	-	BURPS1710b_0094	-	TPR domain-containing protein
89	 64.58	0	97841..98989	+	382	76811209	vioA	BURPS1710b_0095	-	aminotransferase
90	 68.31	0	98986..100020	+	344	76810029	fabH	BURPS1710b_0096	-	3-oxoacyl-(acyl-carrier-protein) synthase III
91	 64.44	0	100029..100253	+	74	76811423	-	BURPS1710b_0097	-	hypothetical protein
92	 66.23	0	100043..100270	-	75	76810653	-	BURPS1710b_0098	-	cell wall surface anchor family protein, putative
93	 69.48	0	100256..101320	+	354	76808924	fabH	BURPS1710b_0099	-	3-oxoacyl- synthase
94	 72.87	+1	101260..102081	+	273	76808761	-	BURPS1710b_0100	-	short chain dehydrogenase/reductase family oxidoreductase
95	 68.40	0	102081..102713	+	210	76809861	-	BURPS1710b_0101	-	hexapeptide transferase family protein
96	 65.16	0	102715..103779	+	354	76812238	-	BURPS1710b_0102	-	Rieske (2Fe-2S) domain-containing protein
97	 55.12	-2	103859..104776	-	305	76809341	-	BURPS1710b_0103	-	hypothetical protein
98	 69.87	0	105889..106512	+	207	76810872	-	BURPS1710b_0104	-	LysE family protein
99	 69.20	0	106813..108546	-	577	76811588	acpA	BURPS1710b_0105	-	acid phosphatase
100	 76.19	+1	108829..108975	-	48	76809291	-	BURPS1710b_0106	-	hypothetical protein
67.98	MEAN

4.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.