IslandPath Analysis: Verminephrobacter eiseniae EF01-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.13   STD DEV: 4.82
Verminephrobacter eiseniae EF01-2, complete genome - 1..5566749
4908 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.91	0	493..1944	+	483	121607005	-	Veis_0001	-	chromosomal replication initiator protein DnaA
2	 62.56	0	2040..3158	+	372	121607006	-	Veis_0002	-	DNA polymerase III, beta subunit
3	 65.86	0	3321..5927	+	868	121607007	-	Veis_0003	-	DNA gyrase, B subunit
4	 63.45	0	7315..7905	-	196	121607008	-	Veis_0004	-	mobile mystery protein B
5	 62.60	0	7896..8411	-	171	121607009	-	Veis_0005	-	mobile mystery protein A
6	 62.81	0	8724..11030	+	768	121607010	-	Veis_0006	-	type III restriction enzyme, res subunit
7	 67.00	0	11421..12317	+	298	121607011	-	Veis_0007	-	LysR family transcriptional regulator
8	 71.54	+1	12341..13222	+	293	121607012	-	Veis_0008	-	hypothetical protein
9	 71.34	+1	13414..14997	+	527	121607013	-	Veis_0009	-	protein of unknown function DUF894, DitE
10	 70.71	+1	15099..16211	+	370	121607014	-	Veis_0010	-	uroporphyrinogen decarboxylase
11	 72.42	+1	16497..18635	+	712	121607015	-	Veis_0011	-	primosomal protein N'
12	 71.37	+1	18688..20538	-	616	121607016	-	Veis_0012	-	putative inner membrane transmembrane protein
13	 70.45	+1	20727..21254	+	175	121607017	-	Veis_0013	-	shikimate kinase
14	 66.34	0	21430..24165	+	911	121607018	-	Veis_0014	-	methionine synthase
15	 58.29	-1	24349..24993	-	214	121607019	-	Veis_0015	-	TetR family transcriptional regulator
16	 62.03	0	25187..26308	-	373	121607020	-	Veis_0016	-	3-dehydroquinate synthase
17	 52.62	-2	26392..27594	-	400	121607021	-	Veis_0017	-	hypothetical protein
18	 58.20	-1	27620..29758	-	712	121607022	-	Veis_0018	-	type IV pilus secretin PilQ
19	 56.17	-1	29755..30297	-	180	121607023	-	Veis_0019	-	pilus assembly protein, PilQ
20	 55.51	-1	30297..30968	-	223	121607024	-	Veis_0020	-	pilus assembly protein, PilO
21	 57.53	-1	30970..31593	-	207	121607025	-	Veis_0021	-	fimbrial assembly family protein
22	 59.81	-1	31590..32669	-	359	121607026	-	Veis_0022	-	type IV pilus assembly protein PilM
23	 63.96	0	33001..35400	+	799	121607027	-	Veis_0023	-	1A family penicillin-binding protein
24	 62.42	0	35409..35738	-	109	121607028	-	Veis_0024	-	frataxin family protein
25	 66.88	0	35913..37325	+	470	121607029	-	Veis_0025	-	FAD linked oxidase domain-containing protein
26	 69.45	0	37456..38568	-	370	121607030	-	Veis_0026	-	quinolinate synthetase
27	 71.27	+1	38614..39504	+	296	121607031	-	Veis_0027	-	hypothetical protein
28	 71.28	+1	39536..40468	+	310	121607032	-	Veis_0028	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
29	 69.40	0	40590..41432	+	280	121607033	-	Veis_0029	-	pantoate--beta-alanine ligase
30	 69.89	0	41568..42623	-	351	121607034	-	Veis_0030	-	hypothetical protein
31	 67.38	0	42665..44071	-	468	121607035	-	Veis_0031	-	multi-sensor signal transduction histidine kinase
32	 63.35	0	44140..44772	+	210	121607036	-	Veis_0032	-	two component LuxR family transcriptional regulator
33	 66.02	0	45035..45496	-	153	121607037	-	Veis_0033	-	response regulator receiver protein
34	 70.80	+1	45576..46325	-	249	121607038	-	Veis_0034	-	UBA/THIF-type NAD/FAD binding protein
35	 63.95	0	46637..48073	-	478	121607039	-	Veis_0035	-	carboxyl-terminal protease
36	 67.07	0	48218..48955	-	245	121607040	-	Veis_0036	-	phosphoglycerate mutase 1 family protein
37	 69.95	0	49114..51003	-	629	121607041	-	Veis_0037	-	dihydroxy-acid dehydratase
38	 70.37	+1	51205..52203	+	332	121607042	-	Veis_0038	-	hypothetical protein
39	 65.44	0	52347..52754	+	135	121607043	-	Veis_0039	-	rhodanese domain-containing protein
40	 65.52	0	52771..53031	+	86	121607044	-	Veis_0040	-	glutaredoxin 3
41	 61.57	0	53068..53577	+	169	121607045	-	Veis_0041	-	preprotein translocase subunit SecB
42	 73.10	+1	53643..54653	+	336	121607046	-	Veis_0042	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
43	 62.68	0	54844..55770	+	308	121607047	-	Veis_0043	-	xylose isomerase domain-containing protein
44	 62.96	0	56329..57810	-	493	121607048	-	Veis_0044	-	GntR family transcriptional regulator
45	 64.02	0	57940..58923	+	327	121607049	-	Veis_0045	-	periplasmic binding protein/LacI transcriptional regulator
46	 66.19	0	58972..60018	+	348	121607050	-	Veis_0046	-	inner-membrane translocator
47	 65.32	0	60015..60758	+	247	121607051	-	Veis_0047	-	ABC transporter related
48	 64.93	0	60776..61525	+	249	121607052	-	Veis_0048	-	LmbE family protein
49	 64.03	0	61567..62514	+	315	121607053	-	Veis_0049	-	xylose isomerase domain-containing protein
50	 63.36	0	62617..63705	+	362	121607054	-	Veis_0050	-	oxidoreductase domain-containing protein
51	 52.28	-2	63990..64427	+	145	121607055	-	Veis_0051	-	hypothetical protein
52	 63.13	0	64424..65329	+	301	121607056	-	Veis_0052	-	hypothetical protein
53	 67.77	0	65841..67013	-	390	121607057	-	Veis_0053	-	oxidoreductase domain-containing protein
54	 65.91	0	67147..68076	-	309	121607058	-	Veis_0054	-	periplasmic binding protein/LacI transcriptional regulator
55	 67.22	0	68112..69203	-	363	121607059	-	Veis_0055	-	inner-membrane translocator
56	 68.55	0	69246..70415	-	389	121607060	-	Veis_0056	-	inositol 2-dehydrogenase
57	 68.28	0	70470..71276	-	268	121607061	-	Veis_0057	-	xylose isomerase domain-containing protein
58	 66.04	0	71328..72128	-	266	121607062	-	Veis_0058	-	ABC transporter related
59	 63.39	0	72130..73287	-	385	121607063	-	Veis_0059	-	inner-membrane translocator
60	 64.74	0	73304..74239	-	311	121607064	-	Veis_0060	-	periplasmic binding protein/LacI transcriptional regulator
61	 67.25	0	74299..75849	-	516	121607065	-	Veis_0061	-	ABC transporter related
62	 70.08	+1	75875..76900	-	341	121607066	-	Veis_0062	-	hypothetical protein
63	 65.38	0	76944..77873	-	309	121607067	-	Veis_0063	-	periplasmic binding protein/LacI transcriptional regulator
64	 64.42	0	78013..78945	-	310	121607068	-	Veis_0064	-	periplasmic binding protein/LacI transcriptional regulator
65	 70.42	+1	79185..81209	+	674	121607069	-	Veis_0065	-	ribokinase-like domain-containing protein
66	 69.53	0	81212..83095	+	627	121607070	-	Veis_0066	-	thiamine pyrophosphate binding domain-containing protein
67	 68.86	0	83143..84099	+	318	121607071	-	Veis_0067	-	xylose isomerase domain-containing protein
68	 71.01	+1	84121..84948	+	275	121607072	-	Veis_0068	-	myo-inositol catabolism IolB domain-containing protein
69	 62.83	0	85093..85431	-	112	121607073	-	Veis_0069	-	XRE family transcriptional regulator
70	 65.48	0	85661..86503	+	280	121607074	-	Veis_0070	-	squalene/phytoene synthase
71	 72.19	+1	86787..88145	+	452	121607075	-	Veis_0071	-	amine oxidase
72	 61.39	0	88183..89091	-	302	121607076	-	Veis_0072	-	HflC protein
73	 64.90	0	89102..90460	-	452	121607077	-	Veis_0073	-	HflK protein
74	 66.15	0	90545..91708	-	387	121607078	-	Veis_0074	-	GTP-binding protein, HSR1-related
75	 52.94	-2	91787..92041	-	84	121607079	-	Veis_0075	-	RNA chaperone Hfq
76	 64.75	0	92152..93558	-	468	121607080	-	Veis_0076	-	small GTP-binding protein
77	 71.27	+1	93574..94767	-	397	121607081	-	Veis_0077	-	Pyrrolo-quinoline quinone
78	 66.37	0	94764..95444	-	226	121607082	-	Veis_0078	-	hypothetical protein
79	 66.52	0	95455..96780	-	441	121607083	-	Veis_0079	-	histidyl-tRNA synthetase
80	 66.82	0	96793..98118	-	441	121607084	ispG	Veis_0080	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
81	 71.36	+1	98118..98990	-	290	121607085	-	Veis_0081	-	hypothetical protein
82	 64.22	0	98983..99840	-	285	121607086	-	Veis_0082	-	type IV pilus biogenesis/stability protein PilW
83	 66.07	0	99996..101171	-	391	121607087	-	Veis_0083	-	radical SAM protein
84	 61.97	0	101185..101610	-	141	121607088	-	Veis_0084	-	nucleoside-diphosphate kinase
85	 71.72	+1	101730..103292	-	520	121607089	-	Veis_0085	-	pseudouridine synthase
86	 66.67	0	103292..103942	-	216	121607090	-	Veis_0086	-	putative transcriptional regulator
87	 70.05	+1	104197..105231	-	344	121607091	-	Veis_0087	-	RluA family pseudouridine synthase
88	 69.82	0	105237..106124	-	295	121607092	-	Veis_0088	-	peptidase M23B
89	 71.09	+1	106129..106896	-	255	121607093	-	Veis_0089	-	protein-L-isoaspartate O-methyltransferase
90	 65.77	0	106896..107675	-	259	121607094	-	Veis_0090	-	stationary-phase survival protein SurE
91	 67.90	0	107807..108781	+	324	121607095	-	Veis_0091	-	alcohol dehydrogenase
92	 71.59	+1	108832..109461	+	209	121607096	-	Veis_0092	-	phosphodiesterase/alkaline phosphatase D-like protein
93	 66.92	0	109839..111800	+	653	121607097	-	Veis_0093	-	DNA primase
94	 62.12	0	112053..112316	+	87	121607098	-	Veis_0094	-	DNA binding domain-containing protein
95	 64.69	0	112310..115042	+	910	121607099	-	Veis_0095	-	hypothetical protein
96	 66.06	0	115042..116034	+	330	121607100	-	Veis_0096	-	hypothetical protein
97	 52.80	-2	116064..117080	+	338	121607101	-	Veis_0097	-	ATPase central domain-containing protein
98	 55.82	-1	117080..119698	+	872	121607102	-	Veis_0098	-	hypothetical protein
99	 62.90	0	119698..122913	+	1071	121607103	-	Veis_0099	-	hypothetical protein
100	 63.87	0	122910..123410	+	166	121607104	-	Veis_0100	-	hypothetical protein
65.13	MEAN

4.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.