IslandPathversion 1.0

IslandPath Analysis: Streptococcus pyogenes MGAS5005



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.53 STD DEV: 3.79
Streptococcus pyogenes MGAS5005, complete genome - 1..1838554
1865 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.41	-1	202..1557	+	451	71909815	dnaA	M5005_Spy_0001	-	chromosomal replication initiation protein
2	 33.16	-1	1712..2848	+	378	71909816	dnaN	M5005_Spy_0002	-	DNA polymerase III subunit beta
3	 32.32	-1	2923..3120	+	65	71909817	-	M5005_Spy_0003	-	putative cytoplasmic protein
4	 37.19	0	3450..4565	+	371	71909818	-	M5005_Spy_0004	-	translation-associated GTPase
5	 31.75	-1	4635..5204	+	189	71909819	pth	M5005_Spy_0005	-	peptidyl-tRNA hydrolase
6	 35.39	0	5207..8710	+	1167	71909820	trcF	M5005_Spy_0006	-	transcription-repair coupling factor
7	 30.77	-2	8872..9144	+	90	71909821	-	M5005_Spy_0007	-	heat shock protein 15
8	 26.61	-2	9131..9502	+	123	71909822	divIC	M5005_Spy_0008	-	cell division protein
9	 26.98	-2	9499..9624	+	41	71909823	-	M5005_Spy_0009	-	hypothetical protein
10	 31.55	-1	9637..10923	+	428	71909824	-	M5005_Spy_0010	-	beta-lactamase
11	 28.44	-2	10920..12206	+	428	71909825	tilS	M5005_Spy_0011	-	tRNA(Ile)-lysidine synthetase
12	 30.39	-2	12211..12753	+	180	71909826	-	M5005_Spy_0012	-	hypoxanthine-guanine phosphoribosyltransferase
13	 37.68	0	12775..14754	+	659	71909827	ftsH	M5005_Spy_0013	-	cell division protein
14	 33.12	-1	15079..16470	+	463	71909828	-	M5005_Spy_0014	-	amino acid permease
15	 36.30	0	16811..16945	-	44	71909829	-	M5005_Spy_0015	-	hypothetical protein
16	 36.11	0	30106..30249	-	47	71909830	-	M5005_Spy_0016	-	putative transposase
17	 40.77	0	31134..32330	+	398	71909831	sibA	M5005_Spy_0017	-	secreted protein
18	 39.04	0	32583..33545	+	320	71909832	prsA.2	M5005_Spy_0018	-	ribose-phosphate pyrophosphokinase
19	 31.35	-1	33731..34486	+	251	71909833	recO	M5005_Spy_0019	-	DNA repair protein RecO
20	 38.10	0	34589..35596	+	335	71909834	plsX	M5005_Spy_0020	-	putative glycerol-3-phosphate acyltransferase PlsX
21	 30.04	-2	35589..35831	+	80	71909835	acpP.2	M5005_Spy_0021	-	acyl carrier protein
22	 35.92	0	35952..36686	+	244	71909836	-	M5005_Spy_0022	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
23	 44.62	+1	36762..40535	+	1257	71909837	-	M5005_Spy_0023	-	phosphoribosylformylglycinamidine synthase
24	 39.11	0	40696..42150	+	484	71909838	purF	M5005_Spy_0024	-	amidophosphoribosyltransferase
25	 42.72	+1	42178..43200	+	340	71909839	purM	M5005_Spy_0025	-	phosphoribosylaminoimidazole synthetase
26	 46.49	+2	43368..43922	+	184	71909840	purN	M5005_Spy_0026	-	phosphoribosylglycinamide formyltransferase
27	 47.16	+2	44106..45653	+	515	71909841	purH	M5005_Spy_0027	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
28	 39.56	0	45711..46835	-	374	71909842	-	M5005_Spy_0028	-	autolysin
29	 47.05	+2	46998..48353	+	451	71909843	purD	M5005_Spy_0029	-	phosphoribosylamine--glycine ligase
30	 48.53	+2	48511..49122	+	203	71909844	purE	M5005_Spy_0030	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
31	 49.95	+2	49106..50182	+	358	71909845	purK	M5005_Spy_0031	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
32	 29.87	-2	50209..51852	+	547	71909846	-	M5005_Spy_0032	-	hypothetical protein
33	 44.93	+1	51870..53162	+	430	71909847	purB	M5005_Spy_0033	-	adenylosuccinate lyase
34	 29.39	-2	53294..54205	+	303	71909848	-	M5005_Spy_0034	-	transcriptional regulator
35	 39.64	0	54431..55429	+	332	71909849	ruvB	M5005_Spy_0035	-	Holliday junction DNA helicase B
36	 35.62	0	55567..56004	+	145	71909850	-	M5005_Spy_0036	-	protein tyrosine phosphatase
37	 36.07	0	56027..56428	+	133	71909851	-	M5005_Spy_0037	-	hypothetical protein
38	 36.54	0	56425..58200	+	591	71909852	-	M5005_Spy_0038	-	acyltransferase
39	 40.26	0	58509..61151	+	880	71909853	adh2	M5005_Spy_0039	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
40	 42.28	0	61403..62419	+	338	161936128	adhA	M5005_Spy_0040	-	alcohol dehydrogenase
41	 40.64	0	62807..63778	+	323	71909855	-	M5005_Spy_0041	-	Na+ driven multidrug efflux pump
42	 42.45	+1	63783..64100	+	105	71909856	-	M5005_Spy_0042	-	Na+ driven multidrug efflux pump
43	 40.13	0	64301..64609	+	102	71909857	rpsJ	M5005_Spy_0043	-	30S ribosomal protein S10
44	 41.95	0	64825..65451	+	208	71909858	rplC	M5005_Spy_0044	-	50S ribosomal protein L3
45	 42.47	+1	65475..66098	+	207	71909859	rplD	M5005_Spy_0045	-	50S ribosomal protein L4
46	 37.71	0	66098..66394	+	98	71909860	rplW	M5005_Spy_0046	-	50S ribosomal protein L23
47	 43.53	+1	66412..67245	+	277	71909861	rplB	M5005_Spy_0047	-	50S ribosomal protein L2
48	 40.50	0	67384..67662	+	92	71909862	rpsS	M5005_Spy_0048	-	30S ribosomal protein S19
49	 39.71	0	67678..68022	+	114	71909863	rplV	M5005_Spy_0049	-	50S ribosomal protein L22
50	 41.59	0	68035..68688	+	217	71909864	rpsC	M5005_Spy_0050	-	30S ribosomal protein S3
51	 43.24	+1	68692..69105	+	137	71909865	rplP	M5005_Spy_0051	-	50S ribosomal protein L16
52	 34.78	0	69115..69321	+	68	71909866	rpmC	M5005_Spy_0052	-	50S ribosomal protein L29
53	 38.31	0	69347..69607	+	86	71909867	rpsQ	M5005_Spy_0053	-	30S ribosomal protein S17
54	 44.17	+1	69632..70000	+	122	71909868	rplN	M5005_Spy_0054	-	50S ribosomal protein L14
55	 36.27	0	70079..70384	+	101	71909869	rplX	M5005_Spy_0055	-	50S ribosomal protein L24
56	 40.52	0	70408..70950	+	180	71909870	rplE	M5005_Spy_0056	-	50S ribosomal protein L5
57	 39.25	0	70966..71151	+	61	71909871	rpsN	M5005_Spy_0057	-	30S ribosomal protein S14
58	 36.59	0	71302..71700	+	132	71909872	rpsH	M5005_Spy_0058	-	30S ribosomal protein S8
59	 39.11	0	71903..72439	+	178	71909873	rplF	M5005_Spy_0059	-	50S ribosomal protein L6
60	 45.94	+1	72544..72900	+	118	71909874	rplR	M5005_Spy_0060	-	50S ribosomal protein L18
61	 42.42	+1	72919..73413	+	164	71909875	rpsE	M5005_Spy_0061	-	30S ribosomal protein S5
62	 37.16	0	73428..73610	+	60	71909876	rpmD	M5005_Spy_0062	-	50S ribosomal protein L30
63	 39.68	0	73824..74264	+	146	71909877	rplO	M5005_Spy_0063	-	50S ribosomal protein L15
64	 36.40	0	74281..75585	+	434	71909878	secY	M5005_Spy_0064	-	preprotein translocase subunit SecY
65	 39.44	0	75735..76373	+	212	71909879	adk	M5005_Spy_0065	-	adenylate kinase
66	 36.99	0	76491..76709	+	72	71909880	infA	M5005_Spy_0066	-	translation initiation factor IF-1
67	 37.61	0	76735..76851	+	38	71909881	rpmJ	M5005_Spy_0067	-	50S ribosomal protein L36
68	 39.34	0	76869..77234	+	121	71909882	rpsM	M5005_Spy_0068	-	30S ribosomal protein S13
69	 44.27	+1	77252..77635	+	127	71909883	rpsK	M5005_Spy_0069	-	30S ribosomal protein S11
70	 38.02	0	77681..78619	+	312	71909884	rpoA	M5005_Spy_0070	-	DNA-directed RNA polymerase subunit alpha
71	 40.57	0	78634..79020	+	128	71909885	rplQ	M5005_Spy_0071	-	50S ribosomal protein L17
72	 36.30	0	79618..79752	-	44	71909886	-	M5005_Spy_0072	-	hypothetical protein
73	 42.47	+1	86264..86449	+	61	71909887	-	M5005_Spy_0073	-	hypothetical protein
74	 42.03	0	87087..87224	+	45	71909888	-	M5005_Spy_0074	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
75	 43.40	+1	87235..87393	+	52	71909889	-	M5005_Spy_0075	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
76	 36.42	0	87499..87660	+	53	71909890	-	M5005_Spy_0076	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
77	 34.01	-1	87770..88213	+	147	71909891	adcR	M5005_Spy_0077	-	MarR family transcriptional regulator
78	 40.97	0	88217..88936	+	239	71909892	adcC	M5005_Spy_0078	-	high-affinity zinc uptake system ATP-binding protein
79	 38.48	0	88929..89744	+	271	71909893	adcB	M5005_Spy_0079	-	high-affinity zinc uptake system membrane protein
80	 40.89	0	89784..90167	-	127	71909894	-	M5005_Spy_0080	-	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)
81	 41.45	0	90218..91474	-	418	71909895	tyrS	M5005_Spy_0081	-	tyrosyl-tRNA synthetase
82	 40.25	0	91566..93878	+	770	71909896	pbp1b	M5005_Spy_0082	-	multimodular transpeptidase-transglycosylase PBP 1B
83	 43.09	+1	94142..97708	+	1188	71909897	rpoB	M5005_Spy_0083	-	DNA-directed RNA polymerase subunit beta
84	 43.74	+1	97799..101440	+	1213	71909898	rpoC	M5005_Spy_0084	-	DNA-directed RNA polymerase subunit beta'
85	 34.70	-1	101592..101957	+	121	71909899	-	M5005_Spy_0085	-	putative DNA binding protein
86	 37.38	0	102050..102988	+	312	71909900	comYA	M5005_Spy_0086	-	comG operon protein 1
87	 35.16	0	102867..103958	+	363	71909901	comYB	M5005_Spy_0087	-	comG operon protein 2
88	 33.94	-1	103960..104286	+	108	71909902	comYC	M5005_Spy_0088	-	comG operon protein 3
89	 34.55	-1	104360..104689	+	109	71909903	-	M5005_Spy_0089	-	comG operon protein 4
90	 37.89	0	104646..104930	+	94	71909904	-	M5005_Spy_0090	-	hypothetical protein
91	 35.17	0	104923..105357	+	144	71909905	comYD	M5005_Spy_0091	-	comG operon protein 6
92	 35.47	0	105341..105667	+	108	71909906	-	M5005_Spy_0092	-	comG operon protein 6
93	 38.36	0	105765..106718	+	317	71909907	-	M5005_Spy_0093	-	adenine-specific methyltransferase
94	 38.93	0	106777..107973	+	398	71909908	ackA	M5005_Spy_0094	-	acetate kinase
95	 35.60	0	108160..108468	+	102	71909909	-	M5005_Spy_0095	-	hypothetical protein
96	 43.84	+1	108551..109321	-	256	71909910	proC	M5005_Spy_0096	-	pyrroline-5-carboxylate reductase
97	 45.13	+1	109369..110436	-	355	71909911	pepA	M5005_Spy_0097	-	glutamyl aminopeptidase
98	 38.18	0	110546..110710	-	54	71909912	-	M5005_Spy_0098	-	hypothetical protein
99	 37.07	0	110892..111185	+	97	71909913	-	M5005_Spy_0099	-	hypothetical protein
100	 34.59	-1	111182..111499	+	105	71909914	-	M5005_Spy_0100	-	thioredoxin
38.53	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.