IslandPath Analysis: Staphylococcus epidermidis ATCC 12228



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.28   STD DEV: 3.83
Staphylococcus epidermidis ATCC 12228, complete genome - 1..2499279
2419 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.70	0	362..1717	+	451	27466919	dnaA	SE0001	-	chromosomal replication initiation protein
2	 31.83	0	2026..3159	+	377	27466920	-	SE0002	-	DNA polymerase III subunit beta
3	 34.50	0	3822..4937	+	371	27466921	recF	SE0003	-	recombination protein F
4	 36.85	+1	4948..6879	+	643	27466922	-	SE0004	-	DNA gyrase subunit B
5	 36.73	+1	6916..9597	+	893	27466923	-	SE0005	-	DNA gyrase subunit A
6	 38.01	+1	9988..10821	-	277	27466924	-	SE0006	-	hypothetical protein
7	 34.73	0	11648..12934	+	428	27466925	-	SE0007	-	seryl-tRNA synthetase
8	 33.73	0	13462..14466	-	334	27466926	-	SE0008	-	truncated beta-hemplysin
9	 36.36	+1	14829..15521	+	230	27466927	-	SE0009	-	amino acid permease
10	 33.03	0	15518..15847	+	109	27466928	-	SE0010	-	hypothetical protein
11	 36.02	0	16136..17104	+	322	27466929	-	SE0011	-	putative homoserine-o-acetyltransferase
12	 32.04	0	17353..18279	+	308	27466930	-	SE0012	-	hypothetical protein
13	 36.79	+1	18308..20275	+	655	27466931	-	SE0013	-	hypothetical protein
14	 34.23	0	20272..20718	+	148	27466932	rplI	SE0014	-	50S ribosomal protein L9
15	 39.47	+1	20889..22289	+	466	27466933	-	SE0015	-	replicative DNA helicase
16	 39.41	+1	22567..23850	+	427	27466934	-	SE0016	-	adenylosuccinate synthetase
17	 23.66	-2	24765..24857	+	30	27466935	-	SE0017	-	hypothetical protein
18	 36.18	+1	24901..25602	+	233	27466936	-	SE0018	-	response regulator
19	 37.75	+1	25615..27447	+	610	27466937	-	SE0019	-	two-component sensor histidine kinase
20	 37.27	+1	27431..28777	+	448	27466938	-	SE0020	-	hypothetical protein
21	 33.71	0	28778..29569	+	263	27466939	-	SE0021	-	hypothetical protein
22	 38.70	+1	30189..30989	+	266	27466940	-	SE0022	-	hypothetical protein
23	 37.08	+1	32031..32510	+	159	27466941	-	SE0023	-	hypothetical protein
24	 19.67	-2	32604..32786	-	60	27466942	-	SE0024	-	hypothetical protein
25	 25.30	-1	33035..35362	+	775	27466943	-	SE0025	-	teichoic acid biosynthesis protein F
26	 27.11	-1	35651..36148	-	165	27466944	-	SE0026	-	spermidine acetyltransferase
27	 22.48	-2	36423..36551	-	42	27466945	-	SE0027	-	hypothetical protein
28	 29.93	0	36816..37226	-	136	27466946	-	SE0028	-	hypothetical protein
29	 26.58	-1	37389..37610	-	73	27466947	-	SE0029	-	hypothetical protein
30	 36.45	+1	37624..38136	-	170	27466948	-	SE0030	-	hypothetical protein
31	 33.01	0	38142..38453	-	103	27466949	-	SE0031	-	hypothetical protein
32	 33.33	0	38455..38547	-	30	27466950	-	SE0032	-	hypothetical protein
33	 35.90	0	38540..38890	-	116	27466951	-	SE0033	-	hypothetical protein
34	 32.75	0	39497..40180	-	227	27466952	-	SE0034	-	hypothetical protein
35	 31.37	0	40427..41650	+	407	27466953	-	SE0035	-	penicillin binding protein 4
36	 34.50	0	42441..44069	-	542	27466954	-	SE0036	-	cassette chromosome recombinase B
37	 34.59	0	44091..45440	-	449	27466955	-	SE0037	-	cassette chromosome recombinase A
38	 34.50	0	45674..47467	-	597	27466956	-	SE0038	-	hypothetical protein
39	 34.68	0	47467..47763	-	98	27466957	-	SE0039	-	hypothetical protein
40	 25.02	-1	47956..49002	-	348	27466958	-	SE0040	-	hypothetical protein
41	 28.57	0	49457..50611	+	384	27466959	-	SE0041	-	Abi-alpha protein
42	 27.47	-1	50641..51441	+	266	27466960	-	SE0042	-	abortive phage resistance protein
43	 25.00	-1	51626..51769	+	47	27466961	-	SE0043	-	type I restriction enzyme R protein
44	 28.26	-1	51762..52964	+	400	27466962	-	SE0044	-	specificity determinant HsdS
45	 25.00	-1	52968..53219	-	83	27466963	-	SE0045	-	putative transposase
46	 27.11	-1	53287..53784	-	165	27466964	-	SE0046	-	spermidine acetyltransferase
47	 22.48	-2	54063..54191	-	42	27466965	-	SE0047	-	hypothetical protein
48	 29.68	0	54456..54866	-	136	27466966	-	SE0048	-	hypothetical protein
49	 31.48	0	55172..55279	-	35	27466967	-	SE0049	-	hypothetical protein
50	 38.24	+1	55264..55467	-	67	27466968	-	SE0050	-	hypothetical protein
51	 33.04	0	55611..56624	-	337	27466969	-	SE0051	-	hypothetical protein
52	 32.12	0	56998..57327	-	109	27466970	-	SE0052	-	hypothetical protein
53	 33.65	0	57343..57654	-	103	27466971	-	SE0053	-	hypothetical protein
54	 31.18	0	57656..57748	-	30	27466972	-	SE0054	-	hypothetical protein
55	 36.75	+1	57741..58091	-	116	27466973	-	SE0055	-	hypothetical protein
56	 33.46	0	58592..60220	-	542	27466974	-	SE0056	-	cassette chromosome recombinase B
57	 33.19	0	60217..61578	-	453	27466975	-	SE0057	-	cassette chromosome recombinase A
58	 32.82	0	61765..62346	-	193	27466976	-	SE0058	-	hypothetical protein
59	 30.83	0	62622..62741	+	39	27466977	-	SE0059	-	cassette chromosome recombinase A
60	 35.56	0	62853..63212	-	119	27466978	-	SE0060	-	hypothetical protein
61	 39.39	+1	63848..63946	+	32	27466979	-	SE0061	-	hypothetical protein
62	 34.94	0	64066..66000	+	644	27466980	-	SE0062	-	copper-transporting ATPase copA
63	 25.20	-1	67123..67245	-	40	27466981	-	SE0063	-	putative transposase
64	 27.68	-1	67312..67488	-	58	27466982	-	SE0064	-	putative transposase
65	 27.64	-1	67457..67579	-	40	27466983	-	SE0065	-	putative transposase
66	 22.22	-2	67566..67673	-	35	27466984	-	SE0066	-	putative transposase
67	 32.16	0	67822..67992	-	56	27466985	-	SE0067	-	putative transposase
68	 24.56	-2	68194..68763	+	189	27466986	-	SE0068	-	hypothetical protein
69	 22.97	-2	68808..69965	+	385	27466987	-	SE0069	-	hypothetical protein
70	 32.91	0	70136..70372	+	78	27466988	-	SE0070	-	hypothetical protein
71	 34.37	0	70397..71071	+	224	27466989	-	SE0071	-	transposase for IS-like element
72	 35.19	0	71099..71476	-	125	27466990	-	SE0072	-	lipoprotein signal peptidase
73	 38.62	+1	71924..72112	+	62	27466991	-	SE0073	-	cadmium efflux system accesory protein
74	 37.11	+1	72366..73133	+	255	27466992	-	SE0074	-	putative divalent heavy-metal cations transporter
75	 37.61	+1	73390..75798	+	802	27466993	-	SE0075	-	cadmium resistance protein B
76	 29.18	0	75779..77440	-	553	27466994	-	SE0076	-	putative transposase
77	 39.93	+1	77768..79282	+	504	27466995	-	SE0077	-	dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3
78	 34.39	0	79510..80172	+	220	27466996	-	SE0078	-	cadmium resistance transporter, putative
79	 34.52	0	80680..81354	-	224	27466997	-	SE0079	-	transposase for IS-like element
80	 41.04	+2	81622..82983	+	453	27466998	-	SE0080	-	regulatory protein
81	 40.44	+2	83283..83690	+	135	27466999	-	SE0081	-	hypothetical protein
82	 38.42	+1	83707..84060	+	117	27467000	-	SE0082	-	hypothetical protein
83	 42.29	+2	84057..84737	+	226	27467001	-	SE0083	-	hypothetical protein
84	 44.83	+2	84863..85210	+	115	27467002	-	SE0084	-	mercuric transport protein
85	 46.23	+2	85268..86911	+	547	27467003	-	SE0085	-	dihydrolipoamide dehydrogenase
86	 53.15	+2	86993..87643	+	216	27467004	-	SE0086	-	alkylmercury lyase
87	 39.53	+1	87838..88386	-	182	27467005	-	SE0087	-	hypothetical protein
88	 42.59	+2	88583..88798	+	71	27467006	-	SE0088	-	hypothetical protein
89	 37.94	+1	88823..89104	+	93	27467007	-	SE0089	-	hypothetical protein
90	 34.52	0	89170..89844	-	224	27467008	-	SE0090	-	transposase for IS-like element
91	 29.73	0	90096..90206	+	36	27467009	-	SE0091	-	type I restriction enzyme R protein
92	 28.74	0	90561..91256	+	231	27467010	-	SE0092	-	hypothetical protein
93	 25.09	-1	91329..91874	-	181	27467011	-	SE0093	-	TetR family transcriptional regulator
94	 28.67	0	92040..92768	+	242	27467012	-	SE0094	-	ABC transporter ecsA-like protein
95	 30.23	0	92765..93859	+	364	27467013	-	SE0095	-	hypothetical protein
96	 31.33	0	93874..94821	+	315	27467014	-	SE0096	-	alginate lyase
97	 28.22	-1	94836..95441	+	201	27467015	-	SE0097	-	hypothetical protein
98	 24.92	-1	95718..96347	+	209	27467016	-	SE0098	-	hypothetical protein
99	 25.51	-1	96362..96604	+	80	27467017	-	SE0099	-	hypothetical protein
100	 28.03	-1	97062..97193	+	43	27467018	-	SE0100	-	transposase
32.28	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.